ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0888 good U KOG3315 Intracellular trafficking, secretion, and vesicular transport Transport protein particle (TRAPP) complex subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0888 310453 309716 -246
(246 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR472w [U] KOG3315 Transport protein particle (TRAPP) complex s... 214 1e-55
SPBC1718.05 [U] KOG3315 Transport protein particle (TRAPP) compl... 135 5e-32
At5g58030 [U] KOG3315 Transport protein particle (TRAPP) complex... 122 5e-28
CE22619 [U] KOG3315 Transport protein particle (TRAPP) complex s... 108 7e-24
7303144 [U] KOG3315 Transport protein particle (TRAPP) complex s... 94 2e-19
Hs17482542 [U] KOG3315 Transport protein particle (TRAPP) comple... 88 1e-17
>YDR472w [U] KOG3315 Transport protein particle (TRAPP) complex subunit
Length = 283
Score = 214 bits (544), Expect = 1e-55
Identities = 126/288 (43%), Positives = 171/288 (58%), Gaps = 50/288 (17%)
Query: 1 MAEQIINPSTTHSTKVA-GQGYDYTIGPTQTLPNTSTATTSGTGFVVPTTGIYGQSLISK 59
M+++II PS + GY+YT+GP Q + TS A+T+ +P+ IY +SL+ K
Sbjct: 1 MSQRIIQPSASDQQFPGKSDGYEYTVGPKQAI--TSEASTT----YIPSR-IYSESLLFK 53
Query: 60 EKQVSLSAYAFLFQSIVSYHRDSSKNVQEIERKLNSSGYTIGMRLTEILNFRDSVP---- 115
++ SLSA AFLFQ ++S + K + E KL+ G+ IG+RL E+LNFR SV
Sbjct: 54 RQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSL 113
Query: 116 --------------------NKTGLT------------------NMDSVAGTITNMKRRN 137
N G+ +S++ IT M+RR+
Sbjct: 114 PRASAFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRD 173
Query: 138 LKILETLQYIHLTVWQYLFSRPSNDLVKSSERDNEYMIIDNEPTISQFIQHTSVQCESFT 197
LKIL+ LQ+IH T+W YLF+ S+DLVKSSERDNEYMI+DN PT++QFI +V CE F
Sbjct: 174 LKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGENVSCEYFV 233
Query: 198 CGIIEGFLDMAGFPCHVTSHFVEETGFSNRTVYLIQFDKAVVERENLR 245
CGII+GFL AGFPC VT+H + + G S RTVYLIQFD+ V++RE LR
Sbjct: 234 CGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDREGLR 281
>SPBC1718.05 [U] KOG3315 Transport protein particle (TRAPP) complex subunit
Length = 209
Score = 135 bits (340), Expect = 5e-32
Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 24/199 (12%)
Query: 51 IYGQSLIS-KEKQVSLSAYAFLFQSIVSYHRDSSKNVQEIERKLNSSGYTIGMRLTEILN 109
+Y Q+L + V+LS++AF+F ++ + +QE E KLN GY +G +L E++
Sbjct: 28 VYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVV 87
Query: 110 FRDSVPNKTGLTNMDSVAGTITNMKRRNLKILETLQYIHLTVWQYLFSRPSNDLVKSSER 169
+R+ P +R +IL LQYIH +VW+YLF + ++ L KS E
Sbjct: 88 WRERNP-------------------KRETRILGILQYIHSSVWKYLFGKHADSLEKSKEA 128
Query: 170 DNEYMIIDNEPTISQFI----QHTSVQCESFTCGIIEGFLDMAGFPCHVTSHFVEETGFS 225
+EYMI+DN P +++FI + + C ++ GIIEGFLD A FPC ++H V + +
Sbjct: 129 SDEYMIVDNNPLLNKFISVPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPLSQYP 188
Query: 226 NRTVYLIQFDKAVVERENL 244
RTV LI+ D +V+ RE +
Sbjct: 189 YRTVILIKLDPSVIAREEV 207
>At5g58030 [U] KOG3315 Transport protein particle (TRAPP) complex subunit
Length = 195
Score = 122 bits (306), Expect = 5e-28
Identities = 70/207 (33%), Positives = 113/207 (53%), Gaps = 24/207 (11%)
Query: 41 GTGFVVPTTGIYGQSLISKEKQVSLSAYAFLFQSIVSYHRDSSKNVQEIERKLNSSGYTI 100
G G + + + + L +++VSL+A+AFLF +V Y++ N+ E+ER+L +GY +
Sbjct: 3 GVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAV 62
Query: 101 GMRLTEILNFRDSVPNKTGLTNMDSVAGTITNMKRRNLKILETLQYIHLTVWQYLFSRPS 160
G R+ E+L R+ RR ++L L ++H TVW+ LF + +
Sbjct: 63 GSRVLELLCNRE-------------------KGNRRETRLLGILSFVHSTVWKVLFGKVA 103
Query: 161 NDLVKSSERDNEYMIIDNEPTISQFI----QHTSVQCESFTCGIIEGFLDMAGFPCHVTS 216
+ L K +E ++EYMI + E +++FI + C +F GI++G LD AGFP VT+
Sbjct: 104 DSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTA 163
Query: 217 HFVEETGFSN-RTVYLIQFDKAVVERE 242
HFV G RT LI+F V++RE
Sbjct: 164 HFVPIEGQQRPRTTILIKFADEVLKRE 190
>CE22619 [U] KOG3315 Transport protein particle (TRAPP) complex subunit
Length = 185
Score = 108 bits (270), Expect = 7e-24
Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 29/200 (14%)
Query: 48 TTGIYGQSLISKEKQVSLSAYAFLFQSIVSYHRDSSKNVQEIERKLNSSGYTIGMRLTEI 107
TTGI +SL + +++LS +A LF +V Y ++ S+ V +I K+ S G +G+R+ +I
Sbjct: 4 TTGILDKSLSRGKTEINLSTFAVLFSEMVLYAQNRSETVTDIHDKIASYGKQVGLRMFDI 63
Query: 108 LNFRDSVPNKTGLTNMDSVAGTITNMKRRNLKILETLQYIHLTVWQYLFSRPSNDLVKSS 167
+ R+ +R K+L L +I TVW+ LF + ++ L +S+
Sbjct: 64 ITLREKG-------------------YKRETKLLGMLMFIKSTVWKNLFGKEADKLERSN 104
Query: 168 ERDNEYMIIDNEPTISQFI----QHTSVQCESFTCGIIEGFLDMAGFPCHVTSHFVEETG 223
+ Y++I+ +P ++ +I + C +F GI+E L+ A F C VT+H
Sbjct: 105 DDHCTYLLIEKDPMVNTYISVPRDKGVLNCAAFAAGIVEAILESASFKCKVTAH------ 158
Query: 224 FSNRTVYLIQFDKAVVEREN 243
+ N T Y+IQFD++V+ REN
Sbjct: 159 WHNGTAYVIQFDESVIAREN 178
>7303144 [U] KOG3315 Transport protein particle (TRAPP) complex subunit
Length = 194
Score = 93.6 bits (231), Expect = 2e-19
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 29/200 (14%)
Query: 47 PTTGIYGQSLISKEKQVSLSAYAFLFQSIVSYHRDSSKNVQEIERKLNSSGYTIGMRLTE 106
P + I + L + +VS S A LF IV Y + V E++ +L+ G +G R+ +
Sbjct: 14 PRSNILDRPLSKGKTEVSQSIVALLFSEIVQYSQSRVFTVPELQTRLHDLGQDVGTRIID 73
Query: 107 ILNFRDSVPNKTGLTNMDSVAGTITNMKRRNLKILETLQYIHLTVWQYLFSRPSNDLVKS 166
+ R+ +R K+ + L ++ TVW+ LF + + L +
Sbjct: 74 LYFVRE-------------------RSSKRETKLTQMLLFVKTTVWKNLFGKEAEKLEHA 114
Query: 167 SERDNEYMIIDNEPTISQFI----QHTSVQCESFTCGIIEGFLDMAGFPCHVTSHFVEET 222
++ + Y II+ EP ++ FI S+ C +FT GI+E L GFPC VT+H
Sbjct: 115 NDDERTYYIIEKEPLVNTFISVPKDKGSLNCANFTAGIVEAVLTNCGFPCKVTAH----- 169
Query: 223 GFSNRTVYLIQFDKAVVERE 242
+ T Y+++F+ V+ R+
Sbjct: 170 -WHKGTTYMVKFEDFVIARD 188
>Hs17482542 [U] KOG3315 Transport protein particle (TRAPP) complex subunit
Length = 188
Score = 87.8 bits (216), Expect = 1e-17
Identities = 54/193 (27%), Positives = 100/193 (50%), Gaps = 29/193 (15%)
Query: 54 QSLISKEKQVSLSAYAFLFQSIVSYHRDSSKNVQEIERKLNSSGYTIGMRLTEILNFRDS 113
++L +VSLSA+A LF +V + + +V E++ +L + G +G R+ + L R+
Sbjct: 15 RALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDALVAREK 74
Query: 114 VPNKTGLTNMDSVAGTITNMKRRNLKILETLQYIHLTVWQYLFSRPSNDLVKSSERDNEY 173
RR K+L L ++ VW+ LF + ++ L ++++ +
Sbjct: 75 GA-------------------RRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTF 115
Query: 174 MIIDNEPTISQFI----QHTSVQCESFTCGIIEGFLDMAGFPCHVTSHFVEETGFSNRTV 229
II+ EP I+ +I +++++ C SFT GI+E L +GFP VT+H + T
Sbjct: 116 YIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAH------WHKGTT 169
Query: 230 YLIQFDKAVVERE 242
+I+F++AV+ R+
Sbjct: 170 LMIKFEEAVIARD 182
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,118,416
Number of Sequences: 60738
Number of extensions: 574047
Number of successful extensions: 1821
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1807
Number of HSP's gapped (non-prelim): 7
length of query: 246
length of database: 30,389,216
effective HSP length: 104
effective length of query: 142
effective length of database: 24,072,464
effective search space: 3418289888
effective search space used: 3418289888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)