ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0568 good J KOG1004 Translation, ribosomal structure and biogenesis Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0568 196450 197169 240
(240 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL142w [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subun... 258 4e-69
SPAC22A12.12c [J] KOG1004 Exosomal 3'-5' exoribonuclease complex... 129 3e-30
Hs7705606 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex sub... 112 4e-25
Hs14736834 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex su... 112 4e-25
CE11462 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subun... 108 5e-24
At2g25350_2 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex s... 64 2e-10
ECU09g1240 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex su... 61 1e-09
>YOL142w [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Length = 240
Score = 258 bits (660), Expect = 4e-69
Identities = 133/242 (54%), Positives = 172/242 (70%), Gaps = 5/242 (2%)
Query: 1 MSKLLLPGDVISADETQSQSISAGPGIYSDPLSQEIKATHAG-LEVVTPNKKGA-SVYVD 58
MS + PGD D T + GPGIY DP +QEI+ + G L V K G + Y+D
Sbjct: 1 MSTFIFPGDSFPVDPTTP--VKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYID 58
Query: 59 YNSKRYIPAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKPTLKVGDL 118
Y+SKRYIP+V DFV+GVI+ +F DSY+VSL NFS+ V+LSYMAFPNASKKN+PTL+VGDL
Sbjct: 59 YSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDL 118
Query: 119 CYARVCSAYKELEAEIECMDSSKGQDAGFGLLDGGMTIEVSLAYARELLFNDSYPLLNIL 178
YARVC+A KELEAEIEC DS+ G+DAGFG+L+ GM I+V+ +AR+LLFN+ +PLL +L
Sbjct: 119 VYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNFNFARQLLFNNDFPLLKVL 178
Query: 179 GNLVEFEVAIGVNGIIWLKTDDVRTTLACYRSIL-TCQGVSPAQFDKTIKSIFNDTLKST 237
+FEVAIG+NG IW+K +++ TLACYR+I+ CQ A F K F + L
Sbjct: 179 AAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILTVK 238
Query: 238 DE 239
+E
Sbjct: 239 EE 240
>SPAC22A12.12c [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Length = 240
Score = 129 bits (325), Expect = 3e-30
Identities = 78/227 (34%), Positives = 133/227 (58%), Gaps = 12/227 (5%)
Query: 6 LPGDVISADETQSQSISAGPGIY--SDPLSQEIKATHAGLEVVTPNKKGASVYVDYNSKR 63
+P +IS D SI GPG+ +EI + AG T ++ +D +KR
Sbjct: 19 IPDSIISQDG----SIRLGPGLVFQKKDREEEIVVSKAGRLHQTGKN---AMLIDSRTKR 71
Query: 64 YIPAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKPTLKVGDLCYARV 123
YIPA D V+G I++ F + YRV + + ++ L+ +AF N ++K++P L VG L YARV
Sbjct: 72 YIPATNDQVIGQIISRFAEGYRVDIGS-AHIAQLNALAFENVTRKSRPNLNVGSLVYARV 130
Query: 124 CSAYKELEAEIECMDSSKGQDAGFG-LLDGGMTIEVSLAYARELLFNDSYPLLNILGNLV 182
A +++E E+EC D++ G+ AG+G L +G M +SL++ R+L+ + LL LG+ +
Sbjct: 131 SLADRDMEPELECFDATTGKAAGYGELKNGYMITGLSLSHCRKLILPKN-TLLQTLGSYI 189
Query: 183 EFEVAIGVNGIIWLKTDDVRTTLACYRSILTCQGVSPAQFDKTIKSI 229
FE+A+G+NG +W+ ++++ TT+ +I C+ +S + K K +
Sbjct: 190 PFEIAVGMNGRVWVNSENLSTTVLICTAIRNCEFMSDEEQIKYCKDL 236
>Hs7705606 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Length = 220
Score = 112 bits (281), Expect = 4e-25
Identities = 60/171 (35%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 52 GASVYVDYNSKRYIPAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKP 111
G +VD KRY+P GD V+G++ A GD ++V + S P +LSY++F A+K+N+P
Sbjct: 42 GGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFEGATKRNRP 100
Query: 112 TLKVGDLCYARVCSAYKELEAEIECMDSSKGQDAGFGLL-DGGMTIEVSLAYARELLFND 170
++VGDL Y + A K++E E+ C+DS G+ G G++ G+ +V+L R+LL D
Sbjct: 101 NVQVGDLIYGQFVVANKDMEPEMVCIDSC-GRANGMGVIGQDGLLFKVTLGLIRKLLAPD 159
Query: 171 SYPLLNILGNLVEFEVAIGVNGIIWLKTDDVRTTLACYRSILTCQGVSPAQ 221
++ +G L E+ G+NG IW+K ++ TL + C+ ++ Q
Sbjct: 160 C-EIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 209
>Hs14736834 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Length = 275
Score = 112 bits (281), Expect = 4e-25
Identities = 60/171 (35%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 52 GASVYVDYNSKRYIPAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKP 111
G +VD KRY+P GD V+G++ A GD ++V + S P +LSY++F A+K+N+P
Sbjct: 97 GGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFEGATKRNRP 155
Query: 112 TLKVGDLCYARVCSAYKELEAEIECMDSSKGQDAGFGLL-DGGMTIEVSLAYARELLFND 170
++VGDL Y + A K++E E+ C+DS G+ G G++ G+ +V+L R+LL D
Sbjct: 156 NVQVGDLIYGQFVVANKDMEPEMVCIDSC-GRANGMGVIGQDGLLFKVTLGLIRKLLAPD 214
Query: 171 SYPLLNILGNLVEFEVAIGVNGIIWLKTDDVRTTLACYRSILTCQGVSPAQ 221
++ +G L E+ G+NG IW+K ++ TL + C+ ++ Q
Sbjct: 215 C-EIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQ 264
>CE11462 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Length = 226
Score = 108 bits (271), Expect = 5e-24
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 13/199 (6%)
Query: 6 LPGDVISADETQSQSISAGPGIYSDPLSQEIKATHAGLEVVTPNKKGASVYVDYNSKRYI 65
LPGDVI+ + SI G GI Q AT G + V+++ +SKRYI
Sbjct: 5 LPGDVINEPSSSDSSI-IGYGI--SVRGQTRIATQPGAF----HNDDGKVWLNVHSKRYI 57
Query: 66 PAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKPTLKVGDLCYARVCS 125
P GD V+ ++ + GD +R+ + + +++ F A+K+N+P LK GD+ YA V
Sbjct: 58 PQEGDRVIAIVTSKTGDFFRLDI-GTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFD 116
Query: 126 AYKELEAEIECMDSSKGQDAGFGLLDGGMTIEVSLAYARELLFNDSYPLLNILGNLVEFE 185
EAE+ C+D K + G G L+GG +VSL + R L+ N S +L +G +FE
Sbjct: 117 TTPRTEAELTCVDDEK-RARGMGQLNGGFMFKVSLNHCRRLI-NPSCKILQTVGKFFKFE 174
Query: 186 VAIGVNGIIWLK---TDDV 201
+ +G+NG IW+ +DD+
Sbjct: 175 ITVGMNGRIWISASTSDDI 193
>At2g25350_2 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Length = 157
Score = 63.5 bits (153), Expect = 2e-10
Identities = 44/158 (27%), Positives = 72/158 (44%), Gaps = 18/158 (11%)
Query: 64 YIPAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKPTLKVGDLCYARV 123
Y+P D V+G++V G++Y + + L +AF A+++N P +
Sbjct: 4 YVPRPEDHVLGIVVDCKGENYWIDIKG-PQLALLPVLAFEGANRRNYPKFEA-------- 54
Query: 124 CSAYKELEAEIECMDSSKGQDAGFGLLDGGMTIEVSLAYARELLFNDSYPLLNILGNLVE 183
K L+ IE G+ AGFG L G E S +R LL + + P+L LG +
Sbjct: 55 ----KLLDNVIE-----SGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLS 105
Query: 184 FEVAIGVNGIIWLKTDDVRTTLACYRSILTCQGVSPAQ 221
FE A G+NG W+ R + +++ + +S Q
Sbjct: 106 FETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQ 143
>ECU09g1240 [J] KOG1004 Exosomal 3'-5' exoribonuclease complex subunit Rrp40
Length = 189
Score = 61.2 bits (147), Expect = 1e-09
Identities = 45/151 (29%), Positives = 75/151 (48%), Gaps = 17/151 (11%)
Query: 55 VYVDYNSKRYIPAVGDFVVGVIVASFGDSYRVSLCNFSNPVTLSYMAFPNASKKNKPTLK 114
++V + RY P + D V+G +V + D ++V L L ++F NA+K+NKP +
Sbjct: 42 LFVVSKTNRYQPCIDDIVIGKVVLTSQDMHKVDLGGTVG--ALPSLSFTNATKRNKPEVS 99
Query: 115 VGDLCYARVCSAYKELEAEIECMDSSKGQDAGFGLLDGGMTIEVSLAYARELLFNDSYPL 174
GD ++ E + C+ GFG L G + + +S R L +D+
Sbjct: 100 KGDHLLCKIVRM--GTEPLLTCVGE------GFGKLKGAV-LPLSPWKVRLLYLSDT--- 147
Query: 175 LNILGNLVEFEVAIGVNGIIWL---KTDDVR 202
L+I+G F +A+G+NG +W+ K DVR
Sbjct: 148 LSIVGKKYRFRIALGLNGFVWIDAEKDTDVR 178
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,177,839
Number of Sequences: 60738
Number of extensions: 582256
Number of successful extensions: 1264
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 7
length of query: 240
length of database: 30,389,216
effective HSP length: 103
effective length of query: 137
effective length of database: 24,133,202
effective search space: 3306248674
effective search space used: 3306248674
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)