ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0729 suspect: LH A KOG0533 RNA processing and modification RRM motif-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0729 258525 258860 112
(112 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
YDR381w [A] KOG0533 RRM motif-containing protein 69 1e-12
>YDR381w [A] KOG0533 RRM motif-containing protein
Length = 226
Score = 68.6 bits (166), Expect = 1e-12
Identities = 45/113 (39%), Positives = 57/113 (49%), Gaps = 11/113 (9%)
Query: 1 MATITFKNAEQANLAVKKFHNAPIDGGKSKLRLTLIVDPSR---KTLLDRIRPVXXXXXX 57
MA ITFKN E A AV++F+ +PIDGG+S+LRL LIVDP++ K+L DRI+ +
Sbjct: 121 MANITFKNGELARRAVERFNGSPIDGGRSRLRLNLIVDPNQRPVKSLADRIKAM------ 174
Query: 58 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEDLDKEMADYFEE 110
SLEDLDKEMADYFE+
Sbjct: 175 --PQKGGNAPRPVKRGPNRKAAMAKSQNKPKREKPAKKSLEDLDKEMADYFEK 225
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,594,276
Number of Sequences: 60738
Number of extensions: 74005
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 30,389,216
effective HSP length: 88
effective length of query: 24
effective length of database: 25,044,272
effective search space: 601062528
effective search space used: 601062528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)