ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1035 good A KOG0152 RNA processing and modification Spliceosomal protein FBP11/Splicing factor PRP40
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1035 357695 358999 435
(435 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR152c [A] KOG0152 Spliceosomal protein FBP11/Splicing factor P... 174 3e-43
At3g19840 [K] KOG0155 Transcription factor CA150 74 3e-13
SPAC13C5.02 [K] KOG0155 Transcription factor CA150 58 3e-08
YKL012w [A] KOG0152 Spliceosomal protein FBP11/Splicing factor P... 52 2e-06
>YPR152c [A] KOG0152 Spliceosomal protein FBP11/Splicing factor PRP40
Length = 465
Score = 174 bits (440), Expect = 3e-43
Identities = 115/390 (29%), Positives = 197/390 (50%), Gaps = 31/390 (7%)
Query: 3 EWKRFKDPSGNFYYFNTRSKVSTKEKP--KEFGSQQAGMKEL---RVPVFCLPLRNYWNL 57
EW+ FK P+G YY+N +K S EKP K+ + ++ KE R P F L L N W+L
Sbjct: 4 EWQEFKTPAGKKYYYNKNTKQSRWEKPNLKKGSNLESNAKESQTERKPTFSLELVNGWHL 63
Query: 58 VICKDGSKFFHNDESNVSQFKLA---DDESKALLDKVDTSLLALLIGVARGFNLRNDRDV 114
+I DG+K + ND+S + ++ D ++L++ +D L LLIGVARG+ +R +
Sbjct: 64 IIYNDGTKLYFNDDSKEFKNDISQEDDSRCRSLIESLDKEKLVLLIGVARGYTMREE--- 120
Query: 115 YGEIRDVLQAKLDSND--KEQNDITEERPQVTNSNVDTEDKSESSN---ILXXXXXXXXX 169
+I +L++ + K D E + +++ D + + S+ +
Sbjct: 121 --DIDKILESCNEEIHLFKRNQDEVERKDEISEEAGDVKSPLQESHTGLVSGYGSSSGEE 178
Query: 170 XXXXXXXXXXKNDPSSI--DVKEEDTLPSLNNTEIESK--FIQLLNEIQLDPYSTWSIQA 225
+N+ + D+ D L ++ +I+ + F +L + +LD +STWS+Q+
Sbjct: 179 DEEEDEEEDEENEEQIVNQDISIIDDLNRIDTDDIDERNIFFELFDRYKLDKFSTWSLQS 238
Query: 226 KRIMHDPRYYLITSNDKRDELFQTWCXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLEPT 285
K+I +DP +Y I + R+ LF+ WC LEPT
Sbjct: 239 KKIENDPDFYKIRDDTVRESLFEEWCGERSGNATAEESDSEDNSEDDSE------VLEPT 292
Query: 286 KYHYLAHIISKA-NITPETLFSNIKKENKSLFKELEINKTL-TKKEQEQFASKVIAYYKR 343
KYHYLA I++ A I P+T+ +I+K+ K+L+K +I + + +K++Q++F S+++ YYK
Sbjct: 293 KYHYLAQIVANAGTIAPDTIPQDIRKQQKALYKAYKIKEYIPSKRDQDKFVSQLLFYYKT 352
Query: 344 MDNLQRTELFKKMMKNKLR-FPPISEKLSQ 372
D QR E+F +++ R F E L Q
Sbjct: 353 FDLEQRKEIFCDCLRDHERDFTGAVESLRQ 382
>At3g19840 [K] KOG0155 Transcription factor CA150
Length = 830
Score = 74.3 bits (181), Expect = 3e-13
Identities = 63/264 (23%), Positives = 114/264 (42%), Gaps = 19/264 (7%)
Query: 1 MSEWKRFKDPSGNFYYFNTRSKVSTKEKPKEFGSQQAGMKELRVPVFCLPLRNYWNLVIC 60
+ W K +G YY+N+ + ST EKP FG + + +PV LP + W LV
Sbjct: 243 LDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSILPGTD-WALVST 301
Query: 61 KDGSKFFHNDESNVSQFKL---ADDESKALLDKVDTSLLAL----LIGVARGFNLRNDRD 113
DG K+++N+++ VS +++ D K L ++ S+ ++ L +
Sbjct: 302 NDGKKYYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLTEKGSDLTSLSAPA 361
Query: 114 VYGEIRDVLQAKLDSNDKEQNDITEERPQVTNSNVDTEDKSESSNILXXXXXXXXXXXXX 173
+ RD K + D+ +++ + V + SE+++
Sbjct: 362 ISNGGRDAASLKTTNFGSSALDLVKKKLHDSGMPVSSTITSEANS--GKTTEVTPSGESG 419
Query: 174 XXXXXXKNDP-------SSIDVKEEDTLPSLNNTEIESKFIQLLNEIQLDPYSTWSIQAK 226
K+ P SS D ++ED+ PS E +F ++L E + P+S W +
Sbjct: 420 NSTGKVKDAPGAGALSDSSSDSEDEDSGPS--KEECSKQFKEMLKERGIAPFSKWEKELP 477
Query: 227 RIMHDPRYYLITSNDKRDELFQTW 250
+I+ DPR+ I S+ R LF+ +
Sbjct: 478 KIIFDPRFKAIPSHSVRRSLFEQY 501
>SPAC13C5.02 [K] KOG0155 Transcription factor CA150
Length = 411
Score = 57.8 bits (138), Expect = 3e-08
Identities = 63/293 (21%), Positives = 117/293 (39%), Gaps = 55/293 (18%)
Query: 4 WKRFKDPSGNFYYFNTRSKVSTKEKPK----------------------------EFGSQ 35
W K PSG YY+N K ST ++P E +
Sbjct: 9 WTEHKAPSGIPYYWNAELKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEE 68
Query: 36 QAGMKELRV-----PVFC--LPLRNYWNLVICKDGSKFFHNDESNVSQFKLADDESKAL- 87
+ ++LR P F +P + W +V K FFHN +S+ S ++ + SK L
Sbjct: 69 RKNSRDLRKQLPDRPKFKKRIPNNDSWVVVFTKKNRYFFHNLKSHESYWEPPLEISKDLK 128
Query: 88 ---------LDKVDTSLLALLIGVARGFNLRNDRDVYGEIRDVLQAKLDSNDKEQNDITE 138
+ K + + G + R + EI + + L+ + +E +E
Sbjct: 129 ILRLPIRKQISKDSSQSQNVDSGKTNHEEIHESRHLQTEIEE--PSGLEESSEESVLYSE 186
Query: 139 ERPQVTNSNVDTEDKSESSNILXXXXXXXXXXXXXXXXXXXKNDPSSIDVKEEDTLPSLN 198
E + ++ D E+KS S+ L ++ S D++E+ T +L+
Sbjct: 187 EFYEKSDEEED-EEKSHSAEELEFGEEDIMYQLQQLD-----DETVSYDIQEQAT--NLS 238
Query: 199 NTEIESKFIQLLNEIQLDPYSTWSIQAKRIMHDPRYYLITSNDKRDELFQTWC 251
+ F +LL + + Y W + +++ D R+Y++ S ++R E+F+ +C
Sbjct: 239 TDDARRVFTELLKDKNIGAYQPWELVYPKLLDDDRFYVLDSGERRKEVFEEYC 291
>YKL012w [A] KOG0152 Spliceosomal protein FBP11/Splicing factor PRP40
Length = 583
Score = 51.6 bits (122), Expect = 2e-06
Identities = 30/85 (35%), Positives = 40/85 (46%), Gaps = 10/85 (11%)
Query: 1 MSEWKRFKDPSGNFYYFNTRSKVSTKEKPKEFGSQQAGMKELRVPVFCLPLRNYWNLVIC 60
MS WK KD SG YY+NT +K ST EKPKE SQ+ L N W
Sbjct: 1 MSIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEE----------LLLRENGWKAAKT 50
Query: 61 KDGSKFFHNDESNVSQFKLADDESK 85
DG +++N + + + + E K
Sbjct: 51 ADGKVYYYNPTTRETSWTIPAFEKK 75
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,150,225
Number of Sequences: 60738
Number of extensions: 820049
Number of successful extensions: 2355
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2342
Number of HSP's gapped (non-prelim): 9
length of query: 435
length of database: 30,389,216
effective HSP length: 109
effective length of query: 326
effective length of database: 23,768,774
effective search space: 7748620324
effective search space used: 7748620324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)