ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0659 good A KOG1783 RNA processing and modification Small nuclear ribonucleoprotein F
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0659 233402 233163 -80
(80 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR378c [A] KOG1783 Small nuclear ribonucleoprotein F 99 1e-21
CE22886 [A] KOG1783 Small nuclear ribonucleoprotein F 66 7e-12
Hs5901998 [A] KOG1783 Small nuclear ribonucleoprotein F 64 3e-11
At3g59810 [A] KOG1783 Small nuclear ribonucleoprotein F 63 8e-11
At2g43810 [A] KOG1783 Small nuclear ribonucleoprotein F 63 8e-11
7291213 [A] KOG1783 Small nuclear ribonucleoprotein F 60 5e-10
SPAC2F3.17c [A] KOG1783 Small nuclear ribonucleoprotein F 55 2e-08
Hs4507131 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 53 9e-08
Hs14755615 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 53 9e-08
7303504 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 51 3e-07
At4g30220 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 50 7e-07
SPBC3E7.14 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 49 9e-07
>YDR378c [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 123
Score = 98.6 bits (244), Expect = 1e-21
Identities = 50/84 (59%), Positives = 63/84 (74%), Gaps = 4/84 (4%)
Query: 1 MESKATASGS----FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEE 56
M KA+ GS FL +IIGK V VKL SG+LY G+LESIDGFMNV +S +EHYE+
Sbjct: 38 MSGKASTEGSVTTEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNN 97
Query: 57 NGTLHKYPSEVFLRGSQVLYISEK 80
N L+K+ S+VFLRG+QV+YISE+
Sbjct: 98 NKLLNKFNSDVFLRGTQVMYISEQ 121
>CE22886 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 77
Score = 66.2 bits (160), Expect = 7e-12
Identities = 34/76 (44%), Positives = 46/76 (59%), Gaps = 4/76 (5%)
Query: 3 SKATASGSFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHK 62
SK FL+ +IGKPV VKL SG+ Y+G L +DG+MN+ + Q E+ NG L
Sbjct: 2 SKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEY----SNGQLQN 57
Query: 63 YPSEVFLRGSQVLYIS 78
+ F+RG+ VLYIS
Sbjct: 58 KYGDAFIRGNNVLYIS 73
>Hs5901998 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 80
Score = 64.3 bits (155), Expect = 3e-11
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 1 MESKATASGSFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTL 60
M + FL+ IIG+PV VKL SG+ Y+G L +DG+MN+ + Q E+ NG L
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYV----NGQL 56
Query: 61 HKYPSEVFLRGSQVLYIS 78
+ F+RG+ VLYIS
Sbjct: 57 KNKYGDAFIRGNNVLYIS 74
>At3g59810 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 91
Score = 62.8 bits (151), Expect = 8e-11
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
FL++I G+PV VKL SG+ Y+G L +DG+MN+ M Q E+ NG L + F+R
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYV----NGQLKNKYGDAFIR 73
Query: 71 GSQVLYIS 78
G+ VLYIS
Sbjct: 74 GNNVLYIS 81
>At2g43810 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 91
Score = 62.8 bits (151), Expect = 8e-11
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
FL++I GKPV VKL SG+ Y+G L +DG+MN+ M Q E+ NG L + F+R
Sbjct: 18 FLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYV----NGQLKNTYGDAFVR 73
Query: 71 GSQVLYIS 78
G+ VLYIS
Sbjct: 74 GNNVLYIS 81
>7291213 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 79
Score = 60.1 bits (144), Expect = 5e-10
Identities = 31/76 (40%), Positives = 45/76 (58%), Gaps = 4/76 (5%)
Query: 3 SKATASGSFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHK 62
S+ A F+ I G+PV VKL +G+ Y+G L +DG+MN+ + Q E+ NG L
Sbjct: 2 SRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYV----NGQLKN 57
Query: 63 YPSEVFLRGSQVLYIS 78
+ F+RG+ VLYIS
Sbjct: 58 KYGDAFIRGNNVLYIS 73
>SPAC2F3.17c [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 75
Score = 55.1 bits (131), Expect = 2e-08
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 6 TASGSFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPS 65
++ FL +IGK V ++L SG+ Y+G L +DG+MN+ + + E+ NG
Sbjct: 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV----NGKKTNVYG 58
Query: 66 EVFLRGSQVLYIS 78
+ F+RG+ VLY+S
Sbjct: 59 DAFIRGNNVLYVS 71
>Hs4507131 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 86
Score = 52.8 bits (125), Expect = 9e-08
Identities = 28/67 (41%), Positives = 41/67 (60%), Gaps = 4/67 (5%)
Query: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
FL + GKPV VKL G+ Y+G L S+DG+MN+ ++ E+ + G L + EV +R
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID----GALSGHLGEVLIR 65
Query: 71 GSQVLYI 77
+ VLYI
Sbjct: 66 CNNVLYI 72
>Hs14755615 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 86
Score = 52.8 bits (125), Expect = 9e-08
Identities = 28/67 (41%), Positives = 41/67 (60%), Gaps = 4/67 (5%)
Query: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
FL + GKPV VKL G+ Y+G L S+DG+MN+ ++ E+ + G L + EV +R
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID----GALSGHLGEVLIR 65
Query: 71 GSQVLYI 77
+ VLYI
Sbjct: 66 CNNVLYI 72
>7303504 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 84
Score = 50.8 bits (120), Expect = 3e-07
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
FL + GKPV VKL G Y+G L S+DG+MN+ ++ E E G L EV +R
Sbjct: 8 FLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNL----GEVLIR 63
Query: 71 GSQVLYI 77
+ VLYI
Sbjct: 64 CNNVLYI 70
>At4g30220 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 88
Score = 49.7 bits (117), Expect = 7e-07
Identities = 25/67 (37%), Positives = 39/67 (57%), Gaps = 4/67 (5%)
Query: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
FL N+ GK V VKL G+ Y+G L S+D +MN+ + E+ + + G L E+ +R
Sbjct: 11 FLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL----GEILIR 66
Query: 71 GSQVLYI 77
+ VLY+
Sbjct: 67 CNNVLYV 73
>SPBC3E7.14 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 78
Score = 49.3 bits (116), Expect = 9e-07
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
FL+ +IGKPV V+L G Y+G L+S+D +MN+ + E + + G L E+ +R
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDL----GEILIR 66
Query: 71 GSQVLYISE 79
+ VL++ E
Sbjct: 67 CNNVLWVGE 75
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,384,024
Number of Sequences: 60738
Number of extensions: 146101
Number of successful extensions: 393
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 12
length of query: 80
length of database: 30,389,216
effective HSP length: 56
effective length of query: 24
effective length of database: 26,987,888
effective search space: 647709312
effective search space used: 647709312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)