ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0594    suspect: LH   R     KOG2602  General function prediction only                               Predicted cell surface protein homologous to bacterial outer membrane proteins

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0594  209709 208270 -480 
         (480 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 [R] KOG2602 Predicted cell surface protein homologou...    85   2e-16
YNL026w [R] KOG2602 Predicted cell surface protein homologous to...    68   3e-11

>SPAC17C9.06 [R] KOG2602 Predicted cell surface protein homologous to bacterial
           outer membrane proteins
          Length = 475

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 108/449 (24%), Positives = 178/449 (39%), Gaps = 60/449 (13%)

Query: 55  VDSAFKSCEDIQKKLLFTGLFQSAEITLDHDVDVRSSRLLTENVPKTLDIELP------- 107
           +    K+C D  K      L ++        +   +  L+  NV +T +I++        
Sbjct: 62  IRKVLKTCLDTSKPAKSRSLLETLNA-----IQETTGNLMAFNVYETANIKIDRASSSVS 116

Query: 108 ----IPTIAQVKLVPAVYNKGSLSTTTRDTYSSAGARLFWINKFGNAETISLQGDVNYTP 163
               +    QVK  P +Y +    T   +   +  A +   N FG AE +S  G+V+Y  
Sbjct: 117 GDDDLDVTIQVKEKPRLYVE--TGTDVGNVEGNVHANVLARNVFGGAELLS--GNVSY-- 170

Query: 164 FNGKLDERLLGAKLALPFPKNPSVKAAVYANHTYLDLFKQPFIGESDEHKQSQFGLSAGI 223
             G  +   +      P   +P  +   +  H+ L   K         H     G++  +
Sbjct: 171 --GTRNRSTMSVNFETPVNADPKTRLR-FNGHSNLRDNKS-----ISSHDLLTKGITLSL 222

Query: 224 EKNFLYNNNKSVIETFNGMTMVARNIYGFADALAVSDSIKQFQGTFTKSSFISELKSDSR 283
           +   L++      E      ++ R +    +    S S++   G   K S       D+R
Sbjct: 223 QHQDLWSG-----EHLLSQNLLWRQVTHLTEY--ASPSVRLEAGDSLKQSLSYTYTRDTR 275

Query: 284 EFYNRFPVSGKRVQLFHEYILSQGFTNSKPLPHESNFDKLSVSYETHRPFFNTKLVTSLH 343
           + +   P  G  V+   E +   GF     LP +++F K S  +       N+    SL 
Sbjct: 276 D-HLMIPTKGDYVRQTLE-LAGFGF-----LPGDASFLK-SEFWGQKAVALNSSRSVSLS 327

Query: 344 LDAGAIFPWKNKSKPLVHLLDSFYLGGPKSLKGFERNCVGNR------GGLYFYKLGISS 397
           L A  I    + +K  V L D F LGG  SL+GF  + +G +      GG  +    +S 
Sbjct: 328 LSA-RIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRIGPKDGRDSLGGTAYMAFSMSL 386

Query: 398 SFKLPNTPIDSPLRLQSFINFGDVLNNWRDAN-------LERKPALSTGISLIYSASFAN 450
            F LP      P RLQ F N G  L+N    N       +  KP +STG+ L+Y+   A 
Sbjct: 387 LFPLPKVDASKPFRLQLFANAGG-LSNLTSPNPCGTYKSILSKPCISTGLGLVYATPAAR 445

Query: 451 LDLSYSLPLRVRDYDIAKPGLTFGLDLSF 479
            +L+++LP+   + DI + GL FG  + F
Sbjct: 446 FELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>YNL026w [R] KOG2602 Predicted cell surface protein homologous to bacterial
           outer membrane proteins
          Length = 484

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 14/172 (8%)

Query: 322 KLSVSYETHRPFFNTKLVT-SLHLDAGAIFPWKNKSKPLVHLLDSFYLGGPKSLKGFERN 380
           K  +   + + + N   +T S  +  G +    ++    VH+ D F  GGP  ++GF+  
Sbjct: 312 KTQLELNSVKSWMNDDFITFSTTIKTGYLKNLSSQQSLPVHICDKFQSGGPSDIRGFQTF 371

Query: 381 CVGNR------GGLYFYKLGISSSFKLPNTPID-SPLRLQSFINFGDVLNNWRDA----- 428
            +G R      GG  F   G+S   +LP   ++ S  RL  F N G ++N+   +     
Sbjct: 372 GLGPRDLYDAVGGDAFVSYGLSVFSRLPWKKVEKSNFRLHWFFNGGKLVNHDNTSLGNCI 431

Query: 429 -NLERKPALSTGISLIYSASFANLDLSYSLPLRVRDYDIAKPGLTFGLDLSF 479
             L ++ + STGI L+     A  +L+++LP+   + D+ + G  FGL L+F
Sbjct: 432 GQLSKEHSTSTGIGLVLRHPMARFELNFTLPITAHENDLIRKGFQFGLGLAF 483


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,114,443
Number of Sequences: 60738
Number of extensions: 1299896
Number of successful extensions: 2699
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2696
Number of HSP's gapped (non-prelim): 2
length of query: 480
length of database: 30,389,216
effective HSP length: 110
effective length of query: 370
effective length of database: 23,708,036
effective search space: 8771973320
effective search space used: 8771973320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)