ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV0912 suspect: LH S KOG4674 Function unknown Uncharacterized conserved coiled-coil protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV0912 316716 317576 287
(287 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c [S] KOG4674 Uncharacterized conserved coiled-coil pr... 53 4e-07
7299992 [Z] KOG1003 Actin filament-coating protein tropomyosin 53 6e-07
>SPAC1F3.06c [S] KOG4674 Uncharacterized conserved coiled-coil protein
Length = 1957
Score = 53.1 bits (126), Expect = 4e-07
Identities = 53/228 (23%), Positives = 96/228 (41%), Gaps = 15/228 (6%)
Query: 53 NRMVRERVDAIDDQVRRTQMDLESLVSRSSNNNKHLQSLLLSSKDIKELHDVLDKLSVQQ 112
N + E +++ Q L V + N ++ SL S K + E H L+
Sbjct: 569 NNELSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELEN----N 624
Query: 113 HEQMEKN-RDVESVLTRL-MEKQSLELKSSMENVEIQTLEQKISQLEAKSGKLESLDAQV 170
H+ + K +D S L +L +E+ + E K S TL + + L K KLE + +
Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKES-------TLSDENNDLRTKLLKLEESNKSL 677
Query: 171 IAKEKQLAIIETKLQERKE--RFDELRQRAKEVQSSLQDDLLTRYKTVHDTMSVSMANLA 228
I K++ + +E +Q KE R E R ++++ +++ K H+T+ +L
Sbjct: 678 IKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLH 737
Query: 229 NGSRPAGNTSRVASLLRNKYMNDTFNGNRRVISLNEPRPSSSSAFDSI 276
+ A NT+ + S K D V +L + + +F S+
Sbjct: 738 SSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSL 785
>7299992 [Z] KOG1003 Actin filament-coating protein tropomyosin
Length = 566
Score = 52.8 bits (125), Expect = 6e-07
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 54 RMVRERVDAIDDQVRRTQMDLESLVSRSSNNNKHLQSLLLSSKDIKELHDVLDKLSVQQH 113
R +++++ +++++ +TQ L + + NK LQ++ S L DVL K Q
Sbjct: 44 RQLQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNMTTSIPQ-GTLLDVLKKKMRQTK 102
Query: 114 EQMEKNRDV-----ESVLTRLMEKQSLELKSSMENVEIQTLEQKISQLEAKSG----KLE 164
E+MEK +D + + ++ ++ E + + N IQ LE+ + + E + G KL
Sbjct: 103 EEMEKYKDECEEFHKRLQLEVVRREEAESEVAALNRRIQLLEEDLERSEERLGSATAKLS 162
Query: 165 SLDAQVIAKEKQLAIIETKLQERKERFDELRQRAKEVQSSLQDDLLTRYKTVHDTMSVSM 224
E+ I+E + +ER D L + KE + L ++ +Y V +++
Sbjct: 163 EASQAADESERARKILENRALADEERMDALENQLKEAR-FLAEEADKKYDEVARKLAMVE 221
Query: 225 ANLANGSRPA 234
A+L A
Sbjct: 222 ADLERAEERA 231
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.309 0.126 0.322
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,816,780
Number of Sequences: 60738
Number of extensions: 557796
Number of successful extensions: 4050
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4041
Number of HSP's gapped (non-prelim): 7
length of query: 287
length of database: 30,389,216
effective HSP length: 105
effective length of query: 182
effective length of database: 24,011,726
effective search space: 4370134132
effective search space used: 4370134132
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)