ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1070 check: MH U KOG0277 Intracellular trafficking, secretion, and vesicular transport Peroxisomal targeting signal type 2 receptor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1070 371642 372757 372
(372 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR142c [U] KOG0277 Peroxisomal targeting signal type 2 receptor 488 e-138
At1g29260 [U] KOG0277 Peroxisomal targeting signal type 2 receptor 221 1e-57
Hs4505731 [U] KOG0277 Peroxisomal targeting signal type 2 receptor 176 4e-44
SPAP17D4.01 [U] KOG0277 Peroxisomal targeting signal type 2 rece... 152 1e-36
7295052 [U] KOG0277 Peroxisomal targeting signal type 2 receptor 133 4e-31
SPAC29A4.18 [B] KOG0264 Nucleosome remodeling factor subunit CAF... 71 3e-12
Hs5032027 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 66 7e-11
7299974 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NU... 66 7e-11
7301821 [S] KOG0269 WD40 repeat-containing protein 66 9e-11
SPCC1672.10 [B] KOG0264 Nucleosome remodeling factor subunit CAF... 65 2e-10
CE11860 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NU... 64 5e-10
Hs14149987 [S] KOG0269 WD40 repeat-containing protein 63 8e-10
CE16234 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NU... 63 8e-10
Hs4506439 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 62 1e-09
At2g16780 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 61 3e-09
Hs22048320 [B] KOG0264 Nucleosome remodeling factor subunit CAF1... 59 9e-09
At4g35050 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 59 2e-08
At1g20540 [S] KOG1007 WD repeat protein TSSC1 WD repeat superfamily 57 3e-08
7296187 [S] KOG0271 Notchless-like WD40 repeat-containing protein 57 3e-08
Hs4758558 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4... 57 6e-08
ECU07g0750 [B] KOG0264 Nucleosome remodeling factor subunit CAF1... 55 2e-07
SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein 55 2e-07
7290895 [R] KOG0286 G-protein beta subunit 55 2e-07
At1g76260 [S] KOG1007 WD repeat protein TSSC1 WD repeat superfamily 53 6e-07
CE17845 [R] KOG0286 G-protein beta subunit 53 8e-07
At4g29730 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 52 1e-06
At2g19520 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 52 2e-06
YLR429w [Z] KOG0303 Actin-binding protein Coronin contains WD40 ... 51 2e-06
YDR030c [R] KOG4155 FOG: WD40 repeat 51 2e-06
YCR084c [R] KOG0266 WD40 repeat-containing protein 51 2e-06
7297305 [T] KOG0279 G protein beta subunit-like protein 51 2e-06
SPAC630.14c [R] KOG0266 WD40 repeat-containing protein 50 4e-06
7301796 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (... 50 4e-06
7290743 [E] KOG0280 Uncharacterized conserved protein 50 4e-06
YCR072c [S] KOG0271 Notchless-like WD40 repeat-containing protein 50 7e-06
Hs4758560 [A] KOG0265 U5 snRNP-specific protein-like factor and ... 50 7e-06
Hs16554627 [R] KOG0266 WD40 repeat-containing protein 50 7e-06
Hs13629793 [A] KOG0265 U5 snRNP-specific protein-like factor and... 50 7e-06
Hs13376761 [S] KOG0293 WD40 repeat-containing protein 50 7e-06
7296695 [A] KOG0284 Polyadenylation factor I complex subunit PFS2 50 7e-06
YLR208w [U] KOG1332 Vesicle coat complex COPII subunit SEC13 49 9e-06
At4g35370 [S] KOG0270 WD40 repeat-containing protein 49 9e-06
>YDR142c [U] KOG0277 Peroxisomal targeting signal type 2 receptor
Length = 375
Score = 488 bits (1256), Expect = e-138
Identities = 235/381 (61%), Positives = 286/381 (74%), Gaps = 17/381 (4%)
Query: 1 MLKYHMKGYSGYGVAYSPFYDNKLAVASGSNFGLVGNGKLIILDIMPNGQLVESNSFLTQ 60
ML+YHM+G+SGYGV YSPF+DN+LAVA+GSNFGLVGNGKL IL+I +G++VE NSFLTQ
Sbjct: 1 MLRYHMQGFSGYGVQYSPFFDNRLAVAAGSNFGLVGNGKLFILEIDRSGRIVEVNSFLTQ 60
Query: 61 DGLFDLAWNESHENQCLVAQGDGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMF 120
D LFDLAWNESHENQ LVAQGDG+LRLFD K++PIAI+KEH+REVFSCNWN++ +Q F
Sbjct: 61 DCLFDLAWNESHENQVLVAQGDGTLRLFDTTFKEFPIAIFKEHEREVFSCNWNLVNRQNF 120
Query: 121 VSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNK 180
+SSSWDG +K+WS +R QSLMT++P L T V P+ + +K N+
Sbjct: 121 LSSSWDGSIKIWSPLRKQSLMTLTPR------PLEITKMVDPLNAIILKKKSFTGISKNR 174
Query: 181 ECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRP 240
C+YQA FSPHD NLVL SGNS+ SL+D+R+P +G Q+ FL H G EALTCDFNKYRP
Sbjct: 175 NCVYQAQFSPHDQNLVLSCSGNSYASLFDIRLP-SGKNQNNFLVHSGLEALTCDFNKYRP 233
Query: 241 HIIATGGVDKMIKVWDLRMCRKMLS---------QGHQPININEI-QGHELAVRKVTWSP 290
+++ATGGVD I++WD+RM K S Q H INEI H LA+RKVTWSP
Sbjct: 234 YVVATGGVDNAIRIWDIRMLNKNESATIKRTVPGQLHNSSCINEIPNAHGLAIRKVTWSP 293
Query: 291 HHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLW 350
HHSN+L+S SYDMTCR+W DLS+DG T KTNS D G F F +HSEFVFGADWSLW
Sbjct: 294 HHSNILMSASYDMTCRIWRDLSNDGAKETYKTNSTDATKGSIFNFTQHSEFVFGADWSLW 353
Query: 351 GTPGFVASTGWDGQVCIWNGI 371
G PG+VAST WDG + +WNG+
Sbjct: 354 GKPGYVASTAWDGNLFVWNGL 374
>At1g29260 [U] KOG0277 Peroxisomal targeting signal type 2 receptor
Length = 317
Score = 221 bits (563), Expect = 1e-57
Identities = 127/365 (34%), Positives = 201/365 (54%), Gaps = 69/365 (18%)
Query: 9 YSGYGVAYSPFYDNKLAVASGSNFGLVGNGKLIILDIMPNGQ-LVESNSFLTQDGLFDLA 67
++GY V +SPFY+++LAVA+ NFG++GNG++ +L++ P + ES S+ T D ++D+
Sbjct: 8 FNGYSVKFSPFYESRLAVATAQNFGILGNGRIHVLELAPGAPGVTESVSYDTADAVYDVC 67
Query: 68 WNESHENQCLVAQGDGSLRLFDIKL--KDYPIAIYKEHQREVFSCNWNMIQKQMFVSSSW 125
W+ESH++ + A GDGS++++D L PI ++EH REV S ++N ++ F++SSW
Sbjct: 68 WSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSFLTSSW 127
Query: 126 DGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNKECIYQ 185
D VKLW++ RP S+ T KEH + C+YQ
Sbjct: 128 DDTVKLWAMDRPASVRTF---------------------------KEHAY------CVYQ 154
Query: 186 ATFSPHDPNLVLCSSGNSFISLYDLRVPNNG--LPQHQFLGHGGFEALTCDFNKYRPHII 243
A ++P ++ +SG+ + ++D+R P + +P H FE L+CD+NKY I+
Sbjct: 155 AVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHD------FEILSCDWNKYDDCIL 208
Query: 244 ATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDM 303
AT VDK +KVWD+R R + + + GH AVRKV +SPH +++ S SYDM
Sbjct: 209 ATSSVDKTVKVWDVRSYR---------VPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDM 259
Query: 304 TCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGTPGFVASTGWDG 363
+ +W + +D L G+ + H+EF G D S+ G +ASTGWD
Sbjct: 260 SVCLWDYMVED--ALVGR-------------YDHHTEFAVGIDMSVL-VEGLMASTGWDE 303
Query: 364 QVCIW 368
V +W
Sbjct: 304 LVYVW 308
>Hs4505731 [U] KOG0277 Peroxisomal targeting signal type 2 receptor
Length = 323
Score = 176 bits (447), Expect = 4e-44
Identities = 118/365 (32%), Positives = 177/365 (48%), Gaps = 68/365 (18%)
Query: 8 GYSGYGVAYSPFYDNKLAVASGSNFGLVGNGKLIILDIMPNGQLVESNSFLTQDGLFDLA 67
G GY +SP+ +LA A+ ++G+ G G L+ILD G L SF DGLFD+
Sbjct: 16 GRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAG-LRLFRSFDWNDGLFDVT 74
Query: 68 WNESHENQCLVAQGDGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQ-KQMFVSSSWD 126
W+E++E+ + GDGSL+L+D P+ +YKEH +EV+S +W+ + +Q+ VS SWD
Sbjct: 75 WSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWD 134
Query: 127 GKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNKECIYQA 186
VKLW +SL T G++ IY
Sbjct: 135 QTVKLWDPTVGKSLCTFR---------------------------------GHESIIYST 161
Query: 187 TFSPHDPNLVLCSSGNSFISLYDLRVPNNG--LPQHQFLGHGGFEALTCDFNKYRPHIIA 244
+SPH P +SG+ + ++D++ +P HQ E L+CD+ KY +++
Sbjct: 162 IWSPHIPGCFASASGDQTLRIWDVKAAGVRIVIPAHQ------AEILSCDWCKYNENLLV 215
Query: 245 TGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMT 304
TG VD ++ WDLR R QP + E+ GH A+R+V +SP H+++L S SYD T
Sbjct: 216 TGAVDCSLRGWDLRNVR-------QP--VFELLGHTYAIRRVKFSPFHASVLASCSYDFT 266
Query: 305 CRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGTPGFVASTGWDGQ 364
R W D T + H+EF G D+SL +P VA WD
Sbjct: 267 VRFWNFSKPDSLLETVE---------------HHTEFTCGLDFSL-QSPTQVADCSWDET 310
Query: 365 VCIWN 369
+ I++
Sbjct: 311 IKIYD 315
>SPAP17D4.01 [U] KOG0277 Peroxisomal targeting signal type 2 receptor
Length = 297
Score = 152 bits (383), Expect = 1e-36
Identities = 103/358 (28%), Positives = 167/358 (45%), Gaps = 67/358 (18%)
Query: 14 VAYSPFYDNKLAVASGSNFGLVGNGKLIILDIMPNGQLVESNSFLTQDGLFDLAWNESHE 73
V +SP +NK+AVA+ +++GL G+G+L I D+ P G V + +D LF + W+++ E
Sbjct: 3 VQFSPLVENKIAVAAVTHYGLGGSGRLYIHDVTPKGIQV-CQHYDVEDSLFGVRWSQNCE 61
Query: 74 NQCLVAQGDGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWS 133
NQ GDGSLRLFD+ + PI +KEH+ E+ + + N + +++ V+ SWDG +KLW
Sbjct: 62 NQVYACCGDGSLRLFDLTMPSKPIHKWKEHKAEIVAIDTNTVDRRIVVTGSWDGTIKLWL 121
Query: 134 LMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNKECIYQATFSPHDP 193
P S+ T++ +G+ I P
Sbjct: 122 GNLPNSVQTLN--------------------------------NGSNSRILTVATHYSSP 149
Query: 194 NLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTC-DFNKYRPHIIATGGVDKMI 252
NL+ +S + +D R +F+ +TC +++K ++ T + ++
Sbjct: 150 NLLGYTSSDGLCKFWDFR------SSDKFMSIEIPNQITCMNWSKSNHRMVYTADNNNLV 203
Query: 253 KVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLS 312
+D+ + LS + GH+LAVR + S ++L + SYDMT R++
Sbjct: 204 YCYDIANLKTPLS---------VLSGHQLAVRSIKSSNSAHDLLATASYDMTSRIF---- 250
Query: 313 DDGHGLTGKTNSIDP-AHGCRFIFMEHSEFVFGADWSLWGTPGFVASTGWDGQVCIWN 369
DP H C HSEFV DWS +G ++AS GWD + IWN
Sbjct: 251 -------------DPEQHSCIRKVDLHSEFVRDVDWSDFGDGSWIASVGWDESLYIWN 295
>7295052 [U] KOG0277 Peroxisomal targeting signal type 2 receptor
Length = 339
Score = 133 bits (335), Expect = 4e-31
Identities = 105/370 (28%), Positives = 159/370 (42%), Gaps = 78/370 (21%)
Query: 11 GYGVAYSPFYDNKLAVASGSNFGLVGNGKLIILDIMPN-------GQ-LVESNSFLTQDG 62
GY + +SPF N L +A+ +GL G G L +L+ N GQ L E DG
Sbjct: 13 GYSLRFSPFEANYLLLATSQLYGLAGGGSLFLLEQNSNTNSSSTDGQSLGELCRLEWSDG 72
Query: 63 LFDLAWNESHENQCLVAQGDGSLRLF---------DIKLKDYPIAIYKEHQREVFSCNWN 113
LFD+AW + A GDGSL+++ + P+ +EH+ EV+S +W
Sbjct: 73 LFDVAWCPYAADIAATASGDGSLQIWCGLDGESASNQLTPKQPLICLQEHKNEVYSLDWG 132
Query: 114 -MIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKE 172
+S SWD +KLW R S+ T
Sbjct: 133 EKWNYHTLLSGSWDCTLKLWDCNRQNSITTFV---------------------------- 164
Query: 173 HQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALT 232
G+ + IY A FSP NL S + ++L++ + G P H EAL
Sbjct: 165 -----GHNDLIYGAKFSPLIANLFASVSTDGHLNLWN-SLDFAGKPLMSIEAHAS-EALC 217
Query: 233 CDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHH 292
CD++ + +++ TGG D +I+ WDLR R ++ E+ E AVR++ SPH
Sbjct: 218 CDWSHFDRNVLVTGGSDGLIRGWDLRKMR---------THVFELYSGEFAVRRLACSPHS 268
Query: 293 SNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGT 352
+ +L S +YD T R+W +++ + + H+EFV G DW+ T
Sbjct: 269 AAVLASANYDFTTRIW---------------NLERGESAQEVNARHTEFVCGLDWNPHRT 313
Query: 353 PGFVASTGWD 362
+A GWD
Sbjct: 314 HQ-LADCGWD 322
>SPAC29A4.18 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 431
Score = 70.9 bits (172), Expect = 3e-12
Identities = 62/247 (25%), Positives = 99/247 (39%), Gaps = 39/247 (15%)
Query: 102 EHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVA 161
+H + S WN + K VS S D + W L + N++++AS L
Sbjct: 182 KHTQPCTSVCWNFLSKGTLVSGSQDATLSCWDLN--------AYNESDSASVLK------ 227
Query: 162 PVRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGL-PQH 220
H +++ + F +L+ S + ++ ++D+R P+ P
Sbjct: 228 ------------VHISSHEKQVSDVRFHYKHQDLLASVSYDQYLHVHDIRRPDASTKPAR 275
Query: 221 QFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHE 280
H G + FN + I+AT DK I +WDLR + L + ++GHE
Sbjct: 276 SVHAHSG-PIHSVAFNPHNDFILATCSTDKTIALWDLRNLNQRL---------HTLEGHE 325
Query: 281 LAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSE 340
V K+++SPH +L STS D VW DLS G + P F+ H+
Sbjct: 326 DIVTKISFSPHEEPILASTSADRRTLVW-DLSRIGEDQPAEEAQDGPPE-LLFMHGGHTS 383
Query: 341 FVFGADW 347
DW
Sbjct: 384 CTIDMDW 390
>Hs5032027 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 425
Score = 66.2 bits (160), Expect = 7e-11
Identities = 60/266 (22%), Positives = 104/266 (38%), Gaps = 39/266 (14%)
Query: 103 HQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAP 162
HQ+E + +WN +S+S D + LW + S + +A + + +AV
Sbjct: 176 HQKEGYGLSWNPNLSGHLLSASDDHTICLWDI----SAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 163 VRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQF 222
D + ++++ F + + + ++D R N P H
Sbjct: 232 --------------DVSWHLLHESLFGS--------VADDQKLMIWDTRSNNTSKPSHSV 269
Query: 223 LGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELA 282
H E FN Y I+ATG DK + +WDLR + + ++ + H+
Sbjct: 270 DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------LKLHSFESHKDE 319
Query: 283 VRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFV 342
+ +V WSPH+ +L S+ D VW DLS G + + P FI H+ +
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVW-DLSKIGEEQSPEDAEDGPPE-LLFIHGGHTAKI 377
Query: 343 FGADWSLWGTPGFVASTGWDGQVCIW 368
W+ P + S D + +W
Sbjct: 378 SDFSWNP-NEPWVICSVSEDNIMQVW 402
Score = 55.8 bits (133), Expect = 1e-07
Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 32/225 (14%)
Query: 64 FDLAWNESHENQCLVAQGDGSLRLFDIKL--KDYPIA----IYKEHQREVFSCNWNMIQK 117
+ L+WN + L A D ++ L+DI K+ + I+ H V +W+++ +
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 118 QMFVSSSWDGKVKLW-----SLMRPQSLMTMSPNDTNAAS-------TLSRTSAVAPVRV 165
+F S + D K+ +W + +P + + N S L+ SA V +
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 166 -PMSNQKEHQHA-DGNKECIYQATFSPHDPNLVLCSSGNSFISLYDL---------RVPN 214
+ N K H+ + +K+ I+Q +SPH+ ++ S + ++++DL
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 215 NGLPQHQFLGHGGFEALTCDF--NKYRPHIIATGGVDKMIKVWDL 257
+G P+ F+ HGG A DF N P +I + D +++VW +
Sbjct: 361 DGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>7299974 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 430
Score = 66.2 bits (160), Expect = 7e-11
Identities = 63/272 (23%), Positives = 101/272 (36%), Gaps = 51/272 (18%)
Query: 103 HQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAP 162
HQ+E + +WN +S+S D + LW D NA
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLW--------------DINATP---------- 215
Query: 163 VRVPMSNQKEHQHAD------GNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNG 216
KEH+ D G+ + + +L + + + ++D R N
Sbjct: 216 --------KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267
Query: 217 LPQHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEI 276
P H H E FN Y I+ATG DK + +WDLR + + ++
Sbjct: 268 KPSHTVDAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------LKLHSF 317
Query: 277 QGHELAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFM 336
+ H+ + +V WSPH+ +L S+ D VW DLS G + + P FI
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVW-DLSKIGEEQSTEDAEDGPPE-LLFIHG 375
Query: 337 EHSEFVFGADWSLWGTPGFVASTGWDGQVCIW 368
H+ + W+ P + S D + +W
Sbjct: 376 GHTAKISDFSWNP-NEPWIICSVSEDNIMQVW 406
Score = 55.5 bits (132), Expect = 1e-07
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 64 FDLAWNESHENQCLVAQGDGSLRLFDIKL--KDYPIA----IYKEHQREVFSCNWNMIQK 117
+ L+WN + L A D ++ L+DI K++ + I+ H V W+++ +
Sbjct: 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE 244
Query: 118 QMFVSSSWDGKVKLW-----SLMRPQSLMTMSPNDTNAAS-------TLSRTSAVAPVRV 165
+F S + D K+ +W + +P + + N S L+ SA V +
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 166 -PMSNQKEHQHA-DGNKECIYQATFSPHDPNLVLCSSGNSFISLYDL---------RVPN 214
+ N K H+ + +K+ I+Q +SPH+ ++ S + + ++DL
Sbjct: 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 364
Query: 215 NGLPQHQFLGHGGFEALTCDF--NKYRPHIIATGGVDKMIKVWDL 257
+G P+ F+ HGG A DF N P II + D +++VW +
Sbjct: 365 DGPPELLFI-HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>7301821 [S] KOG0269 WD40 repeat-containing protein
Length = 776
Score = 65.9 bits (159), Expect = 9e-11
Identities = 71/297 (23%), Positives = 116/297 (38%), Gaps = 58/297 (19%)
Query: 22 NKLAVASGSN-FGLVGNGKLIILDIMPNGQLVESNSFLTQDGLF----DLAWNESHENQC 76
N LA+ +N L G L + I NG N L D+AW+ N
Sbjct: 22 NALALNKDNNQIALAGRSLLKVYSINSNGFTESCNMRGKNQNLSYSANDVAWSTLDSNLL 81
Query: 77 LVAQGDGSLRLFDIKL--KDYPIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSL 134
A +G + ++D+ + + +Y EH+R + ++ + + +S S DG +K + +
Sbjct: 82 ATAATNGVVSVWDLSKFGRQKQLLVYNEHERTAHTVTFHSSEPNILISGSQDGTIKCFDI 141
Query: 135 MRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNKECIYQATFSPHDPN 194
+S+ T N E + FSPH N
Sbjct: 142 RSDKSINTYFCNS---------------------------------ESVRDVKFSPHTQN 168
Query: 195 LVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKV 254
+ S N + L+D+R + + QF H G TCD++ R + +ATG DK IKV
Sbjct: 169 IFSAVSENGTVQLWDMRKWDKCMV--QFTAHYG-PVYTCDWHPTR-NWLATGSRDKQIKV 224
Query: 255 WDLRMCRKMLSQGHQPININEIQGHELA-VRKVTWSPHHSNMLLSTS--YDMTCRVW 308
W++ G + E H +A V +V W P + + S + D + VW
Sbjct: 225 WNM--------DGRPGL---EHTIHTIAVVGRVKWRPERTYHIASCALVVDYSVHVW 270
>SPCC1672.10 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 430
Score = 64.7 bits (156), Expect = 2e-10
Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 44/277 (15%)
Query: 52 VESNSFLTQDGLFDLAWNESHENQCLVAQGDG-SLRLFDIKLKD-------YPIAIYKEH 103
+E + + DG + A + + + G+G + +FD D P A+ K H
Sbjct: 122 IEISQKIPHDGDVNRARYMPQKPEIIATMGEGGNAYIFDTTCHDALTTGEALPQAVLKGH 181
Query: 104 QREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPV 163
E F WN + + D + LW + + T S T ++P+
Sbjct: 182 TAEGFGLCWNPNLPGNLATGAEDQVICLWDVQ-------------TQSFTSSETKVISPI 228
Query: 164 RVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRV-PNNGLPQHQF 222
K H+H D + F P L+ S + + ++D R+ P P+
Sbjct: 229 A------KYHRHTD----IVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQ 278
Query: 223 LGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELA 282
A+ N + +++AT DK + +WDLR + L + ++GHE
Sbjct: 279 AHSKAINAVA--INPFNDYLLATASADKTVALWDLRNPYQRL---------HTLEGHEDE 327
Query: 283 VRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLT 319
V + WSPH +L S+S D +W DL G T
Sbjct: 328 VYGLEWSPHDEPILASSSTDRRVCIW-DLEKIGEEQT 363
>CE11860 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 412
Score = 63.5 bits (153), Expect = 5e-10
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 45/251 (17%)
Query: 101 KEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAV 160
K H+ E + +W+ ++ +++ DG + W D NA T+S
Sbjct: 168 KGHEGEGYGMSWSNTREGHLLTAGDDGMICHW--------------DINANQTISGQI-- 211
Query: 161 APVRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSF-ISLYDLRVPNNGLPQ 219
VP S K H + ++ + A N V S G+ ++L+DLR PQ
Sbjct: 212 ----VPQSKFKGH--SSNAEDVSFHALH-----NFVFGSVGDDRKLNLWDLR---QSKPQ 257
Query: 220 HQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGH 279
+GH E FN + +I+ATG VDK + +WD+R RK + ++ H
Sbjct: 258 LTAVGHTA-EVNCITFNPFSEYILATGSVDKTVALWDMRNMRK---------KMYTLKHH 307
Query: 280 ELAVRKVTWSPHHSNMLLSTSYDMTCRVW--TDLSDDGHGLTGKTNSIDPAHGCRFIFME 337
+ +V++SPH+ +L S+ D VW + + D ++S+ P FI
Sbjct: 308 NDEIFQVSFSPHYETVLASSGSDDRVIVWDISKIQDPSSSSAASSDSVPPE--VIFIHAG 365
Query: 338 HSEFVFGADWS 348
H+ V W+
Sbjct: 366 HTGKVADFSWN 376
Score = 49.3 bits (116), Expect = 9e-06
Identities = 48/224 (21%), Positives = 88/224 (38%), Gaps = 31/224 (13%)
Query: 64 FDLAWNESHENQCLVAQGDGSLRLFDIKLKD------YPIAIYKEHQREVFSCNWNMIQK 117
+ ++W+ + E L A DG + +DI P + +K H +++ +
Sbjct: 175 YGMSWSNTREGHLLTAGDDGMICHWDINANQTISGQIVPQSKFKGHSSNAEDVSFHALHN 234
Query: 118 QMFVSSSWDGKVKLWSL--MRPQ----------SLMTMSPNDTNAASTLSRTSAVAPVRV 165
+F S D K+ LW L +PQ + +T +P +T S VA +
Sbjct: 235 FVFGSVGDDRKLNLWDLRQSKPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDM 294
Query: 166 PMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDL----------RVPNN 215
+K + N E I+Q +FSPH ++ S + + ++D+ ++
Sbjct: 295 RNMRKKMYTLKHHNDE-IFQVSFSPHYETVLASSGSDDRVIVWDISKIQDPSSSSAASSD 353
Query: 216 GLPQHQFLGHGGFEALTCDF--NKYRPHIIATGGVDKMIKVWDL 257
+P H G DF N RP I + ++VW++
Sbjct: 354 SVPPEVIFIHAGHTGKVADFSWNPNRPWTICSSDEFNALQVWEV 397
>Hs14149987 [S] KOG0269 WD40 repeat-containing protein
Length = 790
Score = 62.8 bits (151), Expect = 8e-10
Identities = 70/306 (22%), Positives = 109/306 (34%), Gaps = 64/306 (20%)
Query: 65 DLAWNESHENQCLVAQGDGSLRLFDI--KLKDYPIAIYKEHQREVFSCNWNMIQKQMFVS 122
D+ W++ EN A +G + +++ ++ ++ EH+R V ++ + + +S
Sbjct: 79 DVVWHQMDENLLATAATNGVVVTWNLGRPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLS 138
Query: 123 SSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNKEC 182
S DG +K + L R S+ T S G E
Sbjct: 139 GSQDGFMKCFDLRRKDSVSTFS---------------------------------GQSES 165
Query: 183 IYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRPHI 242
+ FS D + N + L+D+R P+ + F H G CD++
Sbjct: 166 VRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRC--ERMFTAHNG-PVFCCDWHPEDRGW 222
Query: 243 IATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSP--HHSNMLLSTS 300
+ATGG DKM+KVWD+ R Q I +V +V W P H S
Sbjct: 223 LATGGRDKMVKVWDMTTHRAKEMHCVQTI---------ASVARVKWRPECRHHLATCSMM 273
Query: 301 YDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGTPGFVASTG 360
D VW PA +F EH + G W P F+ S
Sbjct: 274 VDHNIYVW-----------DVRRPFVPA----AMFEEHRDVTTGIAWRHPHDPSFLLSGS 318
Query: 361 WDGQVC 366
D +C
Sbjct: 319 KDSSLC 324
>CE16234 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 417
Score = 62.8 bits (151), Expect = 8e-10
Identities = 66/274 (24%), Positives = 102/274 (37%), Gaps = 44/274 (16%)
Query: 96 PIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLS 155
P+ K H +E + +WN ++ + +S+S D V W + Q N A L
Sbjct: 164 PLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQ----------NVAGELQ 213
Query: 156 RTSAVAPVRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSF-ISLYDLRVPN 214
+ + H DG V S G+ + ++D+R
Sbjct: 214 AKDVFKGHESVVEDVAWHVLHDG-----------------VFGSVGDDKKLLIWDVRTST 256
Query: 215 NGLPQHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININ 274
P H H E FN Y I+ATG DK + +WDLR R + ++
Sbjct: 257 ---PGHCIDAHSA-EVNCLAFNPYSEFILATGSADKTVALWDLRNLR---------MKLH 303
Query: 275 EIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFI 334
+ H + +V WSPH+ +L S+ D VW DLS G + + P FI
Sbjct: 304 SFESHRDEIFQVQWSPHNETILASSGTDKRLHVW-DLSKIGEDQSAEDAEDGPPE-LLFI 361
Query: 335 FMEHSEFVFGADWSLWGTPGFVASTGWDGQVCIW 368
H+ + W+ P V S D + +W
Sbjct: 362 HGGHTAKISDFSWNP-NEPWVVCSVSEDNILQVW 394
Score = 55.5 bits (132), Expect = 1e-07
Identities = 56/260 (21%), Positives = 100/260 (37%), Gaps = 47/260 (18%)
Query: 59 TQDGLFDLAWNESHENQCLVAQGDGSLRLFDIKLKDYPIA------IYKEHQREVFSCNW 112
T++G + L+WN + E L A D ++ +DI ++K H+ V W
Sbjct: 172 TKEG-YGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKGHESVVEDVAW 230
Query: 113 NMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKE 172
+++ +F S D K+ +W + RTS
Sbjct: 231 HVLHDGVFGSVGDDKKLLIWDV---------------------RTSTPG----------- 258
Query: 173 HQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALT 232
D + + F+P+ ++ S + ++L+DLR N + H F H E
Sbjct: 259 -HCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLR--NLRMKLHSFESHRD-EIFQ 314
Query: 233 CDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEI----QGHELAVRKVTW 288
++ + I+A+ G DK + VWDL + S E+ GH + +W
Sbjct: 315 VQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSW 374
Query: 289 SPHHSNMLLSTSYDMTCRVW 308
+P+ ++ S S D +VW
Sbjct: 375 NPNEPWVVCSVSEDNILQVW 394
>Hs4506439 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 425
Score = 62.0 bits (149), Expect = 1e-09
Identities = 59/266 (22%), Positives = 99/266 (37%), Gaps = 39/266 (14%)
Query: 103 HQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAP 162
HQ+E + +WN +S+S D V LW + P + + + +
Sbjct: 175 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI-------NAGPKEGKIVDAKAIFTGHSA 227
Query: 163 VRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQF 222
V ++ H+ G+ + + + ++D R P H
Sbjct: 228 VVEDVAWHLLHESLFGSV-------------------ADDQKLMIWDTRSNTTSKPSHLV 268
Query: 223 LGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELA 282
H E FN Y I+ATG DK + +WDLR + + ++ + H+
Sbjct: 269 DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------LKLHTFESHKDE 318
Query: 283 VRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFV 342
+ +V WSPH+ +L S+ D VW DLS G + + P FI H+ +
Sbjct: 319 IFQVHWSPHNETILASSGTDRRLNVW-DLSKIGEEQSAEDAEDGPPE-LLFIHGGHTAKI 376
Query: 343 FGADWSLWGTPGFVASTGWDGQVCIW 368
W+ P + S D + IW
Sbjct: 377 SDFSWNP-NEPWVICSVSEDNIMQIW 401
Score = 61.6 bits (148), Expect = 2e-09
Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 43/255 (16%)
Query: 64 FDLAWNESHENQCLVAQGDGSLRLFDIKL--KDYPI----AIYKEHQREVFSCNWNMIQK 117
+ L+WN + L A D ++ L+DI K+ I AI+ H V W+++ +
Sbjct: 180 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 239
Query: 118 QMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHAD 177
+F S + D K+ +W DT + +T K D
Sbjct: 240 SLFGSVADDQKLMIW--------------DTRSNTT----------------SKPSHLVD 269
Query: 178 GNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNK 237
+ + +F+P+ ++ S + ++L+DLR N L H F H E ++
Sbjct: 270 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR--NLKLKLHTFESHKD-EIFQVHWSP 326
Query: 238 YRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEI----QGHELAVRKVTWSPHHS 293
+ I+A+ G D+ + VWDL + S E+ GH + +W+P+
Sbjct: 327 HNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 386
Query: 294 NMLLSTSYDMTCRVW 308
++ S S D ++W
Sbjct: 387 WVICSVSEDNIMQIW 401
>At2g16780 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 415
Score = 60.8 bits (146), Expect = 3e-09
Identities = 63/263 (23%), Positives = 110/263 (40%), Gaps = 56/263 (21%)
Query: 11 GYGVAYSPFYDNKLAVASGSNFGLVGNGKLIILDIMPNGQLVESNSFLTQDG----LFDL 66
GYG+++SPF + L SGS + K+ + D+ Q N+ +G + D+
Sbjct: 171 GYGLSWSPFKEGYLL--SGSQ-----DQKICLWDVSATPQDKVLNAMFVYEGHESAIADV 223
Query: 67 AWNESHENQCLVAQGDGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMFVSSSWD 126
+W+ +EN A DG L ++D + + K H+REV ++N + + ++S D
Sbjct: 224 SWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQV-KVHEREVNYLSFNPFNEWVLATASSD 282
Query: 127 GKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNKECIYQA 186
V L+ L + AP+ V S++ E ++Q
Sbjct: 283 STVALFDLRKLN----------------------APLHVMSSHEGE----------VFQV 310
Query: 187 TFSPHDPNLVLCSSGNSFISLYDL-RVPNNGL---------PQHQFLGHGGFEALTCDF- 235
+ P+ ++ S + + ++DL RV L P HGG +A DF
Sbjct: 311 EWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFA 370
Query: 236 -NKYRPHIIATGGVDKMIKVWDL 257
NK P +IA+ D ++VW +
Sbjct: 371 WNKNEPWVIASVAEDNSLQVWQM 393
Score = 57.4 bits (137), Expect = 3e-08
Identities = 55/236 (23%), Positives = 102/236 (42%), Gaps = 41/236 (17%)
Query: 103 HQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPND--TNAASTL-SRTSA 159
H +E + +W+ ++ +S S D K+ LW ++ +P D NA SA
Sbjct: 167 HDKEGYGLSWSPFKEGYLLSGSQDQKICLWD-------VSATPQDKVLNAMFVYEGHESA 219
Query: 160 VAPVRVPM---------------------SNQKEHQHADGNKECIYQATFSPHDPNLVLC 198
+A V M +NQ +HQ +E Y +F+P + ++
Sbjct: 220 IADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNY-LSFNPFNEWVLAT 278
Query: 199 SSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDL- 257
+S +S ++L+DLR N P H H G E +++ ++A+ G D+ + VWDL
Sbjct: 279 ASSDSTVALFDLRKLN--APLHVMSSHEG-EVFQVEWDPNHETVLASSGEDRRLMVWDLN 335
Query: 258 RMCRKML-----SQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVW 308
R+ + L ++ P + GH+ + W+ + ++ S + D + +VW
Sbjct: 336 RVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVW 391
>Hs22048320 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 345
Score = 59.3 bits (142), Expect = 9e-09
Identities = 52/210 (24%), Positives = 85/210 (39%), Gaps = 38/210 (18%)
Query: 103 HQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAP 162
HQ+E + +WN +S+S D V LW + + P + + T A
Sbjct: 91 HQKEGYGLSWNPNLSGHLLSASDDHTVCLWDI-------SAIPKEGKVDARTIFTGHTAV 143
Query: 163 VRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQF 222
V N ++++ F LV + + + ++D R N P H
Sbjct: 144 VEDVFWN------------LLHESLF-----RLV---ADDQKLMIWDTRSKNTSKPSHSV 183
Query: 223 LGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELA 282
+ E FN Y I+ATG DK + +WDLR + + ++ + H+
Sbjct: 184 DAYTA-EVNCLSFNPYGEFILATGSADKTVALWDLRNLK---------LKVHSFESHKDE 233
Query: 283 VRKVTWSPHHSNMLLSTSYDMTCRVWTDLS 312
+ +V WSPH+ +L S+ D VW DLS
Sbjct: 234 IFQVQWSPHNETILASSGTDHGLNVW-DLS 262
Score = 51.6 bits (122), Expect = 2e-06
Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 31/245 (12%)
Query: 64 FDLAWNESHENQCLVAQGDGSLRLFDIKL-----KDYPIAIYKEHQREVFSCNWNMIQKQ 118
+ L+WN + L A D ++ L+DI K I+ H V WN++ +
Sbjct: 96 YGLSWNPNLSGHLLSASDDHTVCLWDISAIPKEGKVDARTIFTGHTAVVEDVFWNLLHES 155
Query: 119 MFVSSSWDGKVKLW-----SLMRPQSLMTMSPNDTNAAS-------TLSRTSAVAPVRV- 165
+F + D K+ +W + +P + + N S L+ SA V +
Sbjct: 156 LFRLVADDQKLMIWDTRSKNTSKPSHSVDAYTAEVNCLSFNPYGEFILATGSADKTVALW 215
Query: 166 PMSNQKEHQHA-DGNKECIYQATFSPHDPNLVLCSSGNSFISLYDL-RVPNNGLPQH--- 220
+ N K H+ + +K+ I+Q +SPH+ ++ S + ++++DL ++ P+
Sbjct: 216 DLRNLKLKVHSFESHKDEIFQVQWSPHNETILASSGTDHGLNVWDLSKITEEQSPEDAED 275
Query: 221 ---QFLGHGGFEALTCDF--NKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININE 275
+ HGG A DF N P +I + + +++VW + + +S G P +
Sbjct: 276 RPPELFIHGGHTAKIPDFSLNPSEPWMICSVSENNIMEVWQM---AENISNGEDPEGSVD 332
Query: 276 IQGHE 280
+G E
Sbjct: 333 PEGQE 337
>At4g35050 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 424
Score = 58.5 bits (140), Expect = 2e-08
Identities = 54/260 (20%), Positives = 108/260 (40%), Gaps = 48/260 (18%)
Query: 60 QDGLFDLAWNESHENQCLVAQGDGSLRLFDIKLKDY-----PIAIYKEHQREVFSCNWNM 114
Q+G + LAW+ E L D + L+D+ P+ +Y+ HQ + W+M
Sbjct: 170 QEG-YGLAWSSFKEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHM 228
Query: 115 IQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQ 174
+ +F S+ D ++ +W L +NQ +HQ
Sbjct: 229 KNENIFGSAGDDCQLVIWDL--------------------------------RTNQMQHQ 256
Query: 175 HADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCD 234
+E Y +F+P + ++ +S +S ++L+DLR P H H G E +
Sbjct: 257 VKVHEREINY-LSFNPFNEWVLATASSDSTVALFDLR--KLTAPLHVLSKHEG-EVFQVE 312
Query: 235 FNKYRPHIIATGGVDKMIKVWDL------RMCRKMLSQGHQPININEIQGHELAVRKVTW 288
++ ++A+ G D+ + VWD+ ++ ++ ++ P + GH+ + W
Sbjct: 313 WDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKAKISDFAW 372
Query: 289 SPHHSNMLLSTSYDMTCRVW 308
+ ++ S + D + +VW
Sbjct: 373 NKDEPWVISSVAEDNSLQVW 392
>At1g20540 [S] KOG1007 WD repeat protein TSSC1 WD repeat superfamily
Length = 379
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 188 FSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRPHIIATGG 247
+ PHD N V ++G S + +DLR + + + H + D+N R HI+ T
Sbjct: 204 WDPHDVNAV-AATGESSVQFWDLRT----MKKVNSIEHAHVRGV--DYNPKREHILVTAE 256
Query: 248 VDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRV 307
+ I VWDLR + + + E+ GH V +P + ++LS D +
Sbjct: 257 DESGIHVWDLRKAK---------VPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNL 307
Query: 308 W---TDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGTPGFVASTGWDGQ 364
W SDD + ++ + + ++ + V+G WS P AS +DG+
Sbjct: 308 WYASATSSDDKTSESPVESTRQRVNPLLNSYTDYEDSVYGLAWSS-REPWVFASLSYDGR 366
Query: 365 VCI 367
V I
Sbjct: 367 VII 369
>7296187 [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 481
Score = 57.4 bits (137), Expect = 3e-08
Identities = 85/317 (26%), Positives = 126/317 (38%), Gaps = 54/317 (17%)
Query: 66 LAWNESHEN----QCLVAQGDGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMFV 121
LAW H + + A GDG R++D+KL + I H V + W +
Sbjct: 203 LAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNI-AGHTNAVTAVRWG--GAGLIY 259
Query: 122 SSSWDGKVKLWSLMRPQSLMTMSPN----DTNAAST--LSRTSAVAPVRVPMSNQKEHQH 175
+SS D VK+W T S + + A ST + RT PV+ +
Sbjct: 260 TSSKDRTVKMWRAADGILCRTFSGHAHWVNNIALSTDYVLRTGPFHPVKDRSKSHLSLST 319
Query: 176 ADGNKECI--YQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTC 233
+ + + YQA +LV CS N +LY R N + + GH
Sbjct: 320 EELQESALKRYQAVCPDEVESLVSCSDDN---TLYLWRNNQNKCVE-RMTGHQN----VV 371
Query: 234 DFNKYRPHI--IATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPH 291
+ KY P + IA+ DK +++W S G + +GH AV V WS
Sbjct: 372 NDVKYSPDVKLIASASFDKSVRLW-------RASDGQY---MATFRGHVQAVYTVAWSA- 420
Query: 292 HSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWG 351
S +++S S D T +VW+ T K P H++ VFG DW+ G
Sbjct: 421 DSRLIVSGSKDSTLKVWS-------VQTKKLAQELPG---------HADEVFGVDWAPDG 464
Query: 352 TPGFVASTGWDGQVCIW 368
+ VAS G D + +W
Sbjct: 465 SR--VASGGKDKVIKLW 479
>Hs4758558 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 522
Score = 56.6 bits (135), Expect = 6e-08
Identities = 56/197 (28%), Positives = 83/197 (41%), Gaps = 25/197 (12%)
Query: 122 SSSWDGKVKLWSLMRPQSLMTMSPNDTNAAST--------LSRTSAVAPVRV-PMSNQKE 172
S + DG VKLWSL + + + + A L T R+ + Q+E
Sbjct: 298 SCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEE 357
Query: 173 HQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALT 232
H +G+ +Y F D +L ++F ++DLR + FL E
Sbjct: 358 ILHQEGHSMGVYDIAFH-QDGSLAGTGGLDAFGRVWDLRTGRCIM----FLEGHLKEIYG 412
Query: 233 CDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHH 292
+F+ HI ATG D KVWDLR R + + I H+ V V + P H
Sbjct: 413 INFSPNGYHI-ATGSGDNTCKVWDLRQRRCVYT----------IPAHQNLVTGVKFEPIH 461
Query: 293 SNMLLSTSYDMTCRVWT 309
N LL+ +YD T ++WT
Sbjct: 462 GNFLLTGAYDNTAKIWT 478
>ECU07g0750 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 384
Score = 55.1 bits (131), Expect = 2e-07
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 15/190 (7%)
Query: 179 NKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKY 238
++ + FS D L+ + + L+D R + H + L+ F+
Sbjct: 204 HETAVNDCAFSFFDKKLLSSAGDGGMVVLWDTRSEDC---IHAIEEAHTSDILSVRFSPL 260
Query: 239 RPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLS 298
++IAT D +KVWD R+ LSQ P++I + GH V V WSPH+ +L S
Sbjct: 261 DGNVIATSSCDGSVKVWD----RRSLSQ---PLHI--LLGHSKDVVSVEWSPHNDKVLAS 311
Query: 299 TSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGTPGFVAS 358
S D VW DL G + + + P +F+ H+ V W+ P +AS
Sbjct: 312 GSTDRRVIVW-DLGQAGAEVPEEYKAEGPPE-MKFLHGGHTSTVCDISWNP-AEPFEIAS 368
Query: 359 TGWDGQVCIW 368
D + IW
Sbjct: 369 VSEDNILQIW 378
>SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein
Length = 614
Score = 54.7 bits (130), Expect = 2e-07
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 167 MSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHG 226
+S QK G+++ IY FS H+ ++ SG+ L+D+ L
Sbjct: 389 LSTQKVRYVFSGHEQDIYSLDFS-HNGRFIVSGSGDRTARLWDVETGQCILKLEI---EN 444
Query: 227 GFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKV 286
G A+ N IA G +D++I+VW + + ++GH+ +V +
Sbjct: 445 GVTAIAISPND---QFIAVGSLDQIIRVWSV-----------SGTLVERLEGHKESVYSI 490
Query: 287 TWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFG-- 344
+SP S++LLS S D T +VW + GL ++I P C+ + H++FV
Sbjct: 491 AFSP-DSSILLSGSLDKTIKVWELQATRSVGL----SAIKPEGICKATYTGHTDFVLSVA 545
Query: 345 -ADWSLWGTPG 354
+ S WG G
Sbjct: 546 VSPDSRWGLSG 556
>7290895 [R] KOG0286 G-protein beta subunit
Length = 358
Score = 54.7 bits (130), Expect = 2e-07
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 49/281 (17%)
Query: 96 PIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLM--RPQSLMTMSPNDTNAAST 153
P + K HQ +V +W+ K+ +SSS DG++ +W + +TM A +
Sbjct: 62 PRKVLKGHQAKVLCTDWSP-DKRHIISSSQDGRLIIWDAFTTNKEHAVTMPTTWIMACAY 120
Query: 154 LSRTSAVA------PVRV-PMSNQKEHQ--------HADGNKECIYQATFSPHDPNLVLC 198
+ VA V V P+++ +E H CIY P+ +L
Sbjct: 121 APSGNFVACGGLDNKVTVYPITSDEEMAAKKRTVGTHTSYMSCCIY-----PNSDQQILT 175
Query: 199 SSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRP-HIIATGGVDKMIKVWDL 257
SG+S +L+D+ +G F GH G + + D + +G D+M +WD+
Sbjct: 176 GSGDSTCALWDVE---SGQLLQSFHGHSG-DVMAIDLAPNETGNTFVSGSCDRMAFIWDM 231
Query: 258 RMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHG 317
R GH + +GH+ V V + P + + + S D +CR++ +D
Sbjct: 232 R-------SGHV---VQSFEGHQSDVNSVKFHP-CGDAIATGSDDSSCRLYDMRADREVA 280
Query: 318 LTGK------TNSIDPAHGCRFIFMEHSEFVFGADWSLWGT 352
+ K NS+D + R +F ++++ +LW T
Sbjct: 281 VFAKESIIFGVNSVDFSVSGRLLFAGYNDYTV----NLWDT 317
>At1g76260 [S] KOG1007 WD repeat protein TSSC1 WD repeat superfamily
Length = 350
Score = 53.1 bits (126), Expect = 6e-07
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 33/199 (16%)
Query: 178 GNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRV--PNNGLPQHQFLGHGGFEALTCDF 235
G + + ++PHD N V +S +S I +DLR NN + + D+
Sbjct: 166 GMRHSLSGGAWNPHDVNSVAATSESS-IQFWDLRTMKKNNSIERAH--------VRNVDY 216
Query: 236 NKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNM 295
N R HI+ + + I +WDLR + + E+ GH V +P + +
Sbjct: 217 NLKREHILVSADDESGIHLWDLRKTK---------FPVQELPGHTHWTWAVRCNPEYEEL 267
Query: 296 LLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCR-------FIFMEHSEFVFGADWS 348
+LS D +W + H S P R + ++ + V+G WS
Sbjct: 268 ILSVGTDSAVNLWFASASSEH-----KTSESPVEASRQRVNPLLNSYTDYEDSVYGLAWS 322
Query: 349 LWGTPGFVASTGWDGQVCI 367
P AS +DG+V I
Sbjct: 323 S-REPWIFASLSYDGRVVI 340
>CE17845 [R] KOG0286 G-protein beta subunit
Length = 356
Score = 52.8 bits (125), Expect = 8e-07
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 37/252 (14%)
Query: 99 IYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLW---------SLMRPQSLM---TMSPN 146
I K H +V +W++ K+ VSSS DGKV +W +L P + + SP+
Sbjct: 63 ILKGHVGKVLCMDWSL-DKRHIVSSSQDGKVIVWDGFTTNKEHALTMPTTWVMACAFSPS 121
Query: 147 DTN-AASTLSRTSAVAPVRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFI 205
A L +V P+ ++ + + + TF D NL+L SG+S
Sbjct: 122 SQMIACGGLDNKCSVVPLSFEDDIIQKKRQVATHTSYMSCCTFLRSD-NLILTGSGDSTC 180
Query: 206 SLYDLRVPNNGLPQHQFLGHGG----FEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCR 261
+++D+ +G F GH G + CD + + G DK VWD+R +
Sbjct: 181 AIWDV---ESGQLIQNFHGHTGDVFAIDVPKCDTG----NTFISAGADKHSLVWDIRSGQ 233
Query: 262 KMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGK 321
+ +GHE + V + P + + + S D TCR++ +D + K
Sbjct: 234 ----------CVQSFEGHEADINTVRFHP-NGDAFATGSDDATCRLFDLRADRQVCVYEK 282
Query: 322 TNSIDPAHGCRF 333
+ + P +G F
Sbjct: 283 ESILFPVNGVDF 294
>At4g29730 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 496
Score = 52.4 bits (124), Expect = 1e-06
Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 19/254 (7%)
Query: 121 VSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTSAVAPVRVPMSNQKEHQHADGNK 180
+S D V LW++ Q +TM+ +D+ + + + + + + +G+K
Sbjct: 225 LSGGKDKSVILWNI---QDHITMAGSDSKSPGSSFKQTGEGSDKTGGPSVGPRGIYNGHK 281
Query: 181 ECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRP 240
+ + F P +S + L+D R + + + + D+N +
Sbjct: 282 DTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCV--DWNPHDN 339
Query: 241 HIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTS 300
++I TG D ++V+D R+ L+ + + +GH AV V WSP S++ S++
Sbjct: 340 NLILTGSADNTVRVFD----RRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSA 395
Query: 301 YDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGTPGFVA--- 357
D +W D G T + D G F H + V WSL V+
Sbjct: 396 EDGLLNIW-DCDRVGKKSERATKTPD---GLFFQHAGHRDKVVDFHWSLLNPWTIVSVSD 451
Query: 358 ---STGWDGQVCIW 368
S G G + IW
Sbjct: 452 NCESIGGGGTLQIW 465
>At2g19520 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 507
Score = 51.6 bits (122), Expect = 2e-06
Identities = 55/258 (21%), Positives = 107/258 (41%), Gaps = 27/258 (10%)
Query: 121 VSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRTS-AVAPVRVPMSNQKEHQHADGN 179
+S D V LWS+ + T+ + ++ S + +T P + H G+
Sbjct: 236 LSGGKDKSVVLWSIQ--DHITTIGTDSKSSGSIIKQTGEGTDKNESPTVGPRGVYH--GH 291
Query: 180 KECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYR 239
++ + FSP +S + L+D R N + + + + D+N +
Sbjct: 292 EDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCV--DWNPHD 349
Query: 240 PHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLST 299
++I TG D ++++D R+ L+ I + +GH+ AV V WSP S++ S+
Sbjct: 350 DNLILTGSADNTVRLFD----RRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSS 405
Query: 300 SYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHS-------EFVFGAD--WSLW 350
+ D +W D ++ K++ A +F +H+ +F + A W++
Sbjct: 406 AEDGLLNIW-----DYDRVSKKSDR--AAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIV 458
Query: 351 GTPGFVASTGWDGQVCIW 368
+TG G + IW
Sbjct: 459 SVSDDCETTGGGGTLQIW 476
>YLR429w [Z] KOG0303 Actin-binding protein Coronin contains WD40 repeats
Length = 651
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 222 FLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKM---LSQGHQPININEIQ- 277
F GH + L DF+ + H IA+G D I +WD+ K + + +PI+I ++
Sbjct: 77 FRGHTA-QVLDTDFDPFNDHRIASGSDDSKIGIWDIPENYKFHDHVDEDGEPIDIKPVKF 135
Query: 278 --GHELAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIF 335
GH V V + P N+L S+S D T ++W + TGK I
Sbjct: 136 LTGHARKVGHVLYHPVAENVLASSSGDYTVKLW-------NVETGKD----------MIT 178
Query: 336 MEHSEFVFGADWSLWGTPGFVASTGWDGQVCIWN 369
++H + V +S G ++A+ D ++ +WN
Sbjct: 179 LKHPDMVTSMSFSYDG--NYLATVARDKKLRVWN 210
>YDR030c [R] KOG4155 FOG: WD40 repeat
Length = 506
Score = 51.2 bits (121), Expect = 2e-06
Identities = 48/175 (27%), Positives = 72/175 (40%), Gaps = 43/175 (24%)
Query: 98 AIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLMTMSPNDTNAASTLSRT 157
A H+ + + W MF + S D VK+W DTN R
Sbjct: 189 ASISHHKYGITTLKWYKADNGMFFTGSNDKTVKIW--------------DTN------RF 228
Query: 158 SAVAPVRVPMS-NQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNG 216
AV + + NQ ++ D D +L++ +S + + L DLR N+G
Sbjct: 229 EAVQDINLGYKINQIDNNVVD--------------DSSLLVVASEDYYPRLIDLRTMNSG 274
Query: 217 LPQHQFLGHGG-----FEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQ 266
+ LG G E L C FN R IIA G ++ +K+WDLRM ++ S+
Sbjct: 275 VTA---LGMGNQTRMQSEILCCKFNPVREQIIACGDMEGGVKLWDLRMRNRLYSE 326
>YCR084c [R] KOG0266 WD40 repeat-containing protein
Length = 713
Score = 51.2 bits (121), Expect = 2e-06
Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 41/255 (16%)
Query: 82 DGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLM 141
D +R++DI+ + + I + H+++++S ++ VS S D V++W L Q +
Sbjct: 464 DRLIRIWDIENRKI-VMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWDLRTGQCSL 521
Query: 142 TM-----------SPNDTN--AASTLSRTSAVAPVRVPMSNQK---EHQHADGNKECIYQ 185
T+ SP D AA +L R V ++ E++ G+K+ +Y
Sbjct: 522 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 581
Query: 186 ATFSPHDPNLVLCSSGNSFISLYDL---------RVPNNGLPQHQFLGHGGF--EALTCD 234
F+ D V+ S + + L++L + PN+G + ++GH F T
Sbjct: 582 VVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 640
Query: 235 FNKYRPHIIATGGVDKMIKVWDLRMCRKMLS-QGHQPININEIQGHELAVRKVTWSPHHS 293
++Y I +G D+ + WD + +L QGH+ I+ +AV +
Sbjct: 641 NDEY----ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS------VAVANGSPLGPEY 690
Query: 294 NMLLSTSYDMTCRVW 308
N+ + S D R+W
Sbjct: 691 NVFATGSGDCKARIW 705
>7297305 [T] KOG0279 G protein beta subunit-like protein
Length = 318
Score = 51.2 bits (121), Expect = 2e-06
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 41/200 (20%)
Query: 178 GNKECIYQATFSPHDPNLVLCSSGNSFISLYDL---RVPNNGLPQHQFLGHGGFEA---L 231
G+ + Q +P DP+ ++ +S + + ++ L N G PQ + GH F + L
Sbjct: 13 GHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSHFISDVVL 72
Query: 232 TCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPH 291
+ D N +G D+ +++WDL + +GH V V +S
Sbjct: 73 SSDGN-----YALSGSWDQTLRLWDLAAGK----------TTRRFEGHTKDVLSVAFSAD 117
Query: 292 HSNMLLSTSYDMTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFME--HSEFVFGADWSL 349
+ ++S S D T ++W L++ C+F E H+++V +S
Sbjct: 118 N-RQIVSGSRDKTIKLWNTLAE-----------------CKFTIQEDGHTDWVSCVRFSP 159
Query: 350 WGTPGFVASTGWDGQVCIWN 369
+ + S GWD V +WN
Sbjct: 160 NHSNPIIVSCGWDRTVKVWN 179
>SPAC630.14c [R] KOG0266 WD40 repeat-containing protein
Length = 586
Score = 50.4 bits (119), Expect = 4e-06
Identities = 58/244 (23%), Positives = 106/244 (42%), Gaps = 32/244 (13%)
Query: 82 DGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSLMRPQSLM 141
D +R++DI K + H++E++S +++ K + VS S D V LW + + +
Sbjct: 355 DQQIRIWDIAQKRV-YRLLTGHEQEIYSLDFSKDGKTL-VSGSGDRTVCLWDVEAGEQKL 412
Query: 142 TMSPND-------TNAASTLSRTSAVAPVRVPMSNQKEHQHADGNKECIYQATFSPHDPN 194
+ +D + ++ S +R+ S+ + G++E +Y FSP
Sbjct: 413 ILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSPDGKY 472
Query: 195 LVLCSSGNSFISLYDLRVPNN---------GLPQHQFLGHGGFEALTCDFNKYRPHIIAT 245
LV S N+ I L++L+ +N G+ + F GH F L+ + II +
Sbjct: 473 LVSGSLDNT-IKLWELQCVSNVAPSMYKEGGICKQTFTGHKDF-ILSVTVSPDGKWII-S 529
Query: 246 GGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTC 305
G D+ I+ W L+ +QGH +V V SP + + + S D+
Sbjct: 530 GSKDRTIQFWSPDSPHSQLT----------LQGHNNSVISVAVSP-NGHCFATGSGDLRA 578
Query: 306 RVWT 309
R+W+
Sbjct: 579 RIWS 582
>7301796 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 436
Score = 50.4 bits (119), Expect = 4e-06
Identities = 53/209 (25%), Positives = 88/209 (41%), Gaps = 30/209 (14%)
Query: 112 WNMIQKQMFVSSSWDGKVKLWSLMRPQSLMT------------MSPNDTNAASTLSRTSA 159
+++I V+ S+DG K+WS QSL T P D + +T S +
Sbjct: 158 FSIIFSDKIVTGSFDGTAKVWSATSGQSLCTFYGHTAELVAAEFHPVDGKSIATASLDGS 217
Query: 160 VAPVRVPMSNQKEHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQ 219
V S++ + G + + A F+ D ++L S + +++D+R + G
Sbjct: 218 ARIYDVETSHELQQLTHHGAE--VIAARFN-RDGQMLLTGSFDHSAAIWDVRSKSLG--- 271
Query: 220 HQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGH 279
HQ GH E C +N + +IATG +D ++WD R + L + H
Sbjct: 272 HQLRGHSA-ELSNCVWN-FSGSLIATGSLDNTARIWDTRKLDQELYLAAR---------H 320
Query: 280 ELAVRKVTWSPHHSNMLLSTSYDMTCRVW 308
V V++ +L + S D T RVW
Sbjct: 321 SDEVLDVSFDA-AGQLLATCSSDCTARVW 348
>7290743 [E] KOG0280 Uncharacterized conserved protein
Length = 435
Score = 50.4 bits (119), Expect = 4e-06
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 42/163 (25%)
Query: 219 QHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQG 278
+ +L HG FEA TC F+++ PHI+ +GG D ++ DLR ++ + +
Sbjct: 176 ERSWLSHG-FEAWTCAFDRWSPHILYSGGDDMLLMAHDLRTKQRAWTN----------RA 224
Query: 279 HELAVRKVTWSPHHSNMLLSTSYDMTCRVW---------TDLSDDGHGLTGKTNSIDP-- 327
H V + P H N LL+ SYD R++ +L G K + P
Sbjct: 225 HMAGVTCLLSHPRHENHLLTGSYDEQLRLFDTRSMKRSLAELDLSGGIWRLKPHPAQPDL 284
Query: 328 ------------------AHGCRFI--FMEHSEFVFGADWSLW 350
A G + + EH +GADW+ W
Sbjct: 285 ILAACMYTNFSVVQLDVAAPGLSLLGAYEEHKSICYGADWAPW 327
>YCR072c [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 515
Score = 49.7 bits (117), Expect = 7e-06
Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 41/199 (20%)
Query: 178 GNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNK 237
G+ I + F+PH + ++ +G++ ++D + P H GH + + C
Sbjct: 141 GHGSTILCSAFAPHTSSRMVTGAGDNTARIWDC---DTQTPMHTLKGH--YNWVLCVSWS 195
Query: 238 YRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHH----- 292
+IATG +D I++WD + + + + ++GH + ++W P H
Sbjct: 196 PDGEVIATGSMDNTIRLWDPKSGQCL---------GDALRGHSKWITSLSWEPIHLVKPG 246
Query: 293 -SNMLLSTSYDMTCRVWTDLSD-DGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLW 350
L S+S D T ++W +S + ++G TNS+ W
Sbjct: 247 SKPRLASSSKDGTIKIWDTVSRVCQYTMSGHTNSVSCVK--------------------W 286
Query: 351 GTPGFVASTGWDGQVCIWN 369
G G + S D V +W+
Sbjct: 287 GGQGLLYSGSHDRTVRVWD 305
>Hs4758560 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 357
Score = 49.7 bits (117), Expect = 7e-06
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 28/223 (12%)
Query: 96 PIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSL---------MRPQSLMTMSPN 146
PI + H+ EV+ C ++ S+ +D + LW++ ++ S M +
Sbjct: 58 PIMLLSGHEGEVYCCKFHP-NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH 116
Query: 147 DTNAASTLSRTSAVAPVRVPMSNQKEH-QHADGNKECIYQATFSPHDPNLVLCSSGNSFI 205
S L S V V S E + G+ + + P LV S + +
Sbjct: 117 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARKSPQLVCTGSDDGTV 176
Query: 206 SLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLS 265
L+D+R + Q ++ L FN II+ GG+D IKVWDLR + +
Sbjct: 177 KLWDIR-KKAAIQTFQ----NTYQVLAVTFNDTSDQIIS-GGIDNDIKVWDLRQNKLTYT 230
Query: 266 QGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVW 308
++GH +V ++ S S LLS + D T RVW
Sbjct: 231 ----------MRGHADSVTGLSLSSEGS-YLLSNAMDNTVRVW 262
>Hs16554627 [R] KOG0266 WD40 repeat-containing protein
Length = 334
Score = 49.7 bits (117), Expect = 7e-06
Identities = 56/260 (21%), Positives = 107/260 (40%), Gaps = 31/260 (11%)
Query: 62 GLFDLAWNESHENQCLVAQGDGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMFV 121
G+ D+AW+ S N + A D +L+++D+ + K H VF CN+N Q + V
Sbjct: 89 GISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNP-QSNLIV 145
Query: 122 SSSWDGKVKLWSLMRPQSLMTMSP----------NDTNAASTLSRTSAVAPVRVPMSNQK 171
S S+D V++W + + L T+ N + S + + S Q
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 172 EHQHADGNKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFE-A 230
D + + FSP+ +L ++ ++ + L+D + G + GH +
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYC 261
Query: 231 LTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSP 290
+ +F+ I +G D ++ +W+L+ + ++QGH V P
Sbjct: 262 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKE----------IVQKLQGHTDVVISTACHP 311
Query: 291 HHSNMLLSTSY--DMTCRVW 308
N++ S + D T ++W
Sbjct: 312 -TENIIASAALENDKTIKLW 330
>Hs13629793 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 357
Score = 49.7 bits (117), Expect = 7e-06
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 28/223 (12%)
Query: 96 PIAIYKEHQREVFSCNWNMIQKQMFVSSSWDGKVKLWSL---------MRPQSLMTMSPN 146
PI + H+ EV+ C ++ S+ +D + LW++ ++ S M +
Sbjct: 58 PIMLLSGHEGEVYCCKFHP-NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH 116
Query: 147 DTNAASTLSRTSAVAPVRVPMSNQKEH-QHADGNKECIYQATFSPHDPNLVLCSSGNSFI 205
S L S V V S E + G+ + + P LV S + +
Sbjct: 117 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV 176
Query: 206 SLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIKVWDLRMCRKMLS 265
L+D+R + Q ++ L FN II+ GG+D IKVWDLR + +
Sbjct: 177 KLWDIR-KKAAIQTFQ----NTYQVLAVTFNDTSDQIIS-GGIDNDIKVWDLRQNKLTYT 230
Query: 266 QGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVW 308
++GH +V ++ S S LLS + D T RVW
Sbjct: 231 ----------MRGHADSVTGLSLSSEGS-YLLSNAMDNTVRVW 262
>Hs13376761 [S] KOG0293 WD40 repeat-containing protein
Length = 367
Score = 49.7 bits (117), Expect = 7e-06
Identities = 73/310 (23%), Positives = 125/310 (39%), Gaps = 41/310 (13%)
Query: 14 VAYSPFYDNKLAVASGSNFGLVGNGKLIILDIMPNGQLVESNSFLTQD--GLFDLAWNES 71
V + F ++ +A+GS + +II + P+ L++ L G+ +AW S
Sbjct: 64 VWFCKFSNDGTKLATGSK-----DTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAW--S 116
Query: 72 HENQCLVAQGD---GSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMI--------QKQMF 120
++ LVA G L L++++ + + + H+ + S WN Q+ F
Sbjct: 117 PDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQF 176
Query: 121 VSSSWDGKV-KLWSLMRPQSLMTMSPNDTNAAS-TLSRTSAVAPVRVPMSNQKEHQHADG 178
DG + W +R Q L +S T AS T R + N + H
Sbjct: 177 YQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHP-- 234
Query: 179 NKECIYQATFSPHDPNLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKY 238
I T S + L L + + L+DL+ + ++Q + G + +C F +
Sbjct: 235 ----IMSFTISKNG-RLALLNVATQGVHLWDLQ-DRVLVRKYQGVTQGFYTIHSC-FGGH 287
Query: 239 RPHIIATGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLS 298
IA+G D + +W R + I E+ GH V V+W+P +M+ S
Sbjct: 288 NEDFIASGSEDHKVYIWHKR----------SELPIAELTGHTRTVNCVSWNPQIPSMMAS 337
Query: 299 TSYDMTCRVW 308
S D T R+W
Sbjct: 338 ASDDGTVRIW 347
>7296695 [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 439
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 63 LFDLAWNESHENQCLVAQGDGSLRLFDIKLKDYPIAIYKEHQREVFSCNWNMIQKQMFVS 122
+ DL WN++ N + A D L+LFDI+ + +++ H++E S +W+ I + +F S
Sbjct: 318 VMDLKWNDNG-NWLVTASRDHLLKLFDIRNLREEVQVFRGHKKEASSVSWHPIHEGLFCS 376
Query: 123 SSWDGKVKLWSLMR 136
DG + W++ R
Sbjct: 377 GGSDGSILFWNVGR 390
>YLR208w [U] KOG1332 Vesicle coat complex COPII subunit SEC13
Length = 297
Score = 49.3 bits (116), Expect = 9e-06
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 245 TGGVDKMIKVWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHH--SNMLLSTSYD 302
TGG D ++K+W K S + + ++GH VR V WSP + L S S D
Sbjct: 175 TGGADNLVKIW------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 303 MTCRVWTDLSDDGHGLTGKTNSIDPAHGCRFIFMEHSEFVFGADWSLWGTPGFVASTGWD 362
TC +WT D+ G KT + + + ++ A WSL G +A +G D
Sbjct: 229 RTCIIWT--QDNEQGPWKKTLLKEE---------KFPDVLWRASWSLSG--NVLALSGGD 275
Query: 363 GQVCIW 368
+V +W
Sbjct: 276 NKVTLW 281
>At4g35370 [S] KOG0270 WD40 repeat-containing protein
Length = 414
Score = 49.3 bits (116), Expect = 9e-06
Identities = 37/131 (28%), Positives = 54/131 (40%), Gaps = 10/131 (7%)
Query: 194 NLVLCSSGNSFISLYDLRVPNNGLPQHQFLGHGGFEALTCDFNKYRPHIIATGGVDKMIK 253
N V + S I ++DL + N LP Q G FN +I+A+G DK +K
Sbjct: 181 NFVAIGTMESSIEIWDLDLVNEVLPCVQLGRIAGQTLFFLTFNWENRNIVASGSEDKKVK 240
Query: 254 VWDLRMCRKMLSQGHQPININEIQGHELAVRKVTWSPHHSNMLLSTSYDMTCRVWTDLSD 313
VWD+ + ++ H HE V V W+ + +LLS S D T +
Sbjct: 241 VWDVATGKCKVTMEH----------HEKKVHAVAWNNYTPEVLLSGSRDRTVVLKDGRDP 290
Query: 314 DGHGLTGKTNS 324
GL T +
Sbjct: 291 SNSGLKWSTEA 301
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,805,798
Number of Sequences: 60738
Number of extensions: 1088615
Number of successful extensions: 5193
Number of sequences better than 1.0e-05: 42
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 4894
Number of HSP's gapped (non-prelim): 170
length of query: 372
length of database: 30,389,216
effective HSP length: 108
effective length of query: 264
effective length of database: 23,829,512
effective search space: 6290991168
effective search space used: 6290991168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)