ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0724    suspect: LH   A     KOG0533  RNA processing and modification                                RRM motif-containing protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0724  256959  257240 94   
         (94 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR381w [A] KOG0533 RRM motif-containing protein                       47   6e-06

>YDR381w [A] KOG0533 RRM motif-containing protein
          Length = 226

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 37/95 (38%), Positives = 43/95 (44%), Gaps = 10/95 (10%)

Query: 1  MSA-LDQSLDEIIGSAKHARRNNKAG------PKKVSKQVNKSRTRTGAGXXXXXXXXXX 53
          MSA LD+SLDEIIGS K      + G      P++V KQV   R                
Sbjct: 1  MSANLDKSLDEIIGSNKAGSNRARVGGTRGNGPRRVGKQVGSQRRSLPNRRGPIRKNTRA 60

Query: 54 XXXXXXXXXXXXISTR---VNVEGLPRDINQDAVK 85
                       +TR   VNVEGLPRDI QDAV+
Sbjct: 61 PPNAVARVAKLLDTTREVKVNVEGLPRDIKQDAVR 95


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.127    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,514,433
Number of Sequences: 60738
Number of extensions: 67949
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 1
length of query: 94
length of database: 30,389,216
effective HSP length: 70
effective length of query: 24
effective length of database: 26,137,556
effective search space: 627301344
effective search space used: 627301344
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)