ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0924    good          U     KOG3202  Intracellular trafficking, secretion, and vesicular transport  SNARE protein TLG1/Syntaxin 6

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0924  320167  320859 231  
         (231 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR468c [U] KOG3202 SNARE protein TLG1/Syntaxin 6                     147   9e-36
SPBC36B7.07 [U] KOG3202 SNARE protein TLG1/Syntaxin 6                  77   2e-14
SPAC6F12.03c [U] KOG3202 SNARE protein TLG1/Syntaxin 6                 50   2e-06

>YDR468c [U] KOG3202 SNARE protein TLG1/Syntaxin 6
          Length = 224

 Score =  147 bits (372), Expect = 9e-36
 Identities = 81/212 (38%), Positives = 122/212 (57%), Gaps = 11/212 (5%)

Query: 2   DPFIQVFKDTEEQLNQLLQILDRKKKGRSNTXXXXXXXXXXXXXXXXQDLNESIEMMKQE 61
           DPF QV KDT+EQLN++   + R      +                  DL+ SI +MK++
Sbjct: 6   DPFQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD 65

Query: 62  QAIPEYEIQTREKSMANLESKLKQCQSLNIETTRDTDAATQSSLLPQQQQRGDSFDLDIE 121
           +     ++  RE  + N++ +L    +L +   R    +TQ+++  ++     + +    
Sbjct: 66  E---NEDVSGREAQVKNIKQQL---DALKLRFDRRIQESTQTTIPLEETVENSTLN---- 115

Query: 122 ATAGTDQSDAANHDAVQEQLLREQDNQLDMIHQTMQNIHLQASTMGQELTEQGMILEEMD 181
            T+  + +D    +  QEQ+LREQD  LD IH+TMQN+H+QA TMG EL  QG +L+ MD
Sbjct: 116 -TSMAENNDGGMSNPFQEQMLREQDVHLDGIHKTMQNLHIQAQTMGDELENQGQLLDNMD 174

Query: 182 GNVDGVMNKLSRGRRQLEWVYEHNKERVNDCC 213
             +DGV+NKL+RGRRQLEWVYE NKE+ +DCC
Sbjct: 175 EGMDGVVNKLARGRRQLEWVYEKNKEKYDDCC 206


>SPBC36B7.07 [U] KOG3202 SNARE protein TLG1/Syntaxin 6
          Length = 225

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 55/218 (25%), Positives = 107/218 (48%), Gaps = 19/218 (8%)

Query: 2   DPFIQVFKDTEEQLNQLLQILDRKKKGRSN---TXXXXXXXXXXXXXXXXQDLNESIEM- 57
           DPF +V  D   Q+ Q+ ++ +     R++   +                +DL  ++E+ 
Sbjct: 3   DPFYEVKADASNQMEQVRKLYNSFMAARNSGVLSPNTELTYAIDELSETLKDLKAAVEIA 62

Query: 58  MKQEQ--AIPEYEIQTREKSMANLESKLKQCQSLNIETTRDTDAATQSSLLPQQQQRGDS 115
           MK  +   + E E+++R + ++ L+ +L   Q L +     T  +T+             
Sbjct: 63  MKNSEHFGLDEEELKSRRRFVSELDIELNNIQ-LKMGAAPSTPVSTEP------------ 109

Query: 116 FDLDIEATAGTDQSDAANHDAVQEQLLREQDNQLDMIHQTMQNIHLQASTMGQELTEQGM 175
           + +D  A+AG  + D A +   QEQL ++QD  LD ++ T+ NI  QA+ MG+EL +Q  
Sbjct: 110 YTVDNGASAGLSEEDHAVNRQYQEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQAD 169

Query: 176 ILEEMDGNVDGVMNKLSRGRRQLEWVYEHNKERVNDCC 213
           +L+ +D +++   +KL RG ++L+     + +  + CC
Sbjct: 170 LLDTLDNSIETTNSKLRRGMKRLKDFTIASADSKSGCC 207


>SPAC6F12.03c [U] KOG3202 SNARE protein TLG1/Syntaxin 6
          Length = 247

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 25/184 (13%)

Query: 49  QDLNESIEMMKQEQAIPEYEIQTREKSMANLESKLKQCQ--------------------S 88
           Q LNE    +++   IPEY ++  E  +  ++ +L+  +                    S
Sbjct: 44  QKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQRRLESAEEEFEKQRRASSIPADGTSAFS 103

Query: 89  LNIETTRDTDAATQSSLLPQQQQRGDSFDLDIEATAGTDQSDAANHDA-----VQEQLLR 143
            N +     +  T    L +     +  D+++EA    D +D    +      + +Q+L 
Sbjct: 104 ANPQVASTNNKLTPLPSLQKTTSSSEGSDIEMEAMYPVDGNDPDPINVNVLAQMHQQMLN 163

Query: 144 EQDNQLDMIHQTMQNIHLQASTMGQELTEQGMILEEMDGNVDGVMNKLSRGRRQLEWVYE 203
           EQ+  L  I  ++Q        M  EL+EQ ++L+ M+ + D +  +    + +L  V  
Sbjct: 164 EQEESLGGIEASVQRQKRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKNRLNKVSR 223

Query: 204 HNKE 207
             K+
Sbjct: 224 KAKQ 227


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,383,608
Number of Sequences: 60738
Number of extensions: 362194
Number of successful extensions: 1492
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 3
length of query: 231
length of database: 30,389,216
effective HSP length: 103
effective length of query: 128
effective length of database: 24,133,202
effective search space: 3089049856
effective search space used: 3089049856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)