ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0899 good U KOG3325 Intracellular trafficking, secretion, and vesicular transport Membrane coat complex Retromer, subunit VPS29/PEP11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0899 Similar to YHR012w SP|P38759 PEP11 involved in
vacuolar protein sorting singleton [INTRON]
(243 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR012w [U] KOG3325 Membrane coat complex Retromer subunit VPS29... 230 2e-60
SPAC15E1.06 [U] KOG3325 Membrane coat complex Retromer subunit V... 93 4e-19
7296116 [U] KOG3325 Membrane coat complex Retromer subunit VPS29... 89 7e-18
CE23493 [U] KOG3325 Membrane coat complex Retromer subunit VPS29... 88 1e-17
Hs7706441 [U] KOG3325 Membrane coat complex Retromer subunit VPS... 82 9e-16
Hs17402912 [U] KOG3325 Membrane coat complex Retromer subunit VP... 82 9e-16
At3g47810 [U] KOG3325 Membrane coat complex Retromer subunit VPS... 78 1e-14
Hs22043041 [O] KOG1866 Ubiquitin carboxyl-terminal hydrolase 32 0.62
HsM9506499 [PT] KOG0499 Cyclic nucleotide-gated cation channel C... 30 2.4
Hs21361816 [PT] KOG0499 Cyclic nucleotide-gated cation channel C... 30 2.4
CE23293 [R] KOG1075 FOG: Reverse transcriptase 30 3.1
At1g03530 [S] KOG2236 Uncharacterized conserved protein 30 3.1
Hs22059246 [S] KOG4672 Uncharacterized conserved low complexity ... 30 4.0
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 30 4.0
Hs14149665 [K] KOG1874 KEKE-like motif-containing transcription ... 30 4.0
CE19036 [R] KOG0813 Glyoxylase 30 4.0
YOR033c [L] KOG2518 5'-3' exonuclease 29 5.3
7301746 [KT] KOG4786 Ubinuclein nuclear protein interacting with... 29 6.9
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 28 9.0
Hs7657671 [R] KOG0381 HMG box-containing protein 28 9.0
Hs4826940 [OR] KOG2183 Prolylcarboxypeptidase (angiotensinase C) 28 9.0
At1g19270 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LI... 28 9.0
7301703 [A] KOG1258 mRNA processing protein 28 9.0
>YHR012w [U] KOG3325 Membrane coat complex Retromer subunit VPS29/PEP11
Length = 282
Score = 230 bits (586), Expect = 2e-60
Identities = 125/254 (49%), Positives = 156/254 (61%), Gaps = 19/254 (7%)
Query: 1 MLGNCTKSASFLKFVNTISENIVFVRGEFDPATVSTTKN--------PAEEMPLSTVISQ 52
+LGN TKS FLKFVN IS NI VRGEFD + +TK P EE+P++++I Q
Sbjct: 37 LLGNSTKSYDFLKFVNQISNNITIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQ 96
Query: 53 GPFRIGCCNGYTLVPKNDPLSLLTLARQLDVDILLWGGTHNVEAYTLEGKFFINPGSCTG 112
G +IGCC+GYT+VPKNDPLSLL LARQLDVDILLWGGTHNVEAYTLEGKFF+NPGSCTG
Sbjct: 97 GALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTG 156
Query: 113 AFSTDW-VQEDVEENYK--TSEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGEDK 169
AF+TDW + DVE++ + TSE +P + + + + S E + ++
Sbjct: 157 AFNTDWPIVFDVEDSDEAVTSEVDKPTKENQSEDDDAKGGSTGKEQPGSYTPKEGTAGER 216
Query: 170 ADIIEDKGNSEEHLQEGKEYEHXXXXXXXXXXXXXXXXXXXFCLLDIQDITCTLYIYTYV 229
+ E E +E + FCLLDIQ TCTLYIY YV
Sbjct: 217 ENENESNVKPENQFKEDE--------VDMSDSDINGSNSPSFCLLDIQGNTCTLYIYLYV 268
Query: 230 DNEIKVDKVVYRKD 243
+ E+KVDKVVY K+
Sbjct: 269 NGEVKVDKVVYEKE 282
>SPAC15E1.06 [U] KOG3325 Membrane coat complex Retromer subunit VPS29/PEP11
Length = 187
Score = 92.8 bits (229), Expect = 4e-19
Identities = 49/121 (40%), Positives = 76/121 (62%), Gaps = 10/121 (8%)
Query: 2 LGNCTKSASFLKFVNTISENIVFVRGEFDPATVSTTKNPAEEMPLSTVISQGPFRIGCCN 61
LGN T S S +++ + ++ V+G FD ++ + P++ I+ G F+IG N
Sbjct: 37 LGNLT-STSVYEYLKHVCSDLKLVKGAFDISS---------KAPIAGKITLGSFKIGYTN 86
Query: 62 GYTLVPKNDPLSLLTLARQLDVDILLWGGTHNVEAYTLEGKFFINPGSCTGAFSTDWVQE 121
G+ +VP++ P +L LAR++D DILL+GGTH AY L+G FF+NPGS TGA + V++
Sbjct: 87 GHLVVPQDSPEALSILAREMDADILLFGGTHKFAAYELDGCFFVNPGSATGAPNVSAVED 146
Query: 122 D 122
D
Sbjct: 147 D 147
Score = 36.2 bits (82), Expect = 0.043
Identities = 14/32 (43%), Positives = 21/32 (64%)
Query: 211 FCLLDIQDITCTLYIYTYVDNEIKVDKVVYRK 242
F L+D+Q LY+Y D E++V+K+ YRK
Sbjct: 154 FVLMDVQGAVLILYVYRIFDGEVRVEKMQYRK 185
>7296116 [U] KOG3325 Membrane coat complex Retromer subunit VPS29/PEP11
Length = 182
Score = 88.6 bits (218), Expect = 7e-18
Identities = 46/111 (41%), Positives = 67/111 (59%), Gaps = 11/111 (9%)
Query: 5 CTKSASFLKFVNTISENIVFVRGEFDPATVSTTKNPAEEMPLSTVISQGPFRIGCCNGYT 64
CTK + ++ +++ ++ VRG+FD P V++ G FRIG C+G+
Sbjct: 41 CTKES--YDYLKSLANDVHIVRGDFDENLT---------YPEQKVVTVGQFRIGLCHGHQ 89
Query: 65 LVPKNDPLSLLTLARQLDVDILLWGGTHNVEAYTLEGKFFINPGSCTGAFS 115
+VP+ DP +L + RQLDVDIL+ G T+ EAY KF+INPGS TGAF+
Sbjct: 90 VVPRGDPEALALIQRQLDVDILITGHTYKFEAYEHGNKFYINPGSATGAFN 140
Score = 36.2 bits (82), Expect = 0.043
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 211 FCLLDIQDITCTLYIYTYVDNEIKVDKVVYRK 242
F L+DIQ T Y+Y + +E+KV+++ Y+K
Sbjct: 150 FVLMDIQSTTVVTYVYQLIGDEVKVERIEYKK 181
>CE23493 [U] KOG3325 Membrane coat complex Retromer subunit VPS29/PEP11
Length = 157
Score = 88.2 bits (217), Expect = 1e-17
Identities = 47/113 (41%), Positives = 68/113 (59%), Gaps = 9/113 (7%)
Query: 3 GNCTKSASFLKFVNTISENIVFVRGEFDPATVSTTKNPAEEMPLSTVISQGPFRIGCCNG 62
GN +F ++ T+S ++ VRGEFD T+ + P + V++ G FRIG C+G
Sbjct: 8 GNLCSRETF-DYLRTLSSDVHIVRGEFDDETL--------KYPDTKVVTVGQFRIGVCHG 58
Query: 63 YTLVPKNDPLSLLTLARQLDVDILLWGGTHNVEAYTLEGKFFINPGSCTGAFS 115
+ ++P D L LARQLDVDIL+ G T+ A G+FF++PGS TG+FS
Sbjct: 59 HQIIPWGDQRMLELLARQLDVDILVTGNTYECSAVEKNGRFFVDPGSATGSFS 111
Score = 37.0 bits (84), Expect = 0.025
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 211 FCLLDIQDITCTLYIYTYVDNEIKVDKVVYRK 242
F LLD+Q Y+Y +D+ +KVD+++Y+K
Sbjct: 122 FALLDVQADNVVTYLYRLIDDAVKVDRIIYKK 153
>Hs7706441 [U] KOG3325 Membrane coat complex Retromer subunit VPS29/PEP11
Length = 182
Score = 81.6 bits (200), Expect = 9e-16
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 11/111 (9%)
Query: 5 CTKSASFLKFVNTISENIVFVRGEFDPATVSTTKNPAEEMPLSTVISQGPFRIGCCNGYT 64
CTK + ++ T++ ++ VRG+FD P V++ G F+IG +G+
Sbjct: 41 CTKES--YDYLKTLAGDVHIVRGDFDENL---------NYPEQKVVTVGQFKIGLIHGHQ 89
Query: 65 LVPKNDPLSLLTLARQLDVDILLWGGTHNVEAYTLEGKFFINPGSCTGAFS 115
++P D SL L RQ DVDIL+ G TH EA+ E KF+INPGS TGA++
Sbjct: 90 VIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYN 140
Score = 33.9 bits (76), Expect = 0.21
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 211 FCLLDIQDITCTLYIYTYVDNEIKVDKVVYRK 242
F L+DIQ T Y+Y + +++KV+++ Y+K
Sbjct: 150 FVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 181
>Hs17402912 [U] KOG3325 Membrane coat complex Retromer subunit VPS29/PEP11
Length = 186
Score = 81.6 bits (200), Expect = 9e-16
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 11/111 (9%)
Query: 5 CTKSASFLKFVNTISENIVFVRGEFDPATVSTTKNPAEEMPLSTVISQGPFRIGCCNGYT 64
CTK + ++ T++ ++ VRG+FD P V++ G F+IG +G+
Sbjct: 45 CTKES--YDYLKTLAGDVHIVRGDFDENL---------NYPEQKVVTVGQFKIGLIHGHQ 93
Query: 65 LVPKNDPLSLLTLARQLDVDILLWGGTHNVEAYTLEGKFFINPGSCTGAFS 115
++P D SL L RQ DVDIL+ G TH EA+ E KF+INPGS TGA++
Sbjct: 94 VIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYN 144
Score = 33.9 bits (76), Expect = 0.21
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 211 FCLLDIQDITCTLYIYTYVDNEIKVDKVVYRK 242
F L+DIQ T Y+Y + +++KV+++ Y+K
Sbjct: 154 FVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 185
>At3g47810 [U] KOG3325 Membrane coat complex Retromer subunit VPS29/PEP11
Length = 190
Score = 77.8 bits (190), Expect = 1e-14
Identities = 44/114 (38%), Positives = 64/114 (55%), Gaps = 11/114 (9%)
Query: 14 FVNTISENIVFVRGEFDPATVSTTKNPAEEMPLSTVISQGPFRIGCCNGYTLVPKNDPLS 73
++ TI ++ VRGEFD P + ++ G F++G C+G+ ++P D S
Sbjct: 49 YLKTICPDLHIVRGEFDEDA---------RYPENKTLTIGQFKLGLCHGHQVIPWGDLDS 99
Query: 74 LLTLARQLDVDILLWGGTHNVEAYTLEGKFFINPGSCTGAFSTDWVQEDVEENY 127
L L RQL VDIL+ G TH AY EG INPGS TGA+S+ + +DV ++
Sbjct: 100 LAMLQRQLGVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSS--INQDVNPSF 151
Score = 36.6 bits (83), Expect = 0.033
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 211 FCLLDIQDITCTLYIYTYVDNEIKVDKVVYRK 242
F L+DI +Y+Y +D E+KVDK+ ++K
Sbjct: 151 FVLMDIDGFRAVVYVYELIDGEVKVDKIEFKK 182
>Hs22043041 [O] KOG1866 Ubiquitin carboxyl-terminal hydrolase
Length = 959
Score = 32.3 bits (72), Expect = 0.62
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 102 KFFINPGSCTGAFSTDWVQEDVEENYKTSEQQEPAEASTNGSNQQPXXXXXXXXXPSN-- 159
K + S +++ W+Q+ + E+Y T + E ST + Q+ +
Sbjct: 853 KEYFKENSHHWSWAVQWLQKKMSEHYWTPQSNVSNETSTGKTFQRTISAQDTLAYATALL 912
Query: 160 NDSEKSGEDK-ADIIEDKGNSEEHLQEGKE 188
N+ E+SG ++ N + HLQ+G E
Sbjct: 913 NEKEQSGSSNGSESSPANENGDRHLQQGSE 942
>HsM9506499 [PT] KOG0499 Cyclic nucleotide-gated cation channel CNCG4
Length = 610
Score = 30.4 bits (67), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (52%)
Query: 159 NNDSEKSGEDKADIIEDKGNSEEHLQEGKEYE 190
N D +K EDK EDKG E +G+E E
Sbjct: 517 NEDKQKENEDKQKENEDKGKENEDKDKGREPE 548
>Hs21361816 [PT] KOG0499 Cyclic nucleotide-gated cation channel CNCG4
Length = 809
Score = 30.4 bits (67), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (52%)
Query: 159 NNDSEKSGEDKADIIEDKGNSEEHLQEGKEYE 190
N D +K EDK EDKG E +G+E E
Sbjct: 716 NEDKQKENEDKQKENEDKGKENEDKDKGREPE 747
>CE23293 [R] KOG1075 FOG: Reverse transcriptase
Length = 1042
Score = 30.0 bits (66), Expect = 3.1
Identities = 22/83 (26%), Positives = 35/83 (41%), Gaps = 2/83 (2%)
Query: 109 SCTGAFSTDWVQEDVEENYKTSEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGED 168
S G S + + D EE E+ + EAS NG N ++ +GE+
Sbjct: 282 SDNGEASDNGEESDNEEASDNGEESDNGEASDNGEESDNEEASDNGEESDNGEASDNGEE 341
Query: 169 KADIIEDKGNSEEHLQEGKEYEH 191
+D E++ N E G+E E+
Sbjct: 342 -SDNGEERDNGEAS-DNGEESEN 362
>At1g03530 [S] KOG2236 Uncharacterized conserved protein
Length = 797
Score = 30.0 bits (66), Expect = 3.1
Identities = 20/81 (24%), Positives = 39/81 (47%), Gaps = 3/81 (3%)
Query: 109 SCTGAFSTDWVQEDVEENYKTSEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGED 168
+C+ + V V+++ K+ E + E + S + S+++ E+S ED
Sbjct: 215 ACSIEVGLEKVSLAVDDDEKSDEAK--GEMDSAESESETSSSSASSSDSSSSEEEESDED 272
Query: 169 KADIIEDKGNSE-EHLQEGKE 188
++D E+K + EH+ GKE
Sbjct: 273 ESDKEENKKEEKFEHMVVGKE 293
>Hs22059246 [S] KOG4672 Uncharacterized conserved low complexity protein
Length = 375
Score = 29.6 bits (65), Expect = 4.0
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 124 EENYKTSEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGEDKADIIEDKGNSEEHL 183
++ Y Q+ + ST+ S + P +ND + S + KA+ K N EE
Sbjct: 123 DDGYPEDVDQDKHDDSTDDSQEIPEEGREVEEFSEDNDEDDSDDSKAEKQSQKHNQEELH 182
Query: 184 QEG 186
+G
Sbjct: 183 SDG 185
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 29.6 bits (65), Expect = 4.0
Identities = 13/64 (20%), Positives = 27/64 (41%)
Query: 120 QEDVEENYKTSEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGEDKADIIEDKGNS 179
QED++EN + + E +E + +++ +K G++ ED
Sbjct: 155 QEDLQENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFEDASQY 214
Query: 180 EEHL 183
+E+L
Sbjct: 215 DENL 218
>Hs14149665 [K] KOG1874 KEKE-like motif-containing transcription regulator
(Rlr1)/suppressor of sin4
Length = 1170
Score = 29.6 bits (65), Expect = 4.0
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 113 AFSTDWVQEDVEENYKTSEQQEPAEASTNGSNQQP 147
AFS DW EDV + + +E + A A+T GS P
Sbjct: 669 AFS-DWSDEDVPDRTEVTEAEHTATATTPGSTPSP 702
>CE19036 [R] KOG0813 Glyoxylase
Length = 260
Score = 29.6 bits (65), Expect = 4.0
Identities = 24/105 (22%), Positives = 41/105 (38%), Gaps = 3/105 (2%)
Query: 39 NPAEEMPLSTVISQGP--FRIGCCNGYTLVPKNDPLSLLTLARQLDVDILLWGGTHNVEA 96
NPA + V+ G F GC + ++L + + L V+ ++ G H
Sbjct: 123 NPAADSTSPGVVFTGDTLFIAGCGRFFEGTAPQMDVALNEILKNLPVETQIFPG-HEYTV 181
Query: 97 YTLEGKFFINPGSCTGAFSTDWVQEDVEENYKTSEQQEPAEASTN 141
L+ + PG+ A +W Q +E+ T E +TN
Sbjct: 182 ANLKFACHVEPGNEKAAQKLEWAQRQIEQGGFTVPSTVAEEKATN 226
>YOR033c [L] KOG2518 5'-3' exonuclease
Length = 702
Score = 29.3 bits (64), Expect = 5.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 121 EDVEENYKTSEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGEDKADIIEDKGNSE 180
+D +E+ + +EP S S Q P +N SE+ E +DI ED+ NSE
Sbjct: 467 QDFKEDTNSQSLEEPVSESQL-STQIPSSFITTNLEDDDNLSEEVSEVVSDIEEDRKNSE 525
>7301746 [KT] KOG4786 Ubinuclein nuclear protein interacting with cellular
and viral transcription factors
Length = 570
Score = 28.9 bits (63), Expect = 6.9
Identities = 23/102 (22%), Positives = 47/102 (45%), Gaps = 17/102 (16%)
Query: 95 EAYTLEGKFFINPGSC--------TGAFSTDWVQEDVEENYK--TSEQQEPAEAST---- 140
EA TLEG F+IN G+ + TD + + E + K S E + +S+
Sbjct: 162 EAETLEGGFYINCGALEFKNLTKKSYTTRTDAIIKMPERSRKRMVSSSSESSSSSSGDDD 221
Query: 141 ---NGSNQQPXXXXXXXXXPSNNDSEKSGEDKADIIEDKGNS 179
+G+N++ N++S+ + +++ +ED+ ++
Sbjct: 222 ENDDGNNEEDDESDSEDDSEENDESDSEDDSESESLEDEDSA 263
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 28.5 bits (62), Expect = 9.0
Identities = 13/74 (17%), Positives = 34/74 (45%)
Query: 115 STDWVQEDVEENYKTSEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGEDKADIIE 174
S+D ++ EE K ++E ++ S++ + +ND ++ ED + +
Sbjct: 92 SSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEED 151
Query: 175 DKGNSEEHLQEGKE 188
++ ++++ E E
Sbjct: 152 EESSNKKQKNEETE 165
>Hs7657671 [R] KOG0381 HMG box-containing protein
Length = 764
Score = 28.5 bits (62), Expect = 9.0
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 120 QEDVEENYKTSEQQEPAEASTNG-SNQQPXXXXXXXXXPSNNDSEKSGEDKADIIEDKGN 178
+ED EE+ ++ E E NG S++ + D +++ ED D +D+ +
Sbjct: 678 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 737
Query: 179 SEEHLQEGK 187
E+ E +
Sbjct: 738 DEDEDNESE 746
>Hs4826940 [OR] KOG2183 Prolylcarboxypeptidase (angiotensinase C)
Length = 496
Score = 28.5 bits (62), Expect = 9.0
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 21 NIVFVRGEFDPATVSTTKNPAEEMPLSTVISQGPFRIGCCNGYTLVPKNDPLSLLTLARQ 80
NIVF GE DP + + ++ IS+G + L DP+S+L LAR
Sbjct: 421 NIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNAL----DPMSVL-LARS 475
Query: 81 LDV 83
L+V
Sbjct: 476 LEV 478
>At1g19270 [TZ] KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins
Length = 532
Score = 28.5 bits (62), Expect = 9.0
Identities = 13/45 (28%), Positives = 20/45 (43%), Gaps = 1/45 (2%)
Query: 125 ENYKT-SEQQEPAEASTNGSNQQPXXXXXXXXXPSNNDSEKSGED 168
+NY T S EP+ A T+ N +P N +++ ED
Sbjct: 29 DNYPTASHDDEPSAADTDADNDEPHHTQEPSTSEDNTSNDQENED 73
>7301703 [A] KOG1258 mRNA processing protein
Length = 1009
Score = 28.5 bits (62), Expect = 9.0
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 15/107 (14%)
Query: 128 KTSEQQEPAEASTNGSNQQPX--XXXXXXXXPSNNDSEKSGEDKADIIEDKGNSEEHLQE 185
K+SEQ P ++ ++ QP P EK + + +DK N+++ +E
Sbjct: 242 KSSEQYNPGSPTSESNDAQPSEKKLKVEESEPKEKKKEKERDKDKEKDKDKDNNKDKEKE 301
Query: 186 GKEYEHXXXXXXXXXXXXXXXXXXXFCLLDIQDITCTLYIYTYVDNE 232
K+ D D T Y+ YVDNE
Sbjct: 302 RKKLPDLDKYWRAVKE-------------DSTDFTGWTYLLQYVDNE 335
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,973,326
Number of Sequences: 60738
Number of extensions: 555244
Number of successful extensions: 1408
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 41
length of query: 243
length of database: 30,389,216
effective HSP length: 103
effective length of query: 140
effective length of database: 24,133,202
effective search space: 3378648280
effective search space used: 3378648280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)