ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0874 good K KOG3902 Transcription Histone acetyltransferase PCAF/SAGA, subunit SUPT3H/SPT3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0874 305245 306228 328
(328 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR392w [K] KOG3902 Histone acetyltransferase PCAF/SAGA subunit ... 436 e-122
SPCC61.02 [K] KOG3902 Histone acetyltransferase PCAF/SAGA subuni... 253 2e-67
Hs4507309 [K] KOG3902 Histone acetyltransferase PCAF/SAGA subuni... 92 1e-18
>YDR392w [K] KOG3902 Histone acetyltransferase PCAF/SAGA subunit SUPT3H/SPT3
Length = 337
Score = 436 bits (1120), Expect = e-122
Identities = 225/337 (66%), Positives = 254/337 (74%), Gaps = 9/337 (2%)
Query: 1 MSDKYKYRVEIQQMMFVSGENNEPPVETTSLIEDIVRGQVVEILLQATRTANCRGSKSIV 60
M DK+KYRVEIQQMMFVSGE N+PPVETTSLIEDIVRGQV+EILLQ+ +TA+ RGS+SI+
Sbjct: 1 MMDKHKYRVEIQQMMFVSGEINDPPVETTSLIEDIVRGQVIEILLQSNKTAHLRGSRSIL 60
Query: 61 PEDVIFLIRHDKAKVNRLRTYLSWKDLRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
PEDVIFLIRHDKAKVNRLRTYLSWKDLRKN
Sbjct: 61 PEDVIFLIRHDKAKVNRLRTYLSWKDLRKNAKDQDASAGVASGTGNPGAGGEDDLKKAGG 120
Query: 121 XXXXXXXXVN-MKVKKSSIKLPWELQFMFNEQPLE-NPXXXXXXXXXXXANMATLKRLKM 178
N MKVKKS IKLPWELQFMFNE PLE N AN+ TLKRLKM
Sbjct: 121 GEKDEKDGGNMMKVKKSQIKLPWELQFMFNEHPLENNDDNDDMDEDEREANIVTLKRLKM 180
Query: 179 ADDRTRGMTKEEYVHWSDCRQASFTFRKSKRFKDWSGISQLIDSKPHDDVIDILGFLTFE 238
ADDRTR MTKEEYVHWSDCRQASFTFRK+KRFKDWSGISQL + KPHDDVIDILGFLTFE
Sbjct: 181 ADDRTRNMTKEEYVHWSDCRQASFTFRKNKRFKDWSGISQLTEGKPHDDVIDILGFLTFE 240
Query: 239 IVCAITETALKIKTRYERIRSMKTQSQPQ-------EYSVGTTRRKKRLFDGPDNVVNPL 291
IVC++TETALKIK R + +++ K +SQ E++ T RKKRLFDGP+NV+NPL
Sbjct: 241 IVCSLTETALKIKQREQVLQTQKDKSQQSSQDNTNFEFASSTLHRKKRLFDGPENVINPL 300
Query: 292 KPEHIEEAWRVLQTVNMKHRALSNYKGGRLSSRTVIM 328
KP HIEEAWRVLQT++M+HRAL+N+KGGRLSS+ +IM
Sbjct: 301 KPRHIEEAWRVLQTIDMRHRALTNFKGGRLSSKPIIM 337
>SPCC61.02 [K] KOG3902 Histone acetyltransferase PCAF/SAGA subunit SUPT3H/SPT3
Length = 307
Score = 253 bits (647), Expect = 2e-67
Identities = 140/324 (43%), Positives = 194/324 (59%), Gaps = 26/324 (8%)
Query: 6 KYRVEIQQMMFVSGENNEPPVETTSLIEDIVRGQVVEILLQATRTANCRGSKSIVPEDVI 65
KYRVEIQQMMF+ GE +P ETT L+E+++RGQV+E+L+QA A RGS+SI ED+
Sbjct: 9 KYRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSITVEDLF 68
Query: 66 FLIRHDKAKVNRLRTYLSWKDLRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 125
FLIRHD+AKVNRL+TYLSWK++RK
Sbjct: 69 FLIRHDRAKVNRLKTYLSWKEVRKKAKEQDANPADTKDLFEE------------------ 110
Query: 126 XXXVNMKVKK-SSIKLPWELQFMFNEQPLENPXXXXXXXXXXXANMATLKRLKMADDRTR 184
V+ K + +++ +PWE++ MF E P+ AT +RLKMAD+RT+
Sbjct: 111 ---VDSKTRSMNAVAMPWEVKNMFTE-PVPETEEFEEDNDTMEMAYATRQRLKMADERTK 166
Query: 185 GMTKEEYVHWSDCRQASFTFRKSKRFKDWSGISQLIDSKPHDDVIDILGFLTFEIVCAIT 244
MT+EEYVHWS+CRQASFT+RK KRF++W G+S L D++P +D++DILGFLTFEIV +T
Sbjct: 167 KMTREEYVHWSECRQASFTYRKGKRFREWCGMSILTDTRPDNDIVDILGFLTFEIVATLT 226
Query: 245 ETALKIKTRYERIRSMKTQSQPQEYSVGTTRRKKRLFDGPDNVVNPLKPEHIEEAWRVLQ 304
E AL +K R +RI++ S + LFDG PL+ H+ EA+R LQ
Sbjct: 227 EEALAVKDRMDRIQN---SSGSGGSHAAHHPKNCSLFDGLTEGRTPLQVSHVLEAFRRLQ 283
Query: 305 TVNMKHRALSNYKGGRLSSRTVIM 328
+ H A+ ++ GG + SR ++
Sbjct: 284 IPDKTHTAMRSFHGGLVKSRVYLI 307
>Hs4507309 [K] KOG3902 Histone acetyltransferase PCAF/SAGA subunit SUPT3H/SPT3
Length = 317
Score = 92.0 bits (227), Expect = 1e-18
Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 30/245 (12%)
Query: 7 YRVEIQQMMFVSGENNEPPVETTSLIEDIVRGQVVEILLQATRTANCRGSKSIVPEDVIF 66
+ E+Q MM+ G+ P ET L+ED+V Q++ +L QA + RG++ I PED++F
Sbjct: 26 FATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLF 85
Query: 67 LIRHDKAKVNRLRTYLSWKDLRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 126
L+R DK K+ RL Y+ +D +
Sbjct: 86 LMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKLSGSNNANKRQKIAQDFL---- 141
Query: 127 XXVNMKVKKSSIKLPWELQFMFNEQPLENPXXXXXXXXXXXANMATLKRLKMADDRTRGM 186
+SI EL MF + ++ +R++ A+ +TR M
Sbjct: 142 ---------NSIDQTGELLAMFEDDEIDE---------------VKQERMERAERQTRIM 177
Query: 187 TKEEYVHWSDCRQASFTFRKSKRFKDWSGISQLIDSKPHDDVIDILGFLTFEIVCAITET 246
+Y + + RQ SF+ +K+ +F+DW S + + KP+ ++IL +L +E V + +
Sbjct: 178 DSAQYAEFCESRQLSFS-KKASKFRDWLDCSSM-EIKPNVVAMEILAYLAYETVAQLVDL 235
Query: 247 ALKIK 251
AL ++
Sbjct: 236 ALLVR 240
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,067,955
Number of Sequences: 60738
Number of extensions: 569564
Number of successful extensions: 1311
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 6
length of query: 328
length of database: 30,389,216
effective HSP length: 107
effective length of query: 221
effective length of database: 23,890,250
effective search space: 5279745250
effective search space used: 5279745250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)