ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV0990    suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV0990  343965 342940 -342 
         (342 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPR158w [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...    55   2e-07

>YPR158w [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 252

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 34  YQVQHLPNEIIVDLKKTAPKETIEHHILSHVRNFQDT--IPRYKLVTDWLGNQYYVENDI 91
           + V+ +    I+ L K    + I   +   +    +   IP Y+L++D  GNQ YVE  +
Sbjct: 48  FSVRKVNQSYIISLHKEITCQLIAEIVKQKLSRIWEKVYIPSYELISDKDGNQIYVEQSV 107

Query: 92  NQETIFNEVLRSINWTQFGINMCKKLFRDYDIQLKHDGKELRVTSKMDGIDQIFELNEEV 151
           ++  + +E++  ++     I   + LF DY ++L      + ++S  D   + F  N  +
Sbjct: 108 DENRLTSEIMEKLDPNNIDIEAIEILFDDYHLELSRLTNGIIISSANDHFYREFSFNNII 167

Query: 152 DD-VEIMGLQLSDDLHDAV 169
           DD  +I G  +S D  D +
Sbjct: 168 DDNFKICGTSMSADSFDKI 186


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,808,023
Number of Sequences: 60738
Number of extensions: 804783
Number of successful extensions: 5432
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5431
Number of HSP's gapped (non-prelim): 1
length of query: 342
length of database: 30,389,216
effective HSP length: 107
effective length of query: 235
effective length of database: 23,890,250
effective search space: 5614208750
effective search space used: 5614208750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)