ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0729 suspect: LH A KOG0533 RNA processing and modification RRM motif-containing protein

Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0729  258525  258860 112  
         (112 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   
Score E Sequences producing significant alignments: (bits) Value YDR381w [A] KOG0533 RRM motif-containing protein 69 1e-12 >YDR381w [A] KOG0533 RRM motif-containing protein Length = 226 Score = 68.6 bits (166), Expect = 1e-12 Identities = 45/113 (39%), Positives = 57/113 (49%), Gaps = 11/113 (9%) Query: 1 MATITFKNAEQANLAVKKFHNAPIDGGKSKLRLTLIVDPSR---KTLLDRIRPVXXXXXX 57 MA ITFKN E A AV++F+ +PIDGG+S+LRL LIVDP++ K+L DRI+ + Sbjct: 121 MANITFKNGELARRAVERFNGSPIDGGRSRLRLNLIVDPNQRPVKSLADRIKAM------ 174 Query: 58 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEDLDKEMADYFEE 110 SLEDLDKEMADYFE+ Sbjct: 175 --PQKGGNAPRPVKRGPNRKAAMAKSQNKPKREKPAKKSLEDLDKEMADYFEK 225 Database: KOG eukaryal database 04/03 Posted date: Apr 14, 2003 1:07 PM Number of letters in database: 30,389,216 Number of sequences in database: 60,738 Lambda K H 0.316 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,594,276 Number of Sequences: 60738 Number of extensions: 74005 Number of successful extensions: 191 Number of sequences better than 1.0e-05: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189 Number of HSP's gapped (non-prelim): 2 length of query: 112 length of database: 30,389,216 effective HSP length: 88 effective length of query: 24 effective length of database: 25,044,272 effective search space: 601062528 effective search space used: 601062528 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)