ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1091 check: MH K KOG0385 Transcription Chromatin remodeling complex WSTF-ISWI, small subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1091 375999 378476 826
(826 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 882 0.0
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 458 e-128
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 420 e-117
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 402 e-111
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 400 e-111
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 399 e-110
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 396 e-110
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 395 e-109
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 393 e-109
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 390 e-108
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 380 e-105
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 374 e-103
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 369 e-101
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 367 e-101
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 366 e-101
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 364 e-100
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 361 2e-99
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 361 2e-99
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 357 3e-98
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 354 4e-97
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 350 7e-96
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 341 3e-93
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 340 5e-93
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 336 1e-91
Hs4557453 [R] KOG0383 Predicted helicase 332 1e-90
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 330 4e-90
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 330 7e-90
Hs4557451 [R] KOG0383 Predicted helicase 329 9e-90
CE03657 [R] KOG0383 Predicted helicase 329 9e-90
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 326 8e-89
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 325 1e-88
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 323 7e-88
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 323 7e-88
Hs20533808 [R] KOG0383 Predicted helicase 320 6e-87
At2g25170 [R] KOG0383 Predicted helicase 320 7e-87
CE17716 [R] KOG0383 Predicted helicase 317 6e-86
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 316 1e-85
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 306 6e-83
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 304 3e-82
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 302 1e-81
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 297 5e-80
At5g44800 [R] KOG0383 Predicted helicase 297 5e-80
SPBP35G2.10 [R] KOG0383 Predicted helicase 296 7e-80
7293795 [R] KOG0383 Predicted helicase 295 2e-79
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 291 3e-78
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 289 1e-77
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 286 9e-77
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 286 1e-76
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 285 3e-76
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 283 6e-76
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 281 4e-75
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 280 8e-75
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 268 2e-71
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 259 1e-68
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 256 8e-68
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 253 1e-66
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 244 5e-64
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 243 9e-64
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 241 4e-63
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 240 6e-63
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 231 3e-60
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 231 4e-60
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 229 1e-59
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 227 6e-59
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 226 1e-58
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 224 5e-58
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 223 1e-57
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 222 2e-57
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 219 1e-56
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 215 2e-55
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 213 1e-54
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 210 6e-54
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 207 4e-53
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 207 5e-53
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 206 2e-52
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 202 2e-51
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 200 8e-51
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 199 1e-50
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 197 4e-50
7295868 [L] KOG0390 DNA repair protein SNF2 family 197 5e-50
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 197 7e-50
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 192 1e-48
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 192 2e-48
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 191 5e-48
YGL163c [L] KOG0390 DNA repair protein SNF2 family 188 3e-47
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 187 4e-47
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 187 4e-47
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 187 6e-47
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 186 2e-46
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 183 1e-45
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 179 2e-44
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 178 3e-44
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 174 7e-43
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 173 1e-42
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 169 2e-41
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 166 1e-40
CE23323 [L] KOG0390 DNA repair protein SNF2 family 163 1e-39
At4g31900 [R] KOG0383 Predicted helicase 160 1e-38
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 153 1e-36
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 146 1e-34
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 139 1e-32
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 135 2e-31
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 134 7e-31
At2g21450 [L] KOG0390 DNA repair protein SNF2 family 124 8e-28
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 123 1e-27
7293730 [R] KOG0383 Predicted helicase 122 2e-27
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 120 1e-26
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 117 9e-26
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 117 9e-26
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 117 9e-26
YBR073w [L] KOG0390 DNA repair protein SNF2 family 113 1e-24
Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 112 2e-24
Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase 112 2e-24
At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 112 3e-24
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 109 2e-23
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 109 2e-23
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 106 1e-22
CE25143 [L] KOG0390 DNA repair protein SNF2 family 106 2e-22
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 105 3e-22
At3g42670 [L] KOG0390 DNA repair protein SNF2 family 104 5e-22
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 104 6e-22
At2g16390 [L] KOG0390 DNA repair protein SNF2 family 103 1e-21
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 102 2e-21
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 102 2e-21
7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 102 3e-21
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 101 4e-21
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 100 1e-20
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 100 2e-20
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 99 3e-20
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 98 5e-20
At5g20420 [L] KOG0390 DNA repair protein SNF2 family 98 6e-20
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 97 1e-19
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 96 2e-19
7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 96 2e-19
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 96 3e-19
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 94 7e-19
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 94 7e-19
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 94 1e-18
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 93 2e-18
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 92 4e-18
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 92 4e-18
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 90 1e-17
ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 82 3e-15
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 80 2e-14
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 79 3e-14
SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcr... 75 4e-13
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 74 1e-12
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 73 2e-12
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 73 2e-12
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 73 2e-12
Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 69 4e-11
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 67 1e-10
SPAC11E3.01c [R] KOG0391 SNF2 family DNA-dependent ATPase 64 9e-10
SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLT... 64 1e-09
CE23294 [KL] KOG4439 RNA polymerase II transcription termination... 63 2e-09
Hs22048060 [K] KOG0384 Chromodomain-helicase DNA-binding protein 58 5e-08
Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcr... 56 3e-07
7295362 [L] KOG0298 DEAD box-containing helicase-like transcript... 55 3e-07
At2g25020 [L] KOG0390 DNA repair protein SNF2 family 55 6e-07
At3g31900 [L] KOG0390 DNA repair protein SNF2 family 51 8e-06
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 882 bits (2278), Expect = 0.0
Identities = 455/746 (60%), Positives = 552/746 (73%), Gaps = 32/746 (4%)
Query: 22 SYKEKSENDLTADVYLXXXXXXXXXXXXXE------PIWLDGKXXXXXXXXXXXXXXXXX 75
+Y+EK NDLTAD+ + PIWL
Sbjct: 33 NYREKEVNDLTADISDSDSDLDSEDNKHGKGDNDTAPIWLQDDVHSDEDIQLDSEDDSDT 92
Query: 76 XXXXXXXLIDEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSI 135
++D+ + K+ + DE E D+ T+SLK+KKL EFV+QSQVYSSI
Sbjct: 93 EAVQAQ-VVDKLAKDTKSEQKSL-----DDELSEMDTKTVSLKLKKLNEFVRQSQVYSSI 146
Query: 136 IADTLLERAGQ------------NDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSL- 182
IADTLL R+ + +DE+ + +K+K KK++I K+ + ++ +
Sbjct: 147 IADTLLHRSNEVANANTKDNSNSDDEEHSSKKRKTKKKSITDFFKKQKKNEDTTTQNGAP 206
Query: 183 -SSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYE 241
++ QP LKNC LKPYQ EGLNWLITLYENGLNGILADEMGLGKT+QSIALLAFIYE
Sbjct: 207 DDAAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYE 266
Query: 242 MDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGV 301
MDTKGPFL+ APLST++NWMNEFA+FAPD+PVLKYY + G R A + FFK + G G+
Sbjct: 267 MDTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGI 326
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
+ITSYEII+RD +LI+S WKFLIVDEGHRLKNINC+LI+ELK+INTSNRLLLTGTPLQN
Sbjct: 327 VITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQN 386
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNL--ESSSEKLTKIINDELEKNLISNLH 419
NL ELWSLLNFI+P+IF+DFEIFNKWFDF LNL S+SE L K+INDEL+KNLISNLH
Sbjct: 387 NLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLH 446
Query: 420 TILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDF 479
TILKPFLLRRLKK VLA LPPKREYII CP+T Q+K+YK L G LK+T+ K+ IKDF
Sbjct: 447 TILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIKDF 506
Query: 480 FTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIG----KMEKLYDMHIHKELLNKRL 535
FTLN EYIG VSN+SIRDFI +KLS + ++ I +M+KLY ++ E+ NK+L
Sbjct: 507 FTLNDEYIGHVSNRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISNKKL 566
Query: 536 QNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFS 595
QNMM+QLRQI++ST+LFYFP L P DLTLE LLKTSGKLQ+LQKL+P LI + HKVLI+S
Sbjct: 567 QNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYS 626
Query: 596 QFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGI 655
QFV+MLDLIEDW +LN+F + RIDGS+ N +RK+Q+E+F+ K N+FLLSTRAAGLGI
Sbjct: 627 QFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGI 686
Query: 656 NLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRK 715
NL AD+V++FDSDWNPQVDLQAMDR HRIGQ PVIVYRL CDNTIE+VI+TRA NKR
Sbjct: 687 NLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRN 746
Query: 716 LEKLVIQMGKFNTLKKLAFNEQTFLK 741
LE++VIQMGKFN LKKLA NE F +
Sbjct: 747 LERMVIQMGKFNNLKKLALNEGFFFE 772
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 458 bits (1178), Expect = e-128
Identities = 290/716 (40%), Positives = 408/716 (56%), Gaps = 80/716 (11%)
Query: 100 KNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQNDEDETPQKKKQK 159
K E+ DEN + + + E +Q+++ +SII D L E QN + +K
Sbjct: 155 KKENEDENSSSTNLCV--------EDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCN 206
Query: 160 KEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGI 219
+ + F QP ++ YQ EG+ WL L+ENG+NGI
Sbjct: 207 GQPVP---------------------FQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGI 245
Query: 220 LADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNS 279
LADEMGLGKT+Q IA +A + + GPFL+ PLST+ NWM EF RF PDIP + Y+ +
Sbjct: 246 LADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGT 305
Query: 280 EGQAARHAMMGKFFKNNKG----EGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNI 335
Q R ++ +K KG V+ITS+EI +RD + WK+LIVDEGHR+KN+
Sbjct: 306 --QEERQKLVRNIYKR-KGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNM 362
Query: 336 NCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNL 395
C+LIRELKR N N+LLLTGTPLQNNL ELWSLLNF+LP++F D + F WFD + L
Sbjct: 363 KCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSL-- 420
Query: 396 ESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQ 455
SE II E E+N++ LH IL PFLLRRLK +V A +PPKRE ++ P++ Q
Sbjct: 421 ---SETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDV-ALEVPPKREVVVYAPLSKKQ 476
Query: 456 KKYYKQALK---GNLKQTIQKQAIKDFFT--LNAEYIGTVSNKSIRDFIEWKLSADSQDI 510
+ +Y + N+ + +K+ I+ T +++ I DF SQ
Sbjct: 477 EIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQ 536
Query: 511 PNDNIGKMEKLYDMHIHKEL-LNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTL---EN 566
P + + + +++I E +N +LQN+M+ LR+ N YL +P ++P E
Sbjct: 537 P--EVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYP-IDPVTQEFKIDEE 593
Query: 567 LLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
L+ SGK +L +++PEL K+ HKVL+FSQ SMLD++ D+ L +F R+DGSM +
Sbjct: 594 LVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSE 653
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R++ + F+ + +FL+STRA GLGINLTAAD+VII+DSDWNPQ DLQA DR HRIG
Sbjct: 654 REKNMHSFN-TDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 712
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSS 746
QTKPV+VYRL NTI+ I+ RA KRKLEKL+I F G S
Sbjct: 713 QTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFK---------------GGQS 757
Query: 747 LATTTKQSANKELVKELSQLLISNETNQGQADTSKIENS-DDILEESEMKELLDRS 801
+K + KEL +LL S + + +I+ S + ++ + +++ LLDRS
Sbjct: 758 GLNLSKNFLDP---KELMELLKSRDYER------EIKGSREKVISDKDLELLLDRS 804
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 420 bits (1080), Expect = e-117
Identities = 262/668 (39%), Positives = 372/668 (55%), Gaps = 96/668 (14%)
Query: 96 EDAAKNEDSDENFENDSHTISLKIK-----KLQEFVQQSQVYSSIIADTL-------LER 143
E K + +E N ++ + KL E + Q+Q+YS + + + +E
Sbjct: 72 EQLLKLREDEEKANNAGSAVAPNLNETQFTKLDELLTQTQLYSEFLLEKMEDITINGIES 131
Query: 144 AGQNDEDETPQKKKQKKEAIQ---TLMKR------DEPKDEGSPSTSLSSSFMQPSFLKN 194
Q E E + +++K A Q T KR K++G S + L+N
Sbjct: 132 ESQKAEPEKTGRGRKRKAASQYNNTKAKRAVAAMISRSKEDGETINSDLTEEETVIKLQN 191
Query: 195 --C------QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKG 246
C QLK YQ +G+ WLI+L++NGLNGILAD+MGLGKTIQ+I L+ + G
Sbjct: 192 ELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDG 251
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEG--VIIT 304
P+L+ APLST+ NW NE ARF P I + Y+ + Q R + K G ++IT
Sbjct: 252 PYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQ--RDELRRKHMPKTVGPKFPIVIT 309
Query: 305 SYEIIIRDIELILS-YQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
SYE+ + D + IL Y WK++++DEGHRLKN CKL+RELK + N+LLLTGTPLQNNL
Sbjct: 310 SYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNL 369
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
ELWSLLNFILP+IF+ + F WFDFS E + + TK ++ ++S LH IL+
Sbjct: 370 SELWSLLNFILPDIFTSHDEFESWFDFS----EKNKNEATKEEEEKRRAQVVSKLHGILR 425
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLN 483
PF+LRR+K +V SLP K+E I+ +T QKK+ + + L+ + + AI+
Sbjct: 426 PFILRRMKCDVEL-SLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRG----- 479
Query: 484 AEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLR 543
WK +L N++IQLR
Sbjct: 480 ---------------QGWK------------------------------GKLNNLVIQLR 494
Query: 544 QIVNSTYLFYFPL----LEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVS 599
+ N L + L P +E ++ GK ++L++L+ L HKVLIFSQ+
Sbjct: 495 KNCNHPDLLQGQIDGSYLYP---PVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTK 551
Query: 600 MLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTA 659
+LD+++ + F CRIDGS++ + R+ QI++FS + S ++FLLSTRA GLGINLTA
Sbjct: 552 LLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTA 611
Query: 660 ADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKL 719
AD+ I++DSDWNPQ+DLQAMDR HRIGQTKPV VYRL +IE ++ RA +K KLE +
Sbjct: 612 ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHV 671
Query: 720 VIQMGKFN 727
VI G+F+
Sbjct: 672 VIGQGQFH 679
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 402 bits (1032), Expect = e-111
Identities = 262/743 (35%), Positives = 399/743 (53%), Gaps = 128/743 (17%)
Query: 88 SAGRKASSEDAAKNEDSDENFENDSHTIS-------LKIKKLQEFVQQSQVYSSIIADT- 139
S G A ED ++E+ +E E + LK +K+QE ++ +SI AD
Sbjct: 54 SDGEAAPVEDDYEDEEDEEKAEISKREKARLKEMQKLKKQKIQEMLESQN--ASIDADMN 111
Query: 140 ---------------LLERAGQNDEDETPQKKKQK---------KEAIQTLMKRDEPKDE 175
L ++D + +K K + +E + +K +E
Sbjct: 112 NKGKGRLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLT 171
Query: 176 GSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIAL 235
GS +T L + QPS ++ +++ YQ GLNWLI LYENG+NGILADEMGLGKT+Q+I+L
Sbjct: 172 GSGNTRLLT---QPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL 227
Query: 236 LAFIYEM-DTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHA-----MM 289
LA+++E GP ++ AP ST+ NWMNE RF P + +K+ + + RH +
Sbjct: 228 LAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNP-EERRHIREDLLVA 286
Query: 290 GKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTS 349
GKF + +TS+E+ I++ + + W+++I+DE HR+KN N L + ++ +T+
Sbjct: 287 GKF-------DICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTN 339
Query: 350 NRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDE 409
RLL+TGTPLQNNL ELW+LLNF+LP IFS E F++WF S ND+
Sbjct: 340 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISG-------------ENDQ 386
Query: 410 LEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQ 469
E ++ LH +L+PFLLRRLK +V G LPPK+E I+ ++ +QK+YYK L+
Sbjct: 387 QE--VVQQLHKVLRPFLLRRLKSDVEKG-LPPKKETILKVGMSQMQKQYYKALLQ----- 438
Query: 470 TIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKE 529
KD +NA G+ ++L
Sbjct: 439 -------KDLEAVNAG------------------------------GERKRLL------- 454
Query: 530 LLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKH 589
N+ +QLR+ N YLF P T ++L+ +GK+ +L KL+P+L ++
Sbjct: 455 -------NIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDS 507
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
+VLIFSQ +LD++ED+ ++ CRIDG+ + R IE ++K GS+ +FLLSTR
Sbjct: 508 RVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTR 567
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
A GLGINL AD VI++DSDWNPQVDLQA DRAHRIGQ K V V+R ++ IE ++ R
Sbjct: 568 AGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIER 627
Query: 710 AVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKM--NGSSLATTTKQSANKELVKELSQLL 767
A K L+ LVIQ G+ K + N+ L+M G+ + ++K S + +++ +++
Sbjct: 628 AYKKLALDALVIQQGRLAEQKSKSVNKDELLQMVRYGAEMVFSSKDSTITD--EDIDRII 685
Query: 768 ISNETNQGQADTSKIENSDDILE 790
E + D + ++D ++
Sbjct: 686 AKGEEATAELDAKMKKFTEDAIQ 708
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 400 bits (1029), Expect = e-111
Identities = 244/711 (34%), Positives = 395/711 (55%), Gaps = 89/711 (12%)
Query: 94 SSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQNDEDETP 153
++ DAA + ++ E D+ + + ++ ++Q+++++ + ++ +
Sbjct: 19 TTSDAATSSSGEKEAEFDNKIEADRSRRFDFLLKQTEIFTHFMTNSAKSPTKPKGRPKKI 78
Query: 154 QKKKQKKEAIQTLMKRDEPKD------EGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNW 207
+ K ++K+ ++ E ++ E S + + P+++K+ +++ YQ GLNW
Sbjct: 79 KDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNW 138
Query: 208 LITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK-GPFLIAAPLSTVENWMNEFAR 266
+I+LYENG+NGILADEMGLGKT+Q+I+LL ++ + GP ++ P ST++NW+NEF +
Sbjct: 139 MISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKK 198
Query: 267 FAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIV 326
+ P + + Q R+ + + + V +TSYE+ IR+ + + W++L++
Sbjct: 199 WCPSLRAVCLIGD--QDTRNTFIRDVLMPGEWD-VCVTSYEMCIREKSVFKKFNWRYLVI 255
Query: 327 DEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNK 386
DE HR+KN KL L+ T+NRLL+TGTPLQNNL ELW+LLNF+LP++F+ E F++
Sbjct: 256 DEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDE 315
Query: 387 WFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYI 446
WF+ + D+ LI+ LH +LKPFLLRRLK V L PK+E
Sbjct: 316 WFN------------TNTCLGDDA---LITRLHAVLKPFLLRRLKAEV-EKRLKPKKEMK 359
Query: 447 ITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSAD 506
I ++ +Q+ +Y + L +KD +N
Sbjct: 360 IFVGLSKMQRDWYTKVL------------LKDIDVVN----------------------- 384
Query: 507 SQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLEN 566
GK+EK+ RLQN+++QLR+ N YLF P T +
Sbjct: 385 -------GAGKVEKM------------RLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425
Query: 567 LLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
L+ SGK+ +L KL+P+L ++ +VLIFSQ MLD++ED+ N+ CR+DG +
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R QI+EF+ S LF+LSTRA GLGINL AD VII+DSDWNPQ+DLQAMDRAHRIG
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIG 545
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKF--NTLKKLAFNEQTFLKMNG 744
Q K V V+RL ++T+E I+ RA K +L+K+VIQ G+ N +L +E + G
Sbjct: 546 QKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRFG 605
Query: 745 SSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIENSDDILEESEMK 795
++ ++K++ ++ E +++ +G+A T++ + + D L ES ++
Sbjct: 606 ANQVFSSKET---DITDEDIDVIL----ERGEAKTAEQKAALDSLGESSLR 649
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 399 bits (1024), Expect = e-110
Identities = 258/735 (35%), Positives = 400/735 (54%), Gaps = 120/735 (16%)
Query: 92 KASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQ--NDE 149
KA + + + +E + D + K+ + ++Q+++++ I + + N +
Sbjct: 71 KAPKSEKEMDPEYEEKMKAD------RAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMK 124
Query: 150 DETPQKKKQKKEAIQTL-----MKRDEPKDEGSPSTSLSSSFM------QPSFLKNCQLK 198
P+ KK +K+++ + + ++ +DE S S +S + PS++K L+
Sbjct: 125 LGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLR 184
Query: 199 PYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFI-YEMDTKGPFLIAAPLSTV 257
YQ GLNWLI+LYENG+NGILADEMGLGKT+Q+IALL ++ + + GP ++ P ST+
Sbjct: 185 DYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTL 244
Query: 258 ENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEG---VIITSYEIIIRDIE 314
NWMNEF R+ P + V+ + + A F ++ G V +TSYE++I++
Sbjct: 245 HNWMNEFKRWVPSLRVICFVGDKDARAA------FIRDEMMPGEWDVCVTSYEMVIKEKS 298
Query: 315 LILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFIL 374
+ + W++L++DE HR+KN KL ++ ++NRLLLTGTPLQNNL ELW+LLNF+L
Sbjct: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358
Query: 375 PNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNV 434
P++F+ + F+ WFD TK N ++ L+ LH +LKPFLLRR+K +V
Sbjct: 359 PDVFNSADDFDSWFD-------------TK--NCLGDQKLVERLHAVLKPFLLRRIKTDV 403
Query: 435 LAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKS 494
SLPPK+E I ++ +Q+++Y + L +KD LN+
Sbjct: 404 -EKSLPPKKEIKIYLGLSKMQREWYTKIL------------MKDIDVLNSS--------- 441
Query: 495 IRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYF 554
GKM+K+ RL N+++QLR+ N YLF
Sbjct: 442 ---------------------GKMDKM------------RLLNILMQLRKCCNHPYLFDG 468
Query: 555 PLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFI 614
P T E+++ SGK+ VL KL+ +L ++ +VLIFSQ +LD++ED+ +
Sbjct: 469 AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYE 528
Query: 615 SCRIDGSMQNNSR------------KEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADS 662
CR+DG + R +E IE F+ S +F+LSTRA GLGINL +AD
Sbjct: 529 YCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADV 588
Query: 663 VIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQ 722
VI++DSDWNPQVDLQAMDRAHRIGQ KPV V+RL DNT+E I+ RA K +L+ +VIQ
Sbjct: 589 VILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 648
Query: 723 MGKF--NTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTS 780
G+ KLA E + +G++ +K+S EL+ I+ +G+ T+
Sbjct: 649 QGRLIDQQSNKLAKEEMLQMIRHGATHVFASKES-------ELTDEDITTILERGEKKTA 701
Query: 781 KIENSDDILEESEMK 795
++ + ES ++
Sbjct: 702 EMNERLQKMGESSLR 716
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 396 bits (1017), Expect = e-110
Identities = 252/730 (34%), Positives = 401/730 (54%), Gaps = 106/730 (14%)
Query: 83 LIDEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLE 142
+ D+ S G++ ++ D +E T + + + ++Q+++++ I +
Sbjct: 61 IFDDASPGKQKEIQEP------DPTYEEKMQTD--RANRFEYLLKQTELFAHFIQPAA-Q 111
Query: 143 RAGQNDEDETPQKKKQKKEAIQTLM-------KRDEPKD------EGSPSTSLSSSFMQ- 188
+ + P + + KK+ Q L+ +R E ++ E S +T++ + F
Sbjct: 112 KTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDS 171
Query: 189 PSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFI-YEMDTKGP 247
PS++K +L+ YQ GLNWLI+LYENG+NGILADEMGLGKT+Q+I+LL ++ + + GP
Sbjct: 172 PSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP 231
Query: 248 FLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYE 307
++ P ST+ NWM+EF R+ P + + + Q A A + + + V +TSYE
Sbjct: 232 HMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRA--AFVRDVLLPGEWD-VCVTSYE 288
Query: 308 IIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELW 367
++I++ + + W++L++DE HR+KN KL ++ T+NRLLLTGTPLQNNL ELW
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 368 SLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLL 427
SLLNF+LP++F+ + F+ WFD + N ++ L+ LH +L+PFLL
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFDTN---------------NCLGDQKLVERLHMVLRPFLL 393
Query: 428 RRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYI 487
RR+K +V SLPPK+E I ++ +Q+++Y + L +KD LN
Sbjct: 394 RRIKADV-EKSLPPKKEVKIYVGLSKMQREWYTRIL------------MKDIDILN---- 436
Query: 488 GTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVN 547
+ GKM+K+ RL N+++QLR+ N
Sbjct: 437 --------------------------SAGKMDKM------------RLLNILMQLRKCCN 458
Query: 548 STYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW 607
YLF P T +L+ SGK+ VL KL+P+L ++ +VLIFSQ +LD++ED+
Sbjct: 459 HPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDY 518
Query: 608 SELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFD 667
N+ CR+DG ++ R++ I +++ S +F+LSTRA GLGINL AD VI++D
Sbjct: 519 CMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 668 SDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKF- 726
SDWNPQVDLQAMDRAHRIGQTK V V+R DNT+E I+ RA K +L+ +VIQ G+
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLV 638
Query: 727 -NTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIENS 785
L K+ +E + +G++ +K+S E++ I +G T+++
Sbjct: 639 DQNLNKIGKDEMLQMIRHGATHVFASKES-------EITDEDIDGILERGAKKTAEMNEK 691
Query: 786 DDILEESEMK 795
+ ES ++
Sbjct: 692 LSKMGESSLR 701
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 395 bits (1014), Expect = e-109
Identities = 260/719 (36%), Positives = 387/719 (53%), Gaps = 110/719 (15%)
Query: 96 EDAAKNEDSDENFENDSHTISLKIKKLQEFVQQS------QVYSSIIADTLLER-AGQND 148
ED A+ ++ DE S ++K++Q+ +Q +SI AD E A
Sbjct: 66 EDDAEEDEEDEEKAEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMQTELFAHFAK 125
Query: 149 EDETPQKKKQKKEAIQTLMKRDEPKDE-----------GSPSTSLSSSFMQPSFLKNCQL 197
D +P +KK K + +E +DE GS T L + QP+ ++ +L
Sbjct: 126 SDPSPSQKKGKGRGRHSSKLTEEEEDEECLKEEEGGIVGSGGTRLLT---QPACIQG-KL 181
Query: 198 KPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM-DTKGPFLIAAPLST 256
+ YQ GLNWLI LYENG+NGILADEMGLGKT+Q+I+LLA+++E GP ++ AP ST
Sbjct: 182 RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKST 241
Query: 257 VENWMNEFARFAPDIPVLKYYNSEGQAARHA-----MMGKFFKNNKGEGVIITSYEIIIR 311
+ NWMNE RF P + +K+ + + RH + GKF + +TS+E+ I+
Sbjct: 242 LGNWMNEIRRFCPVLRAVKFLGNP-EERRHIREELLVAGKF-------DICVTSFEMAIK 293
Query: 312 DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLN 371
+ + + W+++I+DE HR+KN N L + ++ +T+ RLL+TGTPLQNNL ELW+LLN
Sbjct: 294 EKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLN 353
Query: 372 FILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLK 431
F+LP +FS E F++WF S N D+ E ++ LH +L+PFLLRRLK
Sbjct: 354 FLLPEVFSSAETFDEWFQISGEN-------------DQQE--VVQQLHKVLRPFLLRRLK 398
Query: 432 KNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVS 491
+V G LPPK+E I+ ++ +Q KQ K L+ KD +N
Sbjct: 399 SDVEKG-LPPKKETILKVGMSQMQ----KQYYKALLQ--------KDLEVVN-------- 437
Query: 492 NKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYL 551
G E+ KRL N+ +QLR+ N YL
Sbjct: 438 ------------------------GGGER------------KRLLNIAMQLRKCCNHPYL 461
Query: 552 FYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELN 611
F P T ++L+ +GK+ +L KL+P+L + +VLIFSQ +LD++ED+
Sbjct: 462 FQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYR 521
Query: 612 NFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWN 671
+ CRIDG+ + R IE ++K GS+ +FLLSTRA GLGINL AD VI++DSDWN
Sbjct: 522 GYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWN 581
Query: 672 PQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKK 731
PQVDLQA DRAHRIGQ K V V+R +N IE ++ RA K L+ LVIQ G+ K
Sbjct: 582 PQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKT 641
Query: 732 LAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIENSDDILE 790
+ +E + G+ + ++K S + +++ +++ E + D + ++D ++
Sbjct: 642 VNKDELLQMVRYGAEMVFSSKDSTITD--EDIDRIIAKGEEATAELDAKMKKFTEDAIQ 698
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 393 bits (1010), Expect = e-109
Identities = 240/623 (38%), Positives = 348/623 (55%), Gaps = 86/623 (13%)
Query: 113 HTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQNDEDETPQKKKQKKEAIQTLMKRDEP 172
H I K K +F Q V + + G+ + ++K + +E + L + D
Sbjct: 121 HFIESKAAKDPKFRQVLDV----LEENKANGKGKGKHQDVRRRKTEHEEDAELLKEEDSD 176
Query: 173 KDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQS 232
DE S+ F + N QL+PYQ +G+NWL++L++N + GILADEMGLGKT+Q+
Sbjct: 177 DDE-----SIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQT 231
Query: 233 IALLAFI-YEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAA---RHAM 288
I+ L ++ Y GPFL+ AP ST+ NW+ E R+ PD+ + + A + +
Sbjct: 232 ISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKL 291
Query: 289 MGKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINT 348
+G F V+I SYEIIIR+ + W+++I+DE HR+KN L + L+ +
Sbjct: 292 LGCDFD------VVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTS 345
Query: 349 SNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIIND 408
NRLL+TGTPLQNNL ELW+LLNF+LP+IFSD + F+ WF SSE +
Sbjct: 346 RNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWF---------SSES-----TE 391
Query: 409 ELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLK 468
E + ++ LHT+L+PFLLRR+K +V SL PK+E + ++ +QKK+YK+ L+ +L
Sbjct: 392 EDQDKIVKQLHTVLQPFLLRRIKSDV-ETSLLPKKELNLYVGMSSMQKKWYKKILEKDL- 449
Query: 469 QTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHK 528
D N + G E
Sbjct: 450 ----------------------------------------DAVNGSNGSKES-------- 461
Query: 529 ELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKK 588
RL N+M+QLR+ N YLF P T E+L+ + KLQVL KL+ +L ++
Sbjct: 462 ---KTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEEG 518
Query: 589 HKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLST 648
+VLIFSQ +LD++ED+ N+ CRIDGS + R + I++++ SK +FLL+T
Sbjct: 519 SRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTT 578
Query: 649 RAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMT 708
RA GLGINLT+AD V+++DSDWNPQ DLQAMDRAHRIGQ K V V+RL DN++E I+
Sbjct: 579 RAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILE 638
Query: 709 RAVNKRKLEKLVIQMGKFNTLKK 731
RA K +L++LVIQ + + KK
Sbjct: 639 RATQKLRLDQLVIQQNRTSLKKK 661
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 390 bits (1002), Expect = e-108
Identities = 240/611 (39%), Positives = 348/611 (56%), Gaps = 82/611 (13%)
Query: 156 KKQKKEAIQTLMKRDEPK--DEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYE 213
+K +KE LM +E + D +S S PSF+K+ +L+ YQ +GLNWLI+L+E
Sbjct: 144 RKTEKEEDAELMADEEEEIVDTYQEDIFVSES---PSFVKSGKLRDYQVQGLNWLISLHE 200
Query: 214 NGLNGILADEMGLGKTIQSIALLAFI-YEMDTKGPFLIAAPLSTVENWMNEFARFAPDIP 272
N L+GILADEMGLGKT+Q+I+ L ++ Y +GPFLI P ST++NW EF ++ P++
Sbjct: 201 NKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVN 260
Query: 273 VLKYYNSEGQAA---RHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEG 329
VL + + A R+ ++ F V+ITSYE++IR+ + W+++++DE
Sbjct: 261 VLVLHGDKDTRADIVRNIILEARFD------VLITSYEMVIREKNALKRLAWQYIVIDEA 314
Query: 330 HRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFD 389
HR+KN L + ++ + NRLL+TGTPLQNNL ELW+LLNF+LP+IF D E+F++WF+
Sbjct: 315 HRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE 374
Query: 390 FSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITC 449
+++SE+ +I+ I LH++L PFLLRR+K +V SL PK E +
Sbjct: 375 ------QNNSEQDQEIV--------IQQLHSVLNPFLLRRVKADV-EKSLLPKIETNVYV 419
Query: 450 PVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQD 509
+T +Q ++YK L+ ++ D
Sbjct: 420 GMTDMQIQWYKSLLEKDI-----------------------------------------D 438
Query: 510 IPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLK 569
N +GK E RL N+++QLR+ N YLF P T E+L+
Sbjct: 439 AVNGAVGKREG-----------KTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLIF 487
Query: 570 TSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKE 629
SGK+ +L KL+ L +K +VLIFSQ +LD++ED+ +F CRIDGS + R E
Sbjct: 488 NSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIE 547
Query: 630 QIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTK 689
I+E++K S+ +FLL+TRA GLGINL AD+VI+FDSDWNPQ DLQAMDRAHRIGQ K
Sbjct: 548 AIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKK 607
Query: 690 PVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLAT 749
V VYR +N IE ++ RA K +L++LVIQ G L ++ L M
Sbjct: 608 QVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKDDLLDMIQFGAKN 667
Query: 750 TTKQSANKELV 760
++ A+K V
Sbjct: 668 MFEKKASKVTV 678
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 380 bits (976), Expect = e-105
Identities = 261/765 (34%), Positives = 393/765 (51%), Gaps = 119/765 (15%)
Query: 84 IDEKSAGRKASSEDAAKNED--------------------SDENFENDSHTISLKIKKLQ 123
+ E+S G+ + + A K E+ DE E + + + +K
Sbjct: 411 VRERSTGKALTGDQAPKTEEIEFWLETHPEYEIVPRDQLSDDEEEEEEEAPVEPEEEKDD 470
Query: 124 EFVQQSQVYSSIIADTLLERAGQNDEDETPQK-KKQKKEAIQTLMKRDEPKDEGSPSTSL 182
++ + A +LE+A +N+EDE QK KKQ + T K E + T++
Sbjct: 471 QYAGMDEETK---AKMILEKA-RNEEDEYDQKTKKQMADYYATAHKIKEKVVK--QHTTM 524
Query: 183 SSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM 242
P+ L LKPYQ +GL W+++LY N LNGILADEMGLGKTIQ+I+L+ ++ E+
Sbjct: 525 GGG--DPNLL----LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEV 578
Query: 243 -DTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGV 301
GP+L+ PLST+ NW NEFA++AP + + Y ++ AR + G+ K V
Sbjct: 579 KQNNGPYLVIVPLSTLSNWQNEFAKWAPSVTTIIYKGTKD--ARRRVEGQIRKG--AFNV 634
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKR-INTSNRLLLTGTPLQ 360
++T+YE +I++ L+ +WK++I+DEGHRLKN NCKL L + +RLLLTGTPLQ
Sbjct: 635 LMTTYEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQ 694
Query: 361 NNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHT 420
N L ELW+LLNF+LP+IFS F +WF + ++ EK+ +N E +I LH
Sbjct: 695 NKLPELWALLNFLLPSIFSSCGTFEQWF---NAPFATTGEKVE--LNQEETMLIIRRLHK 749
Query: 421 ILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFF 480
+L+PFLLRRLKK V LP K EY+I C + LQK Y+ KG L
Sbjct: 750 VLRPFLLRRLKKEV-ESQLPDKTEYVIKCDQSALQKVIYRHMQKGLL------------- 795
Query: 481 TLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMI 540
++ K+S+ ++ L N ++
Sbjct: 796 ------------------LDAKMSSGARS-------------------------LMNTVV 812
Query: 541 QLRQIVNSTYLFYFPLLEPT--------DLTLENLLKTSGKLQVLQKLVPELIKKKHKVL 592
LR++ N +L FP +E + ++ +L++ +GKL++L +++P+L H++L
Sbjct: 813 HLRKLCNHPFL--FPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKLKATGHRIL 870
Query: 593 IFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAG 652
+F Q SM+++ ED+ + R+DGS + + R + + +F+ S LF+LSTRA G
Sbjct: 871 MFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAGG 930
Query: 653 LGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVN 712
LG+NL AD+VIIFDSDWNP D+QA DRAHRIGQ K V V RL N++E I+ A
Sbjct: 931 LGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAARY 990
Query: 713 KRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNET 772
K +++ VIQ GKF+ A +Q L + +E +E+ N+
Sbjct: 991 KLNVDEKVIQAGKFDQRSTGAERKQ--------MLEQIIQADGEEEEEEEVPDDETVNQM 1042
Query: 773 NQGQADTSKIENSDDILEESEMKELLDRSPPAYIPHETQFNHIRL 817
+ I S DI E L R P HE + ++L
Sbjct: 1043 VARSEEEFNIFQSMDIDRRREEANQLHRKPRLLEEHEIPDDILKL 1087
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 374 bits (961), Expect = e-103
Identities = 231/620 (37%), Positives = 339/620 (54%), Gaps = 90/620 (14%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK-G 246
QPS L LK YQ GL W+++LY N LNGILADEMGLGKTIQSI+L+ ++YE+ G
Sbjct: 461 QPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIG 520
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSY 306
PFL+ PLST+ NW EF ++AP + + Y + Q RH++ + N V++T+Y
Sbjct: 521 PFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQ--RHSLQHQIRVGN--FDVLLTTY 576
Query: 307 EIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKR-INTSNRLLLTGTPLQNNLGE 365
E II+D L+ + W +I+DEGHR+KN KL + T NRL+LTGTPLQNNL E
Sbjct: 577 EYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPE 636
Query: 366 LWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPF 425
LW+LLNF+LP IF+ + F WF+ N + EKL + +E +I LH +L+PF
Sbjct: 637 LWALLNFVLPKIFNSAKTFEDWFNTPFAN-TGTQEKLE--LTEEETLLIIRRLHKVLRPF 693
Query: 426 LLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAE 485
LLRRLKK V LP K E +I C ++ LQ++ Y+Q LK NA
Sbjct: 694 LLRRLKKEV-EKDLPDKVEKVIKCKLSGLQQQLYQQMLKH-----------------NAL 735
Query: 486 YIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQI 545
++G + + + I K L N ++QLR+I
Sbjct: 736 FVGAGTEGATKGGI---------------------------------KGLNNKIMQLRKI 762
Query: 546 VNSTYLF--YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDL 603
N ++F ++ P+ + L + +GK ++L +++P+ H+VL+F Q ++D+
Sbjct: 763 CNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDI 822
Query: 604 IEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSV 663
+ED+ + + R+DGS + R E + F+ S FLLSTRA GLG+NL AD+V
Sbjct: 823 MEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTV 882
Query: 664 IIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQM 723
IIFD+DWNP DLQA DRAHRIGQ V + RL +++E VI+ RA+ K ++ VIQ
Sbjct: 883 IIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQA 942
Query: 724 GKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIE 783
GKF+ K A ++ FL+ LI +ETN+ D ++++
Sbjct: 943 GKFDN-KSTAEEQEAFLRR------------------------LIESETNRDDDDKAELD 977
Query: 784 N---SDDILEESEMKELLDR 800
+ +D + ++ K L D+
Sbjct: 978 DDELNDTLARSADEKILFDK 997
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 369 bits (947), Expect = e-101
Identities = 247/734 (33%), Positives = 384/734 (51%), Gaps = 139/734 (18%)
Query: 92 KASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQ--NDE 149
KA + + + +E + D + K+ + ++Q+++++ I + + N +
Sbjct: 71 KAPKSEKEMDPEYEEKMKAD------RAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMK 124
Query: 150 DETPQKKKQKKEAIQTL-----MKRDEPKDEGSPSTSLSSSFM------QPSFLKNCQLK 198
P+ KK +K+++ + + ++ +DE S S +S + PS++K L+
Sbjct: 125 LGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLR 184
Query: 199 PYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVE 258
YQ GLNWLI+LYENG+NGILADE+ GP ++ P ST+
Sbjct: 185 DYQIRGLNWLISLYENGVNGILADEI--------------------PGPHMVLVPKSTLH 224
Query: 259 NWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEG---VIITSYEIIIRDIEL 315
NWMNEF R+ P + V+ + + A F ++ G V +TSYE++I++ +
Sbjct: 225 NWMNEFKRWVPSLRVICFVGDKDARAA------FIRDEMMPGEWDVCVTSYEMVIKEKSV 278
Query: 316 ILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILP 375
+ W++L++DE HR+KN KL ++ ++NRLLLTGTPLQNNL ELW+LLNF+LP
Sbjct: 279 FKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLP 338
Query: 376 NIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVL 435
++F+ + F+ WFD TK N ++ L+ LH +LKPFLLRR+K +V
Sbjct: 339 DVFNSADDFDSWFD-------------TK--NCLGDQKLVERLHAVLKPFLLRRIKTDV- 382
Query: 436 AGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSI 495
SLPPK+E I ++ +Q+++Y + L +KD LN+
Sbjct: 383 EKSLPPKKEIKIYLGLSKMQREWYTKIL------------MKDIDVLNSS---------- 420
Query: 496 RDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFP 555
GKM+K+ RL N+++QLR+ N YLF
Sbjct: 421 --------------------GKMDKM------------RLLNILMQLRKCCNHPYLFDGA 448
Query: 556 LLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFIS 615
P T E+++ SGK+ VL KL+ +L ++ +VLIFSQ +LD++ED+ +
Sbjct: 449 EPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEY 508
Query: 616 CRIDGSMQNNSR------------KEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSV 663
CR+DG + R +E IE F+ S +F+LSTRA GLGINL +AD V
Sbjct: 509 CRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVV 568
Query: 664 IIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQM 723
I++DSDWNPQVDLQAMDRAHRIGQ KPV V+RL DNT+E I+ RA K +L+ +VIQ
Sbjct: 569 ILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 628
Query: 724 GKF--NTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSK 781
G+ KLA E + +G++ +K+S EL+ I+ +G+ T++
Sbjct: 629 GRLIDQQSNKLAKEEMLQMIRHGATHVFASKES-------ELTDEDITTILERGEKKTAE 681
Query: 782 IENSDDILEESEMK 795
+ + ES ++
Sbjct: 682 MNERLQKMGESSLR 695
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 367 bits (941), Expect = e-101
Identities = 226/599 (37%), Positives = 332/599 (54%), Gaps = 86/599 (14%)
Query: 139 TLLERAGQNDEDETPQKKKQKKEAIQTLMK--RDEPKDEGSPSTSLSSSFMQPSFLKNCQ 196
++L++A +ND+DE K K E T R+E K++ FM + +
Sbjct: 316 SILDKA-RNDDDEYENKTKMNIEDYYTTAHGVREEIKEQ---------HFMMGGGNPSLK 365
Query: 197 LKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM-DTKGPFLIAAPLS 255
LKPYQ +GL W+++L+ N LNGILADEMGLGKTIQ+IA + ++ E+ T GPFL+ PLS
Sbjct: 366 LKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLS 425
Query: 256 TVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIEL 315
TV NW NEF ++A ++ ++ Y +G + K+ K V++T++E +IR+ L
Sbjct: 426 TVPNWQNEFDKWAANVHLIAY---KGPKETRKVFEPIIKSGK-FNVLLTTFEYVIREKAL 481
Query: 316 ILSYQWKFLIVDEGHRLKNINCKLIRELK-RINTSNRLLLTGTPLQNNLGELWSLLNFIL 374
+ +WK++I+DEGHRLKN +CKL L R RLL+TGTPLQN L ELW+LLNF+L
Sbjct: 482 LGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLL 541
Query: 375 PNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNV 434
P+IFS F +WF + ++ EK+ + E +I LH +L+PFLLRRLKK V
Sbjct: 542 PSIFSSCSTFEQWF---NAPFATTGEKVE--LTQEETMLIIRRLHKVLRPFLLRRLKKEV 596
Query: 435 LAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKS 494
LP K E+++ C ++ LQK YK KG L
Sbjct: 597 -ESELPDKMEFVVRCDMSALQKVLYKHMQKGLL--------------------------- 628
Query: 495 IRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLF-- 552
++ K + S+ + N MI LR++ N +LF
Sbjct: 629 ----LDGKTNTGSKSLRN-------------------------TMIHLRKLCNHPFLFEN 659
Query: 553 ----YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWS 608
+ ++ +L + SGKL++L +++P+L H+VL+F Q SM+ ++ED+
Sbjct: 660 VEESCRNFWDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFL 719
Query: 609 ELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDS 668
R+DGS + + R +++F+ S+ LF+LSTRA GLG+NL AD+VIIFDS
Sbjct: 720 AGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDS 779
Query: 669 DWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFN 727
DWNP D+QA DRAHRIGQ V V+RL N++E I+ A K +++ VIQ GKF+
Sbjct: 780 DWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKFD 838
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 366 bits (940), Expect = e-101
Identities = 250/756 (33%), Positives = 390/756 (51%), Gaps = 103/756 (13%)
Query: 86 EKSAGRKASSEDA---AKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLE 142
E+ KA+ E+A ++ D + + + L V+ Q Y+ + D+ ++
Sbjct: 654 ERLQALKANDEEAYIKLLDQTKDTRITHLLRQTNAFLDSLTRAVKDQQKYTKEMIDSHIK 713
Query: 143 RAGQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFM----------QPSFL 192
A + +D + K +DE D+ ++++ + QPS L
Sbjct: 714 EASEEVDDLSMVPKM-----------KDEEYDDDDDNSNVDYYNVAHRIKEDIKKQPSIL 762
Query: 193 KNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM-DTKGPFLIA 251
LK YQ +GL W+++L+ N LNGILADEMGLGKTIQ+I+LL ++YEM + +GP+L+
Sbjct: 763 VGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVI 822
Query: 252 APLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE-GVIITSYEIII 310
PLST+ NW +EFA++AP + + + S + R A K GE V++T++E II
Sbjct: 823 VPLSTLSNWSSEFAKWAPTLRTISFKGSPNE--RKAKQAKI---RAGEFDVVLTTFEYII 877
Query: 311 RDIELILSYQWKFLIVDEGHRLKNINCKLIRELK-RINTSNRLLLTGTPLQNNLGELWSL 369
++ L+ +W +I+DEGHR+KN KL L + RL+LTGTPLQNNL ELW+L
Sbjct: 878 KERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWAL 937
Query: 370 LNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRR 429
LNF+LP IF+ + F++WF+ N +K+ +++E +I LH +L+PFLLRR
Sbjct: 938 LNFVLPKIFNSVKSFDEWFNTPFAN-TGGQDKIE--LSEEETLLVIRRLHKVLRPFLLRR 994
Query: 430 LKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGT 489
LKK+V LP K E ++ C ++ LQ+ Y+Q LK +IG
Sbjct: 995 LKKDV-EKELPDKVEKVVKCKMSALQQIMYQQMLK-----------------YRRLFIGD 1036
Query: 490 VSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNST 549
+NK KM L + N ++QL++I N
Sbjct: 1037 QNNK-----------------------KMVGL-----------RGFNNQIMQLKKICNHP 1062
Query: 550 YLF--YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW 607
++F + PT T +++ + +GK ++L +++P+L H+VLIF Q ++D++ED+
Sbjct: 1063 FVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDF 1122
Query: 608 SELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFD 667
N R+DG +++ R E + F+ S+ F+LSTRA GLG+NL AD+VIIFD
Sbjct: 1123 LRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFD 1182
Query: 668 SDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFN 727
+DWNP DLQA DRAHRIGQ V + RL N++E VI+ RA K ++ VIQ GKF+
Sbjct: 1183 TDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFD 1242
Query: 728 TLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKEL-----SQLLISNETNQG-----QA 777
E + + K+ + E +EL +++L N+
Sbjct: 1243 NKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDE 1302
Query: 778 DTSKIEN----SDDILEESEMKELLDRSPPAYIPHE 809
D SK E +LE+SE+ ++ R A + E
Sbjct: 1303 DRSKKEEELGVKSRLLEKSELPDIYSRDIGAELKRE 1338
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 364 bits (934), Expect = e-100
Identities = 223/631 (35%), Positives = 345/631 (54%), Gaps = 88/631 (13%)
Query: 109 ENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQNDEDETPQKKKQKKEAIQTLMK 168
E +S + K+ + +Q+++ +S + A + + KK + K
Sbjct: 6 EPESSDAADSFKRFERLLQKTENFSHLATG-----APVDTKKRGRPSKKNGIDGDHRHRK 60
Query: 169 RDEPKDEGSPSTSLSSSFM-----QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADE 223
++ +DE + ++ S + P +++N +++ YQ GLNWL +L N +NGILADE
Sbjct: 61 TEQEEDEEMVADAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADE 120
Query: 224 MGLGKTIQSIALLAFIYEMDTKG-PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQ 282
MGLGKT+Q+I+++ ++ K P L+ P ST++NW NEF ++ P I + E
Sbjct: 121 MGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDE-- 178
Query: 283 AARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRE 342
AAR+ ++ K + V T+YE++++ + W+++I+DE HR+KN KL
Sbjct: 179 AARNQVLRDVILPQKFD-VCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSET 237
Query: 343 LKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKL 402
++ +N+ NRLL+TGTPLQNNL ELW+LLNF+LP+IF+ + F+ WF
Sbjct: 238 VRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFS------------- 284
Query: 403 TKIINDELEKN--LISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYK 460
ND + N L+ LH +L+PFLLRR+K +V SL PK+E + ++ +Q+++Y
Sbjct: 285 ----NDAMSGNTDLVQRLHKVLQPFLLRRIKSDV-EKSLLPKKEVKVYVGLSKMQREWYT 339
Query: 461 QALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEK 520
+ L +KD +N GK+EK
Sbjct: 340 KVL------------MKDIDIIN------------------------------GAGKVEK 357
Query: 521 LYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKL 580
RL N+++ LR+ VN YLF P T ++L+ SGK+ VL KL
Sbjct: 358 ------------ARLMNILMHLRKCVNHPYLFDGAEPGPPFTTDQHLVDNSGKMVVLDKL 405
Query: 581 VPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSK 640
+ + ++ +VLIFSQF MLDL+ED+ ++ CR+DGS + R IE ++ SK
Sbjct: 406 LMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSK 465
Query: 641 ANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDN 700
+F+L+TRA GLGINL AD VII+DSDWNPQ DLQAMDRAHRIGQ K V V+RL +N
Sbjct: 466 KFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITEN 525
Query: 701 TIENVIMTRAVNKRKLEKLVIQMGKFNTLKK 731
T++ I+ +A K +L+ +VIQ G+ + +K
Sbjct: 526 TVDERIIEKAEAKLRLDNIVIQQGRMSEAQK 556
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 361 bits (927), Expect = 2e-99
Identities = 235/655 (35%), Positives = 351/655 (52%), Gaps = 85/655 (12%)
Query: 101 NEDSDENFENDSHTISLKIKKLQEFV---QQSQVYSSIIADTLLERAGQNDEDE-TPQKK 156
+E+SD ++E + ++ +E + S+ S A ++E A Q+ +DE + Q
Sbjct: 631 SEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYS 690
Query: 157 KQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGL 216
+ ++ T+ + E Q + L N LK YQ +GL W+++LY N L
Sbjct: 691 ARGSQSYYTVAHAISERVE-----------KQSALLINGTLKHYQLQGLEWMVSLYNNNL 739
Query: 217 NGILADEMGLGKTIQSIALLAFIYE-MDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLK 275
NGILADEMGLGKTIQ+IAL+ ++ E GP+LI PLST+ NW EF ++AP + +
Sbjct: 740 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 799
Query: 276 YYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNI 335
Y +G A + ++ K V++T+YE II+D ++ +WK++IVDEGHR+KN
Sbjct: 800 Y---KGTPAMRRSLVPQLRSGK-FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNH 855
Query: 336 NCKLIRELK-RINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLN 394
+CKL + L R+LLTGTPLQN L ELW+LLNF+LP IF F +WF +
Sbjct: 856 HCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF---NAP 912
Query: 395 LESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPL 454
+ E++ +N+E +I LH +L+PFLLRRLKK V LP K EY+I C ++ L
Sbjct: 913 FAMTGERVD--LNEEETILIIRRLHKVLRPFLLRRLKKEV-ESQLPEKVEYVIKCDMSAL 969
Query: 455 QKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDN 514
QK Y+ +Q + I L D +
Sbjct: 970 QKILYRH---------MQAKGI--------------------------LLTDGSEKDKKG 994
Query: 515 IGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLF-YFPLLEPTDLTLEN------- 566
G + L N ++QLR+I N Y+F + L N
Sbjct: 995 KGGAKTL--------------MNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAE 1040
Query: 567 LLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
L + SGK ++L +++P+L H+VL+F Q S++ ++ED+ NF+ R+DG+ ++
Sbjct: 1041 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1100
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R +++F++ GS+ +FLLSTRA GLG+NL AAD+V+IFDSDWNP DLQA DRAHRIG
Sbjct: 1101 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1160
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLK 741
Q V V RL N++E I+ A K +++ VIQ G F+ K + + FL+
Sbjct: 1161 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQ-KSSSHERRAFLQ 1214
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 361 bits (927), Expect = 2e-99
Identities = 235/655 (35%), Positives = 351/655 (52%), Gaps = 85/655 (12%)
Query: 101 NEDSDENFENDSHTISLKIKKLQEFV---QQSQVYSSIIADTLLERAGQNDEDE-TPQKK 156
+E+SD ++E + ++ +E + S+ S A ++E A Q+ +DE + Q
Sbjct: 631 SEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYS 690
Query: 157 KQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGL 216
+ ++ T+ + E Q + L N LK YQ +GL W+++LY N L
Sbjct: 691 ARGSQSYYTVAHAISERVE-----------KQSALLINGTLKHYQLQGLEWMVSLYNNNL 739
Query: 217 NGILADEMGLGKTIQSIALLAFIYE-MDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLK 275
NGILADEMGLGKTIQ+IAL+ ++ E GP+LI PLST+ NW EF ++AP + +
Sbjct: 740 NGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKIS 799
Query: 276 YYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNI 335
Y +G A + ++ K V++T+YE II+D ++ +WK++IVDEGHR+KN
Sbjct: 800 Y---KGTPAMRRSLVPQLRSGK-FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNH 855
Query: 336 NCKLIRELK-RINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLN 394
+CKL + L R+LLTGTPLQN L ELW+LLNF+LP IF F +WF +
Sbjct: 856 HCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWF---NAP 912
Query: 395 LESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPL 454
+ E++ +N+E +I LH +L+PFLLRRLKK V LP K EY+I C ++ L
Sbjct: 913 FAMTGERVD--LNEEETILIIRRLHKVLRPFLLRRLKKEV-ESQLPEKVEYVIKCDMSAL 969
Query: 455 QKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDN 514
QK Y+ +Q + I L D +
Sbjct: 970 QKILYRH---------MQAKGI--------------------------LLTDGSEKDKKG 994
Query: 515 IGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLF-YFPLLEPTDLTLEN------- 566
G + L N ++QLR+I N Y+F + L N
Sbjct: 995 KGGAKTL--------------MNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAE 1040
Query: 567 LLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
L + SGK ++L +++P+L H+VL+F Q S++ ++ED+ NF+ R+DG+ ++
Sbjct: 1041 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1100
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R +++F++ GS+ +FLLSTRA GLG+NL AAD+V+IFDSDWNP DLQA DRAHRIG
Sbjct: 1101 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1160
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLK 741
Q V V RL N++E I+ A K +++ VIQ G F+ K + + FL+
Sbjct: 1161 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQ-KSSSHERRAFLQ 1214
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 357 bits (917), Expect = 3e-98
Identities = 242/670 (36%), Positives = 351/670 (52%), Gaps = 90/670 (13%)
Query: 87 KSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQ 146
+S ++ SE+ + E+ ++ T+ ++ KK V S + A ++E A Q
Sbjct: 654 RSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV-SEVDARHIIENAKQ 712
Query: 147 NDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLN 206
+ +DE + + R Q + + N LK YQ +GL
Sbjct: 713 DVDDEY---------GVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLE 763
Query: 207 WLITLYENGLNGILADEMGLGKTIQSIALLAFIYE-MDTKGPFLIAAPLSTVENWMNEFA 265
WL++LY N LNGILADEMGLGKTIQ+IAL+ ++ E GPFLI PLST+ NW EF
Sbjct: 764 WLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFD 823
Query: 266 RFAPDIPVLKYYNSEGQAARHAMM-----GKFFKNNKGEGVIITSYEIIIRDIELILSYQ 320
++AP + + Y S AAR A + GKF V++T+YE II+D ++ +
Sbjct: 824 KWAPSVVKVSYKGS--PAARRAFVPQLRSGKF-------NVLLTTYEYIIKDKHILAKIR 874
Query: 321 WKFLIVDEGHRLKNINCKLIRELK-RINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFS 379
WK++IVDEGHR+KN +CKL + L RLLLTGTPLQN L ELW+LLNF+LP IF
Sbjct: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
Query: 380 DFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSL 439
F +WF + + EK+ +N+E +I LH +L+PFLLRRLKK V A L
Sbjct: 935 SCSTFEQWF---NAPFAMTGEKVD--LNEEETILIIRRLHKVLRPFLLRRLKKEVEA-QL 988
Query: 440 PPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFI 499
P K EY+I C ++ LQ+ Y+ +Q + +
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRH---------MQAKGV----------------------- 1016
Query: 500 EWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLF------Y 553
L D + G + L N ++QLR+I N Y+F +
Sbjct: 1017 ---LLTDGSEKDKKGKGGTKTL--------------MNTIMQLRKICNHPYMFQHIEESF 1059
Query: 554 FPLLEPTDLTLE--NLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELN 611
L T ++ +L + SGK ++L +++P+L HKVL+F Q S++ ++ED+
Sbjct: 1060 SEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYR 1119
Query: 612 NFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWN 671
F R+DG+ + R ++ F++ GS+ +FLLSTRA GLG+NL +AD+VIIFDSDWN
Sbjct: 1120 GFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWN 1179
Query: 672 PQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKK 731
P DLQA DRAHRIGQ V V RL N++E I+ A K +++ VIQ G F+ K
Sbjct: 1180 PHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQ-KS 1238
Query: 732 LAFNEQTFLK 741
+ + FL+
Sbjct: 1239 SSHERRAFLQ 1248
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 354 bits (908), Expect = 4e-97
Identities = 232/615 (37%), Positives = 331/615 (53%), Gaps = 85/615 (13%)
Query: 143 RAGQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFM-----QPSFLKNCQL 197
+A NDED K K E DE + E S++ + Q S + N L
Sbjct: 721 QATGNDEDAKDLITKAKVED-------DEYRTEEQTYYSIAHTIHEKVVEQASIMVNGTL 773
Query: 198 KPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK---GPFLIAAPL 254
K YQ +GL WL++LY N LNGILADEMGLGKTIQ+I+L+ ++ MD K GP+LI PL
Sbjct: 774 KEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYL--MDRKKVMGPYLIIVPL 831
Query: 255 STVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIE 314
ST+ NW+ EF ++AP + V+ Y +G ++ + K V++T+YE +I+D
Sbjct: 832 STLPNWVLEFEKWAPAVGVVSY---KGSPQGRRLLQNQMRATK-FNVLLTTYEYVIKDKA 887
Query: 315 LILSYQWKFLIVDEGHRLKNINCKLIRELK-RINTSNRLLLTGTPLQNNLGELWSLLNFI 373
++ QWK++I+DEGHR+KN +CKL + L RLLLTGTPLQN L ELW+LLNF+
Sbjct: 888 VLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFL 947
Query: 374 LPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKN 433
LP+IF F +WF + ++ EK+ +N+E +I LH +L+PFLLRRLKK
Sbjct: 948 LPSIFKSCSTFEQWF---NAPFATTGEKVE--LNEEETILIIRRLHKVLRPFLLRRLKKE 1002
Query: 434 VLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNK 493
V LP K EYII C ++ LQ+ YK +Q + +
Sbjct: 1003 V-EHQLPDKVEYIIKCDMSALQRVLYKH---------MQSKGV----------------- 1035
Query: 494 SIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFY 553
L D + G + L N ++QLR++ N ++F
Sbjct: 1036 ---------LLTDGSEKGKHGKGGAKAL--------------MNTIVQLRKLCNHPFMFQ 1072
Query: 554 FPLLEPTD-------LTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIED 606
+ D ++ +L + SGK ++L +++P+L H+VL+F Q + +IED
Sbjct: 1073 HIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIED 1132
Query: 607 WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIF 666
+ F R+DG+ + R E + +F+ KGS +FLLSTRA GLG+NL AD+V+IF
Sbjct: 1133 YLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIF 1192
Query: 667 DSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKF 726
DSDWNP DLQA DRAHRIGQ V V RL N++E I+ A K +++ VIQ G F
Sbjct: 1193 DSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMF 1252
Query: 727 NTLKKLAFNEQTFLK 741
+ K Q FL+
Sbjct: 1253 DQ-KSTGSERQQFLQ 1266
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 350 bits (897), Expect = 7e-96
Identities = 219/551 (39%), Positives = 312/551 (55%), Gaps = 85/551 (15%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYE-MDTKG 246
QPS L+ +L+ YQ EGL W+++L+ N LNGILADEMGLGKTIQ+I+L+A++ E G
Sbjct: 424 QPSLLEGGELRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVPG 483
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYN--SEGQAARHAMMGKFFKNNKGEGVIIT 304
P+LI AP + + NW+NEFA + P I Y E +A R + G+ N V+IT
Sbjct: 484 PYLIVAPKAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIREKIAGEGKFN-----VLIT 538
Query: 305 SYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRE-LKRINTSNRLLLTGTPLQNNL 363
Y++I+RD + +W ++IVDEGHRLKN L + L RLLLTGTP+QN+L
Sbjct: 539 HYDLIMRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSL 598
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFD--FSDLNLESSSEKLTKIINDELEKNLISNLHTI 421
ELWSLLNF+LP+IF+ + F +WF+ F+D S + DE E +I LH +
Sbjct: 599 QELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVS--------LTDEEELLIIHRLHHV 650
Query: 422 LKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFT 481
++PF+LRR KK+ + LP K + I+ C ++ QK YYKQ + D
Sbjct: 651 IRPFILRR-KKDEVEKFLPGKTQVILKCDMSAWQKVYYKQ--------------VTDMGR 695
Query: 482 LNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQ 541
+ + T S KS K L N +Q
Sbjct: 696 VGLQ---TGSGKS---------------------------------KSLQNLTMQ----- 714
Query: 542 LRQIVNSTYLF----YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQF 597
LR+ N YLF Y +P +++ SGK ++L +L+P+L K H++L+FSQ
Sbjct: 715 LRKCCNHPYLFVGGDYNMWKKP------EIVRASGKFELLDRLLPKLRKAGHRILLFSQM 768
Query: 598 VSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINL 657
++D++E + LN++ R+DG+ + + R +++F++ S +FLLSTRA GLG+NL
Sbjct: 769 TRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNL 828
Query: 658 TAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLE 717
AD+VIIFDSDWNPQ+D QA DRAHRIGQ K V V+ L ++E VI+ RA K ++
Sbjct: 829 QTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGID 888
Query: 718 KLVIQMGKFNT 728
VIQ G FNT
Sbjct: 889 AKVIQAGLFNT 899
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 341 bits (874), Expect = 3e-93
Identities = 234/677 (34%), Positives = 351/677 (51%), Gaps = 97/677 (14%)
Query: 101 NEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQNDEDETPQKKKQ-- 158
+E DE F D +++ ++ +F + + + L++ ED T ++++
Sbjct: 301 SEIEDELFNPDY----VEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWERRQDID 356
Query: 159 --KKEAIQTLMKRDEPKD--EGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYEN 214
K E + LM R+ + E P+ S + N +L+ YQ EG+NWL+ + N
Sbjct: 357 QAKIEEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYN 416
Query: 215 GLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVL 274
N ILADEMGLGKTIQSI L IY GPFL+ APLST+ NW EF R ++ V+
Sbjct: 417 MRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREF-RTWTELNVV 475
Query: 275 KYYNSEGQAARHAMMGKFFKNNKGEGV--------IITSYEIIIRDIELILSYQWKFLIV 326
Y+ S+ + +FK+ +G + IIT++E+I+ D + + W+ +++
Sbjct: 476 VYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVI 535
Query: 327 DEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNK 386
DE HRLKN NCKL+ LK ++ +++LLTGTPLQN + EL+SLL+F+ P+ F F +
Sbjct: 536 DEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQ 595
Query: 387 WFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYI 446
+F DL E +K L ILKP +LRRLK++V +L PK E I
Sbjct: 596 --EFGDLKTEEQVQK----------------LQAILKPMMLRRLKEDV-EKNLAPKEETI 636
Query: 447 ITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSAD 506
I +T +QKKYY+ L+ N FT ++
Sbjct: 637 IEVELTNIQKKYYRAILEKN-------------FTFLSK------------------GGG 665
Query: 507 SQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLEN 566
++PN + M +L H L+N + ++ + ++ N+ E D L+
Sbjct: 666 QANVPN-LLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA---------ESPDFQLQA 715
Query: 567 LLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
+++ +GKL ++ KL+P+L H+VLIFSQ V LD++ED+ + RIDG ++ N
Sbjct: 716 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 775
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R+ I+ FSK S +FLL TRA GLGINLTAAD+ IIFDSDWNPQ DLQA R HRIG
Sbjct: 776 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 835
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSS 746
Q+K V +YRL N+ E + +A K L+K V+Q M+G
Sbjct: 836 QSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ------------------SMSGRE 877
Query: 747 LATTTKQSANKELVKEL 763
AT Q +K+ +++L
Sbjct: 878 NATNGVQQLSKKEIEDL 894
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 340 bits (872), Expect = 5e-93
Identities = 233/616 (37%), Positives = 330/616 (52%), Gaps = 98/616 (15%)
Query: 189 PSFLKNC-----QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM- 242
P FLK +L+ YQ EGLNW++ + G + ILADEMGLGKTIQSI+LLA ++
Sbjct: 392 PDFLKTDGESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRY 451
Query: 243 DTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGV- 301
D GP+L+ PLST+ W EFA++AP++ ++ Y F K +
Sbjct: 452 DLAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKIN 511
Query: 302 -IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQ 360
I+T+YEI+++D + S W L+VDE HRLKN L + L + +++LL+TGTPLQ
Sbjct: 512 AILTTYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQ 571
Query: 361 NNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHT 420
N+L ELW+LL+FI+P E F+ W +F + ES+ + IS LH
Sbjct: 572 NSLKELWALLHFIMP------EKFDCWEEFETAHNESNHKG-------------ISALHK 612
Query: 421 ILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQ--KQAIKD 478
L+PFLLRR+KK+V SLPPK E I+ +T QK++YK L N ++ + K +I
Sbjct: 613 KLEPFLLRRVKKDV-EKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSING 671
Query: 479 FFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNM 538
F L E ++ S + + YD HI+ + +
Sbjct: 672 FVNLVMELKKCCNHAS-----------------------LTRQYD-HIYDDAQGR----- 702
Query: 539 MIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFV 598
L+ LLK+SGKL +L KL+ L K H+VLIFSQ V
Sbjct: 703 -------------------------LQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMV 737
Query: 599 SMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLT 658
MLD+++++ +L F S R+DGSM+ + RK+ ++ ++ GS FLLSTRA GLGINL
Sbjct: 738 MMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLA 797
Query: 659 AADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEK 718
AD+VIIFDSDWNPQ DLQAM RAHRIGQTK V +YRL ++E I+ RA K L+
Sbjct: 798 TADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDH 857
Query: 719 LVIQ----MGKFNTLK------KLAFNEQ---TFLKMNGSSLATTTKQSANKELVKELSQ 765
LVIQ GK K + F++Q LK L K+ +E ++ +
Sbjct: 858 LVIQRMDTTGKTVLSKNATASGSVPFDKQELSAILKFGAVEL-FKEKEGEEQEPEVDIDR 916
Query: 766 LLISNETNQGQADTSK 781
+L+ ET + + + K
Sbjct: 917 ILMGAETREAEEEVMK 932
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 336 bits (861), Expect = 1e-91
Identities = 219/591 (37%), Positives = 317/591 (53%), Gaps = 75/591 (12%)
Query: 196 QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLS 255
QL+ YQ EG+NWL+ + N N ILADEMGLGKTIQSIA L +Y + GPFL+ APLS
Sbjct: 182 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLS 241
Query: 256 TVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE--------GVIITSYE 307
T+ NW EF + ++ + Y+ S + K+++G +IT++E
Sbjct: 242 TITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 300
Query: 308 IIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELW 367
+I+ D + +W+ +I+DE HRLKN NCKL+ LK ++ +++LLTGTPLQN + EL+
Sbjct: 301 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 360
Query: 368 SLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLL 427
SLL+F+ P+ F F K DF DL E +K L ILKP +L
Sbjct: 361 SLLHFLEPSQFPSESEFLK--DFGDLKTEEQVQK----------------LQAILKPMML 402
Query: 428 RRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYI 487
RRLK++V +L PK+E II +T +QKKYY+ L+ N
Sbjct: 403 RRLKEDV-EKNLAPKQETIIEVELTNIQKKYYRAILEKN--------------------- 440
Query: 488 GTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVN 547
F A ++PN + M +L H L+N + ++ + R+ +
Sbjct: 441 ----------FSFLSKGAGHTNMPN-LLNTMMELRKCCNHPYLINGAEEKILTEFREACH 489
Query: 548 STYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW 607
+ P D L+ +++++GKL ++ KL+P+L HKVLIFSQ V LD++ED+
Sbjct: 490 ---------IIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDY 540
Query: 608 SELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFD 667
++ RIDG ++ N R+ I+ FSK S +FLL TRA GLGINLTAAD+ IIFD
Sbjct: 541 LIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 600
Query: 668 SDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQM---- 723
SDWNPQ DLQA R HRIGQ+K V VYRL N+ E + +A K L+K V+Q
Sbjct: 601 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 660
Query: 724 -GKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKE-LSQLLISNET 772
G +++ + E L G+ A + + +E + Q+L+ T
Sbjct: 661 DGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTT 711
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 332 bits (852), Expect = 1e-90
Identities = 240/678 (35%), Positives = 340/678 (49%), Gaps = 122/678 (17%)
Query: 149 EDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNC--QLKPYQKEGLN 206
E+ P KK +K + L K + P + + ++ QP +L L PYQ EGLN
Sbjct: 681 EEGRPGKKLKKVK----LRKLERPPETPTVDPTVKYE-RQPEYLDATGGTLHPYQMEGLN 735
Query: 207 WLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLSTVENWMNEFA 265
WL + G + ILADEMGLGKT+Q+ L +Y E +KGPFL++APLST+ NW EF
Sbjct: 736 WLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFE 795
Query: 266 RFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEG----------------VIITSYEII 309
+APD+ V+ Y + A F++N G V++TSYE+I
Sbjct: 796 MWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELI 855
Query: 310 IRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSL 369
D+ ++ S W LIVDE HRLKN K R L + ++LLLTGTPLQNNL EL+ L
Sbjct: 856 TIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHL 915
Query: 370 LNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRR 429
LNF+ P F + E F + +F+D+ E D+++K LH +L P +LRR
Sbjct: 916 LNFLTPERFHNLEGFLE--EFADIAKE-----------DQIKK-----LHDMLGPHMLRR 957
Query: 430 LKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGT 489
LK +V ++P K E I+ ++P+QKKYYK L N F LNA G
Sbjct: 958 LKADVFK-NMPSKTELIVRVELSPMQKKYYKYILTRN------------FEALNARGGGN 1004
Query: 490 VSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNST 549
L N+++ L++ N
Sbjct: 1005 ------------------------------------------QVSLLNVVMDLKKCCNHP 1022
Query: 550 YLFYFPLLEPTDLTL-----ENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLI 604
YLF +E + L++ SGKL +LQK++ L + H+VLIFSQ MLDL+
Sbjct: 1023 YLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLL 1082
Query: 605 EDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVI 664
ED+ E + RIDG + N R+E I+ F+ G++ FLLSTRA GLGINL AD+VI
Sbjct: 1083 EDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1142
Query: 665 IFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMG 724
I+DSDWNP D+QA RAHRIGQ K V++YR ++E I A K L LV++ G
Sbjct: 1143 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPG 1202
Query: 725 KFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIEN 784
GS + +KQ + +++K ++ L +E G D + E+
Sbjct: 1203 L------------------GSKTGSMSKQELD-DILKFGTEELFKDEATDGGGDNKEGED 1243
Query: 785 SDDI-LEESEMKELLDRS 801
S I ++ ++ LLDR+
Sbjct: 1244 SSVIHYDDKAIERLLDRN 1261
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 330 bits (847), Expect = 4e-90
Identities = 235/645 (36%), Positives = 339/645 (52%), Gaps = 78/645 (12%)
Query: 142 ERAGQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNC-QLKPY 200
E + +ED P K K+ E++Q L E K P++ + KN QL+ Y
Sbjct: 407 ESTWELEEDVDPAKVKEF-ESLQVL---PEIKHVERPASDSWQKLEKSREYKNSNQLREY 462
Query: 201 QKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENW 260
Q EG+NWL+ + N N ILADEMGLGKTIQSI L+ I+ GPFLI APLST+ NW
Sbjct: 463 QLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNW 522
Query: 261 MNEFARFAPDIPVLKYYNSE---GQAARHAMMGKFFKNNKGEGV-----IITSYEIIIRD 312
EF + ++ + Y+ S+ ++ M+ + + N GV +IT++E+I+ D
Sbjct: 523 EREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILAD 581
Query: 313 IELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNF 372
+ W +I+DE HRLKN NCKL+ LK + +++LLTGTPLQN++ EL+SLLNF
Sbjct: 582 CPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 641
Query: 373 ILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKK 432
+ P+ F F + +F DL E +KL +ILKP +LRRLK
Sbjct: 642 LEPSQFPSETAFLE--EFGDLKTEEQVKKL----------------QSILKPMMLRRLKD 683
Query: 433 NVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSN 492
+V +L PK+E II +T +QKKYY+ L+ N F T
Sbjct: 684 DV-EKNLAPKQETIIEVELTNIQKKYYRAILEKNF----------SFLT----------- 721
Query: 493 KSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLF 552
A+ ++PN I M +L H L+N + ++ R+ +
Sbjct: 722 ----------KGANQHNMPN-LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP---- 766
Query: 553 YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNN 612
+ D L+ +++ +GKL ++ KL+P+LI HKVLIFSQ V LD++ED+
Sbjct: 767 -----DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRR 821
Query: 613 FISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNP 672
+ RIDG ++ N R+ I+ F K S +FLL TRA GLGINLTAAD+ IIFDSDWNP
Sbjct: 822 YTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNP 881
Query: 673 QVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQ----MGKFNT 728
Q DLQA R HRIGQ+K V VYRL N+ E + +A K L+K V+Q G N
Sbjct: 882 QNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNG 941
Query: 729 LKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETN 773
+++L+ E L G+ A ++ + +E ++ T+
Sbjct: 942 VQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTH 986
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 330 bits (845), Expect = 7e-90
Identities = 215/621 (34%), Positives = 323/621 (51%), Gaps = 94/621 (15%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQ-----SIALLAFI-YE 241
QPS L +L+ YQ GL WL++LY N LNGILADEMGLGKT+Q ++ +++ I Y
Sbjct: 784 QPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQMGLGKTVQVISLICYL 843
Query: 242 MDTK---GPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKN--- 295
M+TK GPFL+ P S + W +E +AP I + Y + + K FK
Sbjct: 844 METKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERR------KLFKEQIV 897
Query: 296 NKGEGVIITSYEIIIR--DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLL 353
++ V++T+YE ++ D + W ++I+DEGHR+KN +CKL +LK +S+RLL
Sbjct: 898 HQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLL 957
Query: 354 LTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKN 413
LTGTPLQNNL ELW+LLNF+LPNIF+ E F++WF + +S+ E + ++++E
Sbjct: 958 LTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF---NKPFQSNGES-SALLSEEENLL 1013
Query: 414 LISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQK 473
+I+ LH +L+PF+LRRLK V LP K E +I C + QK K+
Sbjct: 1014 IINRLHQVLRPFVLRRLKHKV-ENELPEKIERLIRCEASAYQKLLMKRV----------- 1061
Query: 474 QAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNK 533
DN+G + +H
Sbjct: 1062 --------------------------------------EDNLGSIGNAKSRAVH------ 1077
Query: 534 RLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLI 593
N +++LR I N YL L + L +++ GKL++L +++P+L H+VL
Sbjct: 1078 ---NSVMELRNICNHPYL---SQLHSEEHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLF 1131
Query: 594 FSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGL 653
FS +LD++ED+ L + R+DG R I+ F+K GS +FLLS RA G+
Sbjct: 1132 FSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGV 1191
Query: 654 GINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNK 713
G+NL AAD+VI+FD+DWNPQVDLQA RAHRIGQ K V+V R N++E + A +K
Sbjct: 1192 GVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHK 1251
Query: 714 RKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETN 773
+ I G F+ T + L + ++S +E L +++
Sbjct: 1252 LGVANQSITAG--------FFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALNDLIA 1303
Query: 774 QGQADTSKIENSDDILEESEM 794
+ +++ E+ D +E+EM
Sbjct: 1304 RRESEIDIFESIDKQRKENEM 1324
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 329 bits (844), Expect = 9e-90
Identities = 241/689 (34%), Positives = 344/689 (48%), Gaps = 120/689 (17%)
Query: 148 DEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFM----QPSFLKNC--QLKPYQ 201
++ P+K K+KK+ +Q +G PS+ + + QP F+ L YQ
Sbjct: 690 EDPAQPRKYKKKKKELQ---------GDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQ 740
Query: 202 KEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLSTVENW 260
EGLNWL + G + ILADEMGLGKTIQ+I L +Y E TKGPFL++APLST+ NW
Sbjct: 741 LEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINW 800
Query: 261 MNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEG----------------VIIT 304
EF +AP V+ Y + A F++N +G V++T
Sbjct: 801 EREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLT 860
Query: 305 SYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLG 364
SYE+I D + S +W L+VDE HRLKN K R L ++LLLTGTPLQNNL
Sbjct: 861 SYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLE 920
Query: 365 ELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKP 424
EL+ LLNF+ P F++ E F + +F+D++ E D+++K LH +L P
Sbjct: 921 ELFHLLNFLTPERFNNLEGFLE--EFADISKE-----------DQIKK-----LHDLLGP 962
Query: 425 FLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNA 484
+LRRLK +V ++P K E I+ ++P+QKKYYK L N F LN+
Sbjct: 963 HMLRRLKADVFK-NMPAKTELIVRVELSPMQKKYYKYILTRN------------FEALNS 1009
Query: 485 EYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQ 544
G LLN +M+ L++
Sbjct: 1010 RGGGN-------------------------------------QVSLLN-----IMMDLKK 1027
Query: 545 IVNSTYLFYFPLLEPTDLTL-----ENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVS 599
N YLF +E L L+K+SGKL +LQK++ +L ++ H+VLIFSQ
Sbjct: 1028 CCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1087
Query: 600 MLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTA 659
MLDL+ED+ + + RIDG + R+E I+ F+ G++ FLLSTRA GLGINL
Sbjct: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1147
Query: 660 ADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKL 719
AD+VIIFDSDWNP D+QA RAHRIGQ V++YR ++E I A K L L
Sbjct: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207
Query: 720 VIQMGKFNTLKKLAFNE-QTFLKMNGSSLATTTKQSANKELVKELSQLLISNET------ 772
V++ G + ++ E LK L + NKE ++ S + NE
Sbjct: 1208 VVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE--EDSSVIHYDNEAIARLLD 1265
Query: 773 -NQGQADTSKIENSDDILEESEMKELLDR 800
NQ + + ++N ++ L ++ + + R
Sbjct: 1266 RNQDATEDTDVQNMNEYLSSFKVAQYVVR 1294
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 329 bits (844), Expect = 9e-90
Identities = 241/683 (35%), Positives = 338/683 (49%), Gaps = 138/683 (20%)
Query: 149 EDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNC--QLKPYQKEGLN 206
EDE ++K K+E I L K + +QP F+ L PYQ EG+N
Sbjct: 583 EDEVTSRRK-KREKIDILKKYE----------------VQPDFISETGGNLHPYQLEGIN 625
Query: 207 WLITLYENGLNGILADEMGLGKTIQSIALL-AFIYEMDTKGPFLIAAPLSTVENWMNEFA 265
WL + NG + ILADEMGLGKT+QS+ L + E TKGPFLIAAPLST+ NW E
Sbjct: 626 WLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAE 685
Query: 266 RFAPDIPVLKYYNS----------EGQAARHAMMG-------KFFKNNKGEGVIITSYEI 308
+ PD V+ Y E A+ G K +N K V++TSYE
Sbjct: 686 LWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFH-VLLTSYEC 744
Query: 309 IIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWS 368
I D ++ S W L+VDE HRLKN + L+ N R+LLTGTPLQNNL EL+
Sbjct: 745 INMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFH 804
Query: 369 LLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLR 428
LLNF+ P+ F+ E F +FS+++ E D++EK LH +L P +LR
Sbjct: 805 LLNFLAPDRFNQLESFTA--EFSEISKE-----------DQIEK-----LHNLLGPHMLR 846
Query: 429 RLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIG 488
RLK +VL G +P K+E I+ ++ +QKKYYK L N F LN + G
Sbjct: 847 RLKADVLTG-MPSKQELIVRVELSAMQKKYYKNILTRN------------FDALNVKNGG 893
Query: 489 TVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNS 548
T L N++++L++ N
Sbjct: 894 T------------------------------------------QMSLINIIMELKKCCNH 911
Query: 549 TYLFYFPLLEPTDLTL-----ENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDL 603
YLF LE L L+K +GK +LQK++ +L H+VLIFSQ MLD+
Sbjct: 912 PYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDI 971
Query: 604 IEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSV 663
+ED+ ++ + RIDGS+ R++ I+ ++ G+K +FLLSTRA GLGINL AD+V
Sbjct: 972 LEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTV 1031
Query: 664 IIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQM 723
II+DSDWNP D+QA RAHR+GQ V++YR ++E I + A K L LV++
Sbjct: 1032 IIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRA 1091
Query: 724 GKFNTLKKLAFNEQTFLKMNGSSLATTTKQS----ANKELVKELSQLLISNETNQGQADT 779
G +G S++ T +EL KE + E G+ +
Sbjct: 1092 G--------------LGAKDGKSMSKTELDDVLRWGTEELFKEEEAPV---EGADGEGTS 1134
Query: 780 SKIENSDDIL-EESEMKELLDRS 801
SK N +I+ +++ + LLDR+
Sbjct: 1135 SKKPNEQEIVWDDAAVDFLLDRN 1157
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 326 bits (836), Expect = 8e-89
Identities = 231/656 (35%), Positives = 341/656 (51%), Gaps = 112/656 (17%)
Query: 188 QPSFL--KNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM-DT 244
QP++L +N +L+ YQ EGLNWL + + ILADEMGLGKTIQ+I+ L++++
Sbjct: 473 QPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQL 532
Query: 245 KGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYN---SEGQAARHAMMGKFFKNNKGEGV 301
GPFLI PLST+ +W EF +AP+I V+ Y S + + K K
Sbjct: 533 YGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA- 591
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
+IT+YEI+++D ++ S W FL VDE HRLKN + L + L +++RLL+TGTPLQN
Sbjct: 592 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN 651
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTI 421
+L ELWSLL+FI+P E F W DF + + + +N +LH +
Sbjct: 652 SLKELWSLLHFIMP------EKFEFWEDFEEDHGKG-------------RENGYQSLHKV 692
Query: 422 LKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFT 481
L+PFLLRR+KK+V SLP K E I+ ++ LQK+YYK L T
Sbjct: 693 LEPFLLRRVKKDV-EKSLPAKVEQILRVEMSALQKQYYKWIL-----------------T 734
Query: 482 LNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQ 541
N + + + S F+ N++++
Sbjct: 735 RNYKALAKGTRGSTSGFL-------------------------------------NIVME 757
Query: 542 LRQIVNSTYLFYFPL---LEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFV 598
L++ N YL P E L +L+++SGKL +L KL+ L ++ ++VLIFSQ V
Sbjct: 758 LKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMV 817
Query: 599 SMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLT 658
MLD++ ++ + ++ R+DGS++ RK+ ++ F+ GS+ FLLSTRA GLGINL
Sbjct: 818 RMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLA 877
Query: 659 AADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEK 718
+AD+V+IFDSDWNPQ DLQA RAHRIGQ K V +YRL T+E I+ RA K L+
Sbjct: 878 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDH 937
Query: 719 LVIQ-------------MGKFNTLKKLAFNEQ---TFLKMNGSSLATTTKQSANKELVKE 762
LVIQ G+ N+ FN++ LK L + ++ +
Sbjct: 938 LVIQRMDTTGRTILENNSGRSNS---NPFNKEELTAILKFGAEDLFKELEGEESEPQEMD 994
Query: 763 LSQLLISNETNQGQADTS---------KIENSDDILEESEMKELLDRSPPAYIPHE 809
+ ++L ET + + TS K+ N + +E E++E + IP E
Sbjct: 995 IDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEE 1050
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 325 bits (834), Expect = 1e-88
Identities = 223/656 (33%), Positives = 335/656 (50%), Gaps = 118/656 (17%)
Query: 187 MQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAF-IYEMDTK 245
+QP F+K +L+ +Q G+NW+ L+ G NGILADEMGLGKT+Q++A +++ I+
Sbjct: 366 VQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN 425
Query: 246 GPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMG-KFFKNNKGEG---- 300
GP +I PLST+ W++ F ++APD+ + Y + Q +R + +F+ N + +G
Sbjct: 426 GPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGN--QKSRDTIREYEFYTNPRAKGKKTM 483
Query: 301 ---VIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGT 357
V++T+YE I++D + S +W+F+ VDE HRLKN L L +NR+L+TGT
Sbjct: 484 KFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGT 543
Query: 358 PLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISN 417
PLQNN+ EL +L+NF++P F+ ++ DF + DE ++ I +
Sbjct: 544 PLQNNIKELAALVNFLMPGRFT----IDQEIDFEN--------------QDEEQEEYIHD 585
Query: 418 LHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIK 477
LH ++PF+LRRLKK+V SLP K E I+ ++ +Q +YYK L K
Sbjct: 586 LHRRIQPFILRRLKKDV-EKSLPSKTERILRVELSDVQTEYYKNIL------------TK 632
Query: 478 DFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQN 537
++ L A G H LLN
Sbjct: 633 NYSALTAGAKGG-------------------------------------HFSLLN----- 650
Query: 538 MMIQLRQIVNSTYLF------YFPLLEPTDLTLENLLK----TSGKLQVLQKLVPELIKK 587
+M +L++ N YLF +T EN+L+ +SGK+ +L +L+ L K
Sbjct: 651 IMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKD 710
Query: 588 KHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLS 647
H+VLIFSQ V MLD++ D+ + R+DG++ + R+ I+ F+ S +FLLS
Sbjct: 711 GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 770
Query: 648 TRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIM 707
TRA GLGINL AD+V+IFDSDWNPQ DLQAM RAHRIGQ V+VYRL +T+E ++
Sbjct: 771 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 830
Query: 708 TRAVNKRKLEKLVIQMGKFNTLKKLAFNE------QTFLKMNGSSLATTTKQSANKE--- 758
RA K LE +I +G + K NE LK ++ T T E
Sbjct: 831 ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLN 890
Query: 759 ------------LVKELSQLLISNETNQGQADTSKIE---NSDDILEESEMKELLD 799
+L + + E Q + + + + DDI+ E E+K+L D
Sbjct: 891 LDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKADIDWDDIIPEEELKKLQD 946
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 323 bits (828), Expect = 7e-88
Identities = 234/707 (33%), Positives = 356/707 (50%), Gaps = 125/707 (17%)
Query: 118 KIKKLQEFVQQSQVYSS--IIADTLLERAGQNDEDE---------------------TPQ 154
K+KK+ +++ + ++S +I D +++ ++D E P
Sbjct: 1085 KVKKMSSYIEDDEDFNSDFVIVDRVVDLITEDDGQEFVLIKWKSLGYEEVTWEPIEMIPA 1144
Query: 155 KKKQ---KKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITL 211
K + +++ I R++ + E +S+S + + L+ YQ EG++WL+
Sbjct: 1145 DKVELWRERQVIDPAKIREKQRPEPEEWKKMSTSKV---WKNGNSLREYQFEGVDWLLYC 1201
Query: 212 YENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDI 271
Y N N ILADEMGLGKT+Q+I L+ IY+ GPFL+ PLST++NW+ EF + D+
Sbjct: 1202 YYNAQNCILADEMGLGKTVQTITFLSRIYDYGIHGPFLVVVPLSTIQNWVREFETWT-DM 1260
Query: 272 PVLKYYNSEGQA-----------ARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQ 320
+ Y+ S RH + KN +IT++E ++ D+E +
Sbjct: 1261 NAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKIDALITTFETVVSDVEFLKKIP 1320
Query: 321 WKFLIVDEGHRLKNINCK-LIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFS 379
W+ ++DE HRLKN NCK L+ L +R+LLTGTPLQNN+ EL+SLLNF+ P F
Sbjct: 1321 WRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFD 1380
Query: 380 DFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSL 439
+ F + F +D+++K L ILKP +LRRLK++V SL
Sbjct: 1381 NSATFLEQFGSCQ-------------TDDQVQK-----LQEILKPMMLRRLKEDV-EKSL 1421
Query: 440 PPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFI 499
PK E II ++ +QKK+Y+ L+ N + GT + + +
Sbjct: 1422 GPKEETIIEVQLSDMQKKFYRAILERNFSHLCK---------------GTSAPSLMNVMM 1466
Query: 500 EWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEP 559
E + + H L+N + +M R P +
Sbjct: 1467 ELRKCCN--------------------HPFLINGAEEAIMNDFR--------LAHPDWDE 1498
Query: 560 TDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRID 619
L + L++ SGK+ +++KL+P+L K HKVLIFSQ V +LDL+E++ ++ RID
Sbjct: 1499 ETLAHKALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERID 1558
Query: 620 GSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAM 679
G+++ + R+ I+ FSK+ S +FLL TRA GLGINLTAAD+VIIFDSDWNPQ DLQA
Sbjct: 1559 GNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQ 1618
Query: 680 DRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTF 739
R HRIGQ K V VYRL NT E + +A K L+K V+Q T
Sbjct: 1619 ARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQ-------------STTA 1665
Query: 740 LKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIENSD 786
LK G++L+ + +EL+K+ + I +E N ++SK D
Sbjct: 1666 LKAEGTALS----KKDVEELLKKGAYGSIMDEEN----ESSKFNEED 1704
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 323 bits (828), Expect = 7e-88
Identities = 223/646 (34%), Positives = 335/646 (51%), Gaps = 119/646 (18%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYE-MDTKG 246
QP +L L+ YQ EGLN+L+ + N N ILADEMGLGKT+QS+++L F+ G
Sbjct: 632 QPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPG 691
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAM--------MGKFFKNNKG 298
PFL+ PLST+ NW EF ++ P + ++ Y + +A+R +G+ K N
Sbjct: 692 PFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGT--RASREVRNKTNDVHKVGRPIKFN-- 747
Query: 299 EGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTP 358
++T+YE++++D ++ +W +L+VDE HRLKN +L L +T N+LL+TGTP
Sbjct: 748 --ALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTP 805
Query: 359 LQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNL 418
LQN++ ELW+LL+F+ P F + + F + ++ +L+ + SE ++NL
Sbjct: 806 LQNSVEELWALLHFLDPGKFKNKDEFVE--NYKNLSSFNESE--------------LANL 849
Query: 419 HTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKD 478
H L+P +LRR+ K+V SLPPK E I+ ++PLQK+YYK L+ N
Sbjct: 850 HLELRPHILRRVIKDV-EKSLPPKIERILRVEMSPLQKQYYKWILERNFHDL-------- 900
Query: 479 FFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNM 538
NK +R G L N+
Sbjct: 901 -------------NKGVR-------------------GNQVSLL--------------NI 914
Query: 539 MIQLRQIVNSTYLFYFPLLEPTD----------LTLENLLKTSGKLQVLQKLVPELIKKK 588
+++L++ N +LF E D L+ ++ +SGKL +L KL+ L + K
Sbjct: 915 VVELKKCCNHPFLF-----ESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRLRETK 969
Query: 589 HKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLST 648
H+VLIFSQ V MLD++ ++ L F R+DGS + R++ ++ F+ S FLLST
Sbjct: 970 HRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLST 1029
Query: 649 RAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMT 708
RA GLGINL AD+V+IFDSDWNPQ DLQAM RAHRIGQ + V +YR ++E I+
Sbjct: 1030 RAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILE 1089
Query: 709 RAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLI 768
RA K L+ LVIQ K N +L E TK+ +N + ELS +L
Sbjct: 1090 RAKRKMVLDHLVIQ--KLNAEGRLEKRE--------------TKKGSNFD-KNELSAILR 1132
Query: 769 SNETNQGQADTSKIENSDDILEESEMKELLDRSPPAYIPHETQFNH 814
+ D + E+ +L ++ E+L+R+ H + H
Sbjct: 1133 FGAEELFKEDKNDEESKKRLL-SMDIDEILERAEQVEEKHTDETEH 1177
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 320 bits (820), Expect = 6e-87
Identities = 227/603 (37%), Positives = 314/603 (51%), Gaps = 104/603 (17%)
Query: 149 EDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSF-MQPSFLKNC--QLKPYQKEGL 205
ED K+ KK K+++P D +P + F QP ++ + L PYQ EGL
Sbjct: 651 EDTRLPKRLLKKGKKLRDDKQEKPPD--TPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGL 708
Query: 206 NWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLSTVENWMNEF 264
NWL + G + ILADEMGLGKT+Q+I L +Y E +KGP+L++APLST+ NW EF
Sbjct: 709 NWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREF 768
Query: 265 ARFAPDIPVLKY--------------YNSEGQAARHAMMGKFFKNNKGEG----VIITSY 306
+APD V+ Y ++ E A R K F+ K V++TSY
Sbjct: 769 EMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGK--KVFRMKKEVQIKFHVLLTSY 826
Query: 307 EIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGEL 366
E+I D ++ S +W L+VDE HRLKN K R L +LLLTGTPLQNNL EL
Sbjct: 827 ELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 886
Query: 367 WSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFL 426
+ LLNF+ P F++ E F + +F+D++ E D+++K LH +L P +
Sbjct: 887 FHLLNFLTPERFNNLEGFLE--EFADISKE-----------DQIKK-----LHDLLGPHM 928
Query: 427 LRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEY 486
LRRLK +V ++P K E I+ ++ +QKKYYK L N F LN++
Sbjct: 929 LRRLKADVFK-NMPAKTELIVRVELSQMQKKYYKFILTRN------------FEALNSKG 975
Query: 487 IGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIV 546
G LLN +M+ L++
Sbjct: 976 GGN-------------------------------------QVSLLN-----IMMDLKKCC 993
Query: 547 NSTYLF-----YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSML 601
N YLF P+L +L+K+SGKL +LQK++ +L + H+VLIFSQ ML
Sbjct: 994 NHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKML 1053
Query: 602 DLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAAD 661
DL+ED+ E + RIDG + R+E I+ F+ G++ FLLSTRA GLGINL AD
Sbjct: 1054 DLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATAD 1113
Query: 662 SVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVI 721
+VII+DSDWNP D+QA RAHRIGQ K V++YR ++E I A K L LV+
Sbjct: 1114 TVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1173
Query: 722 QMG 724
+ G
Sbjct: 1174 RPG 1176
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 320 bits (819), Expect = 7e-87
Identities = 220/609 (36%), Positives = 312/609 (51%), Gaps = 109/609 (17%)
Query: 152 TPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQ----------LKPYQ 201
T Q + Q+ + + + +R + D P FLK+ L PYQ
Sbjct: 218 TFQNEIQRFKDVNSRTRRSKDVDHKRNPRDFQQFDHTPEFLKDVMIYLFPAIEGLLHPYQ 277
Query: 202 KEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWM 261
EGLN+L + + ILADEMGLGKTIQSIALLA ++E + P L+ APLST+ NW
Sbjct: 278 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFE-ENLIPHLVIAPLSTLRNWE 336
Query: 262 NEFARFAPDIPVLKYYNSEGQAA---RHAM-----MGKFFKNNKGE------------GV 301
EFA +AP + V+ Y+ + A H K K G+ V
Sbjct: 337 REFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDV 396
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
++TSYE+I D ++ +W+ +IVDEGHRLKN + KL L + ++++R+LLTGTPLQN
Sbjct: 397 LLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQN 456
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTI 421
NL EL+ L++F+ F E F + +F D+N E IS LH +
Sbjct: 457 NLDELFMLMHFLDAGKFGSLEEFQE--EFKDINQEEQ----------------ISRLHKM 498
Query: 422 LKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFT 481
L P LLRR+KK+V+ +PPK+E I+ ++ LQK+YY K FT
Sbjct: 499 LAPHLLRRVKKDVMK-DMPPKKELILRVDLSSLQKEYY-----------------KAIFT 540
Query: 482 LNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQ 541
N + + I L N+M++
Sbjct: 541 RNYQVLTKKGGAQIS--------------------------------------LNNIMME 562
Query: 542 LRQIVNSTYLF--YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVS 599
LR++ Y+ P++ + + LL++ GKLQ+L K++ +L ++ H+VLI++QF
Sbjct: 563 LRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQH 622
Query: 600 MLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTA 659
MLDL+ED+ + RIDG + R+ +I+ F+ K S FLLSTRA GLGINL
Sbjct: 623 MLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLAT 682
Query: 660 ADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKL 719
AD+VII+DSDWNP DLQAM RAHR+GQT V++YRL TIE +M K LE L
Sbjct: 683 ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHL 742
Query: 720 VIQMGKFNT 728
V+ GK T
Sbjct: 743 VV--GKLKT 749
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 317 bits (811), Expect = 6e-86
Identities = 229/658 (34%), Positives = 321/658 (47%), Gaps = 116/658 (17%)
Query: 92 KASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQNDEDE 151
K S D A E D N N I +K + +E + ++ R + +
Sbjct: 512 KELSYDQATWERDDSNIANYEEAI-IKYWQHRESKLNEDIPKNVQKMIAKHREAKGLPPK 570
Query: 152 TPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNC--QLKPYQKEGLNWLI 209
+KKK+K+E I K + +QP ++ +L PYQ EGLNWL
Sbjct: 571 EDEKKKKKREKIDIRKKYE----------------VQPDYVTETGGKLHPYQLEGLNWLR 614
Query: 210 TLYENGLNGILADEMGLGKTIQSIALL-AFIYEMDTKGPFLIAAPLSTVENWMNEFARFA 268
+ NG + ILADEMGLGKT+QS+ L + + E KGPFLIAAPLST+ NW E ++
Sbjct: 615 HCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAPLSTIINWEREAEQWC 674
Query: 269 PDIPVLKYYNS---------------EG--QAARHAMMGKFFKNNKGEGVIITSYEIIIR 311
PD V+ Y EG ++ A K +N K V++TSYE I
Sbjct: 675 PDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENMKFH-VLLTSYETINM 733
Query: 312 DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLN 371
D ++ S +W L+VDE HRLKN + L R+LLTGTPLQNNL EL+ LLN
Sbjct: 734 DKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLN 793
Query: 372 FILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLK 431
F+ F+ E F +F++++ E D++EK LH +L P +LRRLK
Sbjct: 794 FLSKERFNQLEAFTA--EFNEISKE-----------DQIEK-----LHNLLGPHMLRRLK 835
Query: 432 KNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVS 491
+VL G +P K E I+ ++ +QKK+YK L N F LN + GT
Sbjct: 836 ADVLTG-MPSKSELIVRVELSAMQKKWYKNILTRN------------FDALNVKNGGT-- 880
Query: 492 NKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYL 551
L N++++L++ N YL
Sbjct: 881 ----------------------------------------QMSLMNVLMELKKCCNHPYL 900
Query: 552 FYFPLLEPTD-----LTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIED 606
F LE L+K SGK +LQK++ +L H+VLIFSQ MLD++ED
Sbjct: 901 FVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMED 960
Query: 607 WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIF 666
E + RIDGS+ R++ I+ ++ G++ +FLLSTRA GLGINL AD+VII+
Sbjct: 961 LCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIY 1020
Query: 667 DSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMG 724
DSDWNP D+QA RAHR+GQ V++YR ++E I + A K L LV++ G
Sbjct: 1021 DSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRAG 1078
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 316 bits (809), Expect = 1e-85
Identities = 222/657 (33%), Positives = 336/657 (50%), Gaps = 122/657 (18%)
Query: 163 IQTLMKRDEPKDEGSPSTSLSSSF-------MQPSFLKNCQLKPYQKEGLNWLITLYENG 215
IQ +R+E S T+ +S QPS++ +L+ +Q G+NW+ L+
Sbjct: 334 IQAFQEREESALSPSRGTNYGNSRPKYRKLEQQPSYITGGELRDFQLTGVNWMAYLWHKN 393
Query: 216 LNGILADEMGLGKTIQSIALLAFI-YEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVL 274
NGILADEMGLGKT+Q++A L+++ + + GPFL+ PLSTV W A +A D+ +
Sbjct: 394 ENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCI 453
Query: 275 KYYNSEGQAARHAMMG-KFFKNNKGE---GVIITSYEIIIRDIELILSYQWKFLIVDEGH 330
Y + +R + +F+ + + +++T+YE +++D ++ + +W+++ +DE H
Sbjct: 454 SYLGNT--TSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAH 511
Query: 331 RLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDF 390
RLKN L L + SNRLL+TGTPLQNN+ EL +L++F++P F E
Sbjct: 512 RLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIRE-------- 563
Query: 391 SDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCP 450
++NLE+ DE ++ I +L L+P++LRRLKK+V SLP K E I+
Sbjct: 564 -EINLEAP---------DEEQEAYIRSLQEHLQPYILRRLKKDV-EKSLPSKSERILRVE 612
Query: 451 VTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDI 510
++ LQ +YK L N + Q +S+ SQ
Sbjct: 613 LSDLQMYWYKNILTRNYRVLTQ-----------------------------SISSGSQ-- 641
Query: 511 PNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLF------YFPLLEP---TD 561
L N++++L++ N YLF + + D
Sbjct: 642 ----------------------ISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRD 679
Query: 562 LTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGS 621
L+ L+ SGK+ +L KL+ L + H+VLIFSQ V MLD++ D+ L + R+DG+
Sbjct: 680 EVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGT 739
Query: 622 MQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDR 681
+ R+ I+ F+ S +FLLSTRA GLGINL AD+VIIFDSDWNPQ DLQAM R
Sbjct: 740 VPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMAR 799
Query: 682 AHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLK 741
AHRIGQ V+VYRL +TIE ++ RA K LE +I +G
Sbjct: 800 AHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLG----------------- 842
Query: 742 MNGSSLATTTKQSAN-KELVKELSQLLISNETNQGQADTS--KIE--NSDDILEESE 793
+ K S N K +ELS +L +N +A+ + K+E N D+ILE +E
Sbjct: 843 -----VTDKQKNSKNDKFSAEELSAILKFGASNMFKAENNQKKLEDMNLDEILEHAE 894
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 306 bits (785), Expect = 6e-83
Identities = 208/618 (33%), Positives = 314/618 (50%), Gaps = 96/618 (15%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAF-IYEMDTKG 246
QPS++K +++ +Q G+NW+ L+ NGILADEMGLGKT+Q++ L++ ++ + G
Sbjct: 381 QPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQHG 440
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE---GVII 303
PFLI PLSTV W A + PD+ + Y + A + N + +++
Sbjct: 441 PFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFNILL 500
Query: 304 TSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
T+YE I++D + + + +W++L +DE HRLKN L L + T+NRLL+TGTPLQNNL
Sbjct: 501 TTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNL 560
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
EL SL+NF++P K++ +LN + + + + I D E+ L+
Sbjct: 561 KELASLVNFLMP---------GKFYIRDELNFDQPNAEQERDIRDLQER---------LQ 602
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLN 483
PF+LRRLKK+V SLP K E I+ ++ +Q ++YK L K++ L
Sbjct: 603 PFILRRLKKDV-EKSLPSKSERILRVELSDMQTEWYKNIL------------TKNYRALT 649
Query: 484 AEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLR 543
G + +E K + L+ K ++ +++
Sbjct: 650 GHTDGRGQLSLLNIVVELK-----------KVSNHPYLFPGAAEKWMMGRKMTREDTLRG 698
Query: 544 QIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDL 603
I+NS GK+ +L KL+ L H+VLIFSQ V ML++
Sbjct: 699 IIMNS-----------------------GKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNI 735
Query: 604 IEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSV 663
+ ++ L + R+DG++ + R+ I+ F+ S +FLLSTRA GLGINL AD+V
Sbjct: 736 LGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTV 795
Query: 664 IIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQM 723
IIFDSDWNPQ DLQAM RAHRIGQ V VYR +T+E I+ RA K LE +I +
Sbjct: 796 IIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIISL 855
Query: 724 GKFNTLKKLAFNEQTFLKMNGSSLATTTKQSAN-KELVKELSQLLISNETNQGQA--DTS 780
G + +K S N K +ELS +L +N +A +
Sbjct: 856 G----------------------VTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQK 893
Query: 781 KIENS--DDILEESEMKE 796
K+EN DDIL +E ++
Sbjct: 894 KLENMNLDDILSHAEDRD 911
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 304 bits (779), Expect = 3e-82
Identities = 222/625 (35%), Positives = 324/625 (51%), Gaps = 106/625 (16%)
Query: 188 QPSFL---KNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMD 243
QPS++ + +L+ YQ GLNWL + G + ILADEMGLGKTIQ+I+ L +++ E
Sbjct: 469 QPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQ 528
Query: 244 TKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYY---NSEGQAARHAMMGKFFKNNKGEG 300
GPFL+ PLST+ +W E +A + + Y NS H K K
Sbjct: 529 LYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFN- 587
Query: 301 VIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQ 360
+++T+YEI+++D + W F+ VDE HRLKN + L + L +++RLL+TGTPLQ
Sbjct: 588 ILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 647
Query: 361 NNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHT 420
N+L ELWSLL+FI+P E F+ W DF + + + + ++LH
Sbjct: 648 NSLKELWSLLHFIMP------EKFSSWEDFEEEHGKG-------------REYGYASLHK 688
Query: 421 ILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFF 480
L+PFLLRR+KK+V SLP K E I+ ++ LQK+YYK L N K
Sbjct: 689 ELEPFLLRRVKKDV-EKSLPAKVEQILRMEMSALQKQYYKWILTRNYK------------ 735
Query: 481 TLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELL----NKRLQ 536
LS S+ + + M +L H L+ N
Sbjct: 736 ---------------------ALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFY 774
Query: 537 NMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQ 596
N L+ ++ S SGKL +L KL+ L ++ ++VLIFSQ
Sbjct: 775 NKQEALQHLIRS----------------------SGKLILLDKLLIRLRERGNRVLIFSQ 812
Query: 597 FVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGIN 656
V MLD++ ++ + F R+DGS++ RK+ ++ F+ +GS+ FLLSTRA GLGIN
Sbjct: 813 MVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGIN 872
Query: 657 LTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
L +AD+V+IFDSDWNPQ DLQA RAHRIGQ K V +YRL ++E I+ RA K L
Sbjct: 873 LASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVL 932
Query: 717 EKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISN-----E 771
+ LVIQ + +T K + GS+ +++T NKE ELS +L +
Sbjct: 933 DHLVIQ--RMDTTGKTVLH-------TGSAPSSST--PFNKE---ELSAILKFGAEELFK 978
Query: 772 TNQGQADTSKIENSDDILEESEMKE 796
+G+ + + D+IL+ +E E
Sbjct: 979 EPEGEEQEPQEMDIDEILKRAETHE 1003
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 302 bits (774), Expect = 1e-81
Identities = 197/536 (36%), Positives = 283/536 (52%), Gaps = 78/536 (14%)
Query: 192 LKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLI 250
L L+ YQ EG+NWL + IL DEMGLGKT Q+IAL ++ ++ +GPFLI
Sbjct: 41 LTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLI 100
Query: 251 AAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIII 310
PLS + NW E RFAP + + Y G A + + K V++T+YEI +
Sbjct: 101 LCPLSVLSNWKEEMQRFAPGLSCVTY---AGDKEERACLQQDLKQESRFHVLLTTYEICL 157
Query: 311 RDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLL 370
+D + S+ W L+VDE HRLKN + L + L + LLLTGTP+QN+L EL+SLL
Sbjct: 158 KDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLL 217
Query: 371 NFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRL 430
+F+ P++FS E+ + + D+ ES S + LH +L+PFLLRR+
Sbjct: 218 SFVEPDLFSKEEVGDFIQRYQDIEKESESG---------------NELHKLLQPFLLRRV 262
Query: 431 KKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTV 490
K V A LP K E +I ++ LQKKYYK L +L
Sbjct: 263 KAEV-ATELPKKTEVVIYHGMSALQKKYYKAILMKDL----------------------- 298
Query: 491 SNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTY 550
D + K KL ++ + QLR+ V+ Y
Sbjct: 299 ------------------DAFENETAKKVKLQNI--------------LSQLRKCVDHPY 326
Query: 551 LFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSEL 610
LF EP ++ ++L + SGKL +L KL+ L H+VL+FSQ MLD+++D+ +
Sbjct: 327 LFDGVEPEPFEVG-DHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDY 385
Query: 611 NNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDW 670
+ R+DGS++ R I+ F ++ +FLLSTRA G+G+NLTAAD+VI DSD+
Sbjct: 386 RGYSYERVDGSVRGEERHLAIKNFGQQ--PIFVFLLSTRAGGVGMNLTAADTVIFVDSDF 443
Query: 671 NPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKF 726
NPQ DLQA RAHRIGQ K V V RL +T+E ++ +A +K +L ++I+ G F
Sbjct: 444 NPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHF 499
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 297 bits (760), Expect = 5e-80
Identities = 208/548 (37%), Positives = 296/548 (53%), Gaps = 52/548 (9%)
Query: 188 QPSFL-KNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKG 246
QPS L ++ LKPYQK GLNWL ++++GLNGILADEMGLGKTIQ+IA LA++Y+ G
Sbjct: 487 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNG 546
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSY 306
P LI P ST++NW+ E + P + VL YY S Q R + + VI+T+Y
Sbjct: 547 PHLIVVPASTIDNWLREVNLWCPTLKVLCYYGS--QEERKQIRFNIHSRYEDYNVIVTTY 604
Query: 307 EIIIR---DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
I D L + + I DEGH LKN+ + L IN +NRLLLTGTP+QNNL
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
EL SLLNF++P++FS S++ SS+ + EK I++ I+K
Sbjct: 665 LELMSLLNFVMPHMFSS--------STSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIK 716
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYY-------KQALKGNLKQT------ 470
PF+LRR+K+ VL LPPK++ I C ++ Q++ Y K+++ K T
Sbjct: 717 PFILRRVKEEVLK-QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVM 775
Query: 471 IQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKEL 530
+Q + + + L+ +Y K + + K + P+ ME + D +H
Sbjct: 776 MQLRKMANHPLLHRQYYTAEKLKEMSQLM-LKEPTHCEANPDLIFEDMEVMTDFELHV-- 832
Query: 531 LNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHK 590
+ Q R I N F L DL L+ SGK +VL ++ EL +K +
Sbjct: 833 -------LCKQYRHINN------FQL--DMDLILD-----SGKFRVLGCILSELKQKGDR 872
Query: 591 VLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRA 650
V++FSQF MLD++E + + R+DG Q + R I+EF+ +FLLST+A
Sbjct: 873 VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTKA 931
Query: 651 AGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRA 710
GLGINLT+A+ VI+ D D NP D QA DR HR+GQTK V+V +L TIE ++
Sbjct: 932 GGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 991
Query: 711 VNKRKLEK 718
K KLE+
Sbjct: 992 QQKLKLEQ 999
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 297 bits (760), Expect = 5e-80
Identities = 215/638 (33%), Positives = 332/638 (51%), Gaps = 102/638 (15%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKG 246
QP L+ L +Q E LNWL + N ILADEMGLGKT+ + A L+ +Y E
Sbjct: 666 QPQELRGGALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVAR 725
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE------- 299
P L+ PLST+ NW++EF+ +AP + V++Y+ S A KN+ G
Sbjct: 726 PCLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTSY 785
Query: 300 --GVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGT 357
V++T+YE+++ D + W+ L+VDEGHRLKN KL L + +R+LLTGT
Sbjct: 786 KFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGT 845
Query: 358 PLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISN 417
PLQNN+GE+++LLNF+ P+ F F + F DL +S+EK+ +EL+K
Sbjct: 846 PLQNNIGEMYNLLNFLQPSSFPSLSSFEE--RFHDL---TSAEKV-----EELKK----- 890
Query: 418 LHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIK 477
++ P +LRRLKK+ + ++PPK E ++ +T +Q +YY+ L N Q ++
Sbjct: 891 ---LVAPHMLRRLKKDAMQ-NIPPKTERMVPVELTSIQAEYYRAMLTKNY------QILR 940
Query: 478 DFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQN 537
NIG K + + + N
Sbjct: 941 ------------------------------------NIG-----------KGVAQQSMLN 953
Query: 538 MMIQLRQIVNSTYLFYFPLLEPTDLTLENL----LKTSGKLQVLQKLVPELIKKKHKVLI 593
+++QLR++ N YL P EP +LE L +K S KL +L ++ L K+ H+VLI
Sbjct: 954 IVMQLRKVCNHPYL--IPGTEPESGSLEFLHDMRIKASAKLTLLHSMLKVLHKEGHRVLI 1011
Query: 594 FSQFVSMLDLIEDW--SELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAA 651
FSQ +LD++ED+ E R+DGS+ R+ I F++ ++ +FLLSTRA
Sbjct: 1012 FSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAIARFNQDKNRF-VFLLSTRAC 1070
Query: 652 GLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAV 711
GLGINL AD+VII+DSD+NP D+QAM+RAHRIGQ+K ++VYRL ++E I+ A
Sbjct: 1071 GLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAK 1130
Query: 712 NKRKLEKLVIQMG----KFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLL 767
K L++L + +F + + E+ F G + T + + N +++ +L
Sbjct: 1131 KKLMLDQLFVNKSGSQKEFEDILRWG-TEELFNDSAGENKKDTAESNGNLDVIMDLESK- 1188
Query: 768 ISNETNQGQADTSKIE----NSDDILEESEMKELLDRS 801
S + G D + + N + ++ + +LLDRS
Sbjct: 1189 -SRKKGGGLGDVYQDKCTEGNGKIVWDDIAIMKLLDRS 1225
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 296 bits (759), Expect = 7e-80
Identities = 193/542 (35%), Positives = 280/542 (51%), Gaps = 74/542 (13%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGP 247
QPSF+K L PYQ +GLNWL + ILADEMGLGKT+Q I+ ++ ++ P
Sbjct: 547 QPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCFP 606
Query: 248 FLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAA---RHAMMGKFFKNNKGEGVIIT 304
L+ P +TV NW E ++AP + + SE + + ++ + + V++
Sbjct: 607 VLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLVI 666
Query: 305 SYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLG 364
S + R+I L+ +QWK LIVDEG RLKN L L + + +LLLTGTPLQNN+
Sbjct: 667 SASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNVR 726
Query: 365 ELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKP 424
EL++LL F+ P + E+ EK II+ E ++ LH ILKP
Sbjct: 727 ELFNLLQFLNPMKINAAEL----------------EKRYSIIDTE----KVTELHQILKP 766
Query: 425 FLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNA 484
F LRR+K VL + P K E II +TP+QK YK L NL
Sbjct: 767 FFLRRVKSEVL-DNFPTKVEVIIPLSMTPVQKGLYKSILSKNL----------SLLRNIT 815
Query: 485 EYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQ 544
Y T S+ R L N+++QLR+
Sbjct: 816 GYANTSSSGGQR-----------------------------------TTSLNNILMQLRK 840
Query: 545 IVNSTYLFYFPLLE----PTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSM 600
+ Y+ Y P +E P +L + +L + S K +L+ LVP+LI + H++L+FSQF+
Sbjct: 841 TLAHPYI-YSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRGHRILLFSQFIQQ 899
Query: 601 LDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAA 660
LD++EDW E N R DG+ R+ I+ F+ S+ + FLLSTRA G+GINL +A
Sbjct: 900 LDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLASA 959
Query: 661 DSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
D+VII D D+NP D+QA+ RAHR GQ K V+V+ L +++E I+ A K L+ L+
Sbjct: 960 DTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLI 1019
Query: 721 IQ 722
++
Sbjct: 1020 VE 1021
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 295 bits (755), Expect = 2e-79
Identities = 213/621 (34%), Positives = 310/621 (49%), Gaps = 90/621 (14%)
Query: 173 KDEGSPSTSLSSSFM-QPSFLKNCQLK--PYQKEGLNWLITLYENGLNGILADEMGLGKT 229
+D +P+ L+ + QP FLK LK P+Q EG++WL + G+ ILADEMGLGKT
Sbjct: 240 RDRPAPTIDLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKT 299
Query: 230 IQSIALLAFIY-EMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAAR--- 285
IQ++ L ++ E +GPFLI+ PLST+ NW E +AP++ + Y G+ AR
Sbjct: 300 IQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVG--GKTARAVI 357
Query: 286 -------HAMMGKFFKNNKGE---GVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNI 335
+ K + N+ + V++TSYE I D + W L+VDE HRL++
Sbjct: 358 RKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSN 417
Query: 336 NCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNL 395
K R L + +LLLTGTPLQNNL EL+ LLNF+ F+D + F +F+D++
Sbjct: 418 QSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQA--EFTDVSK 475
Query: 396 ESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQ 455
E + LH IL+P +LRRLK +VL S+PPK E+I+ ++ +Q
Sbjct: 476 EEQ----------------VKRLHEILEPHMLRRLKADVLK-SMPPKSEFIVRVELSSMQ 518
Query: 456 KKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNI 515
KK+YK L N K QK + LN I K + +A+ I +
Sbjct: 519 KKFYKHILTKNFKALNQKGGGRVCSLLN---IMMDLRKCCNHPYLFPSAAEEATISPSGL 575
Query: 516 GKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQ 575
+M L +LL+K L+
Sbjct: 576 YEMSSLTKASGKLDLLSKMLK--------------------------------------- 596
Query: 576 VLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFS 635
+L H+VL+FSQ ML+++E + E + RIDGS++ + R++ I+ F+
Sbjct: 597 -------QLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFN 649
Query: 636 KKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYR 695
S+ +FLLSTRA GLGINL AD+VIIFDSDWNP D+QA RAHR+GQ K V++YR
Sbjct: 650 DPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYR 709
Query: 696 LYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNE-QTFLKMNGSSLATTTKQS 754
N++E IM A +K L LV++ G + +E + L+ L K
Sbjct: 710 FVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRFGTEDLFKDGKSE 769
Query: 755 ANKELVKELSQLLISNETNQG 775
A K ++ LL + TN+G
Sbjct: 770 AIHYDDKAVADLL--DRTNRG 788
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 291 bits (745), Expect = 3e-78
Identities = 201/547 (36%), Positives = 303/547 (54%), Gaps = 44/547 (8%)
Query: 188 QPSFLKN-CQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMD-TK 245
QP L + QL YQ GLNWL +++ +NGILADEMGLGKTIQ IA LA++ E ++
Sbjct: 279 QPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQ 338
Query: 246 GPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNN-KGEGVIIT 304
LI P ST++NW E +R+ P++ V KY+ S+ + R M G+F K+ G V++T
Sbjct: 339 AAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDE--RRRMRGRFAKDGFTGFDVLLT 396
Query: 305 SYEII---IRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
+Y I+ + ++ + ++I DE H LKN+ + L IN R+LLTGTPLQN
Sbjct: 397 TYHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQN 456
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTI 421
NL EL SLL F++P F+ D L + + + ++ I I
Sbjct: 457 NLLELISLLCFVMPKFFA-----KSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRI 511
Query: 422 LKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQAL------KGNLKQTIQKQA 475
+KPF+LRRLKK+VL +LP K + P++ QK YY + + KG + + ++
Sbjct: 512 MKPFVLRRLKKDVLK-NLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAG 570
Query: 476 IKDFFTLNAEYIGTVSNKSI---RDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLN 532
I + ++N + F + L S+ + N + +K + +I +EL
Sbjct: 571 IAIMMEMRR-----IANHPLLMRHYFTDANLRGFSKRLANAS--SFKKTNEQYIFEELAV 623
Query: 533 KRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTL-ENLLKTSGKLQVLQKLVPELIKKKHKV 591
Q+ Q++N + FY D+ + +NL+ SGK L L+P+L + H+V
Sbjct: 624 MS----DFQVYQMMNK-HEFY-------DVKIPDNLICDSGKFLYLDTLLPKLKAEGHRV 671
Query: 592 LIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAA 651
L+FSQF MLD++E++ + F CR+DG+ N R++ I +F+ S +FLLST+A
Sbjct: 672 LLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDS-IFVFLLSTKAG 730
Query: 652 GLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAV 711
G+GINLTAAD+ +I D D+NP D QA DR HR+GQ +PV +YRL ++TIE I+ A
Sbjct: 731 GVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAE 790
Query: 712 NKRKLEK 718
K KLEK
Sbjct: 791 EKLKLEK 797
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 289 bits (739), Expect = 1e-77
Identities = 211/609 (34%), Positives = 319/609 (51%), Gaps = 60/609 (9%)
Query: 189 PSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGP 247
P F +L+ YQ EGLNWL+ + + I+ADEMGLGKT+QS+ + ++ + D P
Sbjct: 294 PVFKGGNRLREYQLEGLNWLLNRWYYKQSCIMADEMGLGKTVQSVTFINTLFTKYDYCAP 353
Query: 248 FLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE----GVII 303
L+ PLS + +W EF + D+ VLKY+ + A A K N E V+I
Sbjct: 354 VLVVTPLSIIPHWEREFEAWT-DLRVLKYHENRPGRALIAEYEFVLKKNNLEIRLFDVLI 412
Query: 304 TSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
T+Y+ ++ + E + + + I DE HRLKN K L+ + ++++LL+GTPLQNN+
Sbjct: 413 TTYDTVMAEQEHLSQFHFSVGIFDEAHRLKNAKSKAATILRTLKFNHKVLLSGTPLQNNI 472
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
ELWSLLNFI P FS F F ++N ++EK L +L+
Sbjct: 473 SELWSLLNFIDPMRFSSLPHFLGEFKMENIN--------------DVEK-----LQGLLR 513
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQ--KQAIKDFFT 481
P +LRR+K++V S+P K E II +T +QK++Y+ L+ N++ + K++ +
Sbjct: 514 PLMLRRMKEDV-EKSIPTKEETIIEVALTMIQKRFYRAILEKNIEFLTKGGKESAPNLLN 572
Query: 482 LNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQ 541
+ E + + E ++ + + D+ + E+LN+
Sbjct: 573 VMMELRKCCIHPYLIKGAEEQILSGYLKKKRERSKAEGAENDITLTSEVLNE-------D 625
Query: 542 LRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSML 601
Q NS ++ D + +++SGKL +L KL+ +L K HKVLIFSQ L
Sbjct: 626 EHQDGNS-------VISDIDEYYKIFIQSSGKLVLLDKLLGKL-KDGHKVLIFSQMTRCL 677
Query: 602 DLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAAD 661
DL+ ++ + RIDG + +R+ I+ FS K S +FLLSTRA G+GINLTAAD
Sbjct: 678 DLLAEYLAYRKYKYERIDGGARTENRQAAIDRFSDKTSDVFVFLLSTRAGGVGINLTAAD 737
Query: 662 SVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVI 721
+VIIFDSDWNPQ DLQA R HRIGQT V VYRL +NT E + +A K L++ V+
Sbjct: 738 TVIIFDSDWNPQNDLQAQARCHRIGQTSEVKVYRLVTENTYEREMFDKAGLKLGLDRAVL 797
Query: 722 QMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSK 781
Q K+ F EQ K T K+ A + L+++ + ++ ET+ +
Sbjct: 798 Q--------KMTFEEQKSEK--------TRKKDAIETLLRKGAYGVLM-ETDDASSRKFC 840
Query: 782 IENSDDILE 790
E+ D ILE
Sbjct: 841 EEDIDQILE 849
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 286 bits (732), Expect = 9e-77
Identities = 219/663 (33%), Positives = 326/663 (49%), Gaps = 61/663 (9%)
Query: 85 DEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIK-----KLQEFVQQS---QVYSSII 136
D+ + + KN+ F N + L + K+ +FV + ++Y +++
Sbjct: 272 DDSDIEERRAKRGETKNQKECREFFNKAKKEDLLQQARINDKIADFVLANRPFEIYGAMV 331
Query: 137 ADTLLERAGQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTS-----LSSSFMQPSF 191
A G N E + +K+ + ++ D+ KD T P
Sbjct: 332 AKMKGVTRGTN-AIEAYMEFLEKRGILSRIL--DDCKDHAHTVTKDFERCTEGPLQLPLL 388
Query: 192 LKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIA 251
+ C L YQ G+ WLI +Y LN IL DEMGLGKTIQ +A L+++ ++ GP LI
Sbjct: 389 KEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIV 448
Query: 252 APLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIR 311
P ST+ENW+ EF ++ P I +L YY S+ + R + + K VI+T+Y ++
Sbjct: 449 VPSSTIENWIGEFHKWCPSIQLLTYYGSQDE--RKHLRHRVKKQKDHIDVILTTYNMVTS 506
Query: 312 ---DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWS 368
D + ++ ++I DEGH LKN + + R L ++ ++LLTGTPLQNNL EL S
Sbjct: 507 KSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELIS 566
Query: 369 LLNFILPNIFSDF--EIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFL 426
L+ F+L +F+ + +I + F L ++ D +E+ IL+P++
Sbjct: 567 LMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNKALYQQDRIEE-----AKAILQPYI 621
Query: 427 LRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEY 486
LRRLK VL GSLP K E II + QK+ Y ++ + + L
Sbjct: 622 LRRLKNQVL-GSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEESGDSYGSLMRLRQAA 680
Query: 487 IGTVSNKSIRDFIEWKLSADSQDIPNDNIGKM----EKLYD----MHIHKELLNKRLQNM 538
+ +S ++ + KL D I KM EK Y H+ ++L L ++
Sbjct: 681 NHPLLRRS--EYTDQKL---------DKIAKMLCLREKAYADKKWQHVSEDLA--WLSDI 727
Query: 539 MI-QLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQF 597
I QL + T F L E L SGK + L ++PE+ KK KVLIFSQF
Sbjct: 728 KIHQLCERFRCTSKF---------LLNEQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQF 778
Query: 598 VSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINL 657
SMLD++E + + + R+DG R+E I EF+ +FLLSTRA GLGINL
Sbjct: 779 TSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLS-KDLFVFLLSTRAGGLGINL 837
Query: 658 TAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLE 717
T+A+ +II D D+NP D QA DR HR+GQ KPV V RL T+E ++ A K +LE
Sbjct: 838 TSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLE 897
Query: 718 KLV 720
K V
Sbjct: 898 KQV 900
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 286 bits (731), Expect = 1e-76
Identities = 181/520 (34%), Positives = 282/520 (53%), Gaps = 55/520 (10%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK-G 246
QPS L+ L+ YQ GL W+++LY N LNGILADEMGLGKT+Q +AL+A++ E G
Sbjct: 25 QPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 84
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSY 306
P LI P + + NW +E + P + + Y ++ Q ++ KF K N V++T+Y
Sbjct: 85 PHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVKFEKFN----VLVTTY 140
Query: 307 EIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGEL 366
E I+ D + WK++I+DE R+K+ L R+L R RLLLTGTPLQN+L EL
Sbjct: 141 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 200
Query: 367 WSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKL-TKIINDELEKNLISNLHTILKPF 425
WSLLN +LP++F + + F+ WF E + + + E + +I LH IL+PF
Sbjct: 201 WSLLNLLLPDVFDNRKAFHDWF-AQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPF 259
Query: 426 LLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAE 485
+LRR ++V GSLP K ++ C ++ +Q Y IK TL +
Sbjct: 260 MLRRRVEDV-EGSLPAKVSVVLRCRMSAIQSAVY--------------DWIKATGTLRVD 304
Query: 486 YIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQI 545
P+D + +K I++ + + L N ++LR+
Sbjct: 305 -------------------------PDDEKLRAQK---NPIYQAKIYRTLNNRCMELRKA 336
Query: 546 VNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIE 605
N L Y P D + + L+++ GKL +L +++ +L + H+VL+FS +LD++E
Sbjct: 337 CNHPLLNY-PYF--NDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 393
Query: 606 DWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVII 665
++ + + RIDG+ R+ I +F+ + +FLLS RAAG G+NL AD+V+I
Sbjct: 394 EYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVI 453
Query: 666 FDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENV 705
+D D NP+ + QA+ RAHRIGQT+ V V +Y + +E +
Sbjct: 454 YDPDPNPKNEEQAVARAHRIGQTREVKV--IYMEAVVEKL 491
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 285 bits (728), Expect = 3e-76
Identities = 194/557 (34%), Positives = 299/557 (52%), Gaps = 39/557 (7%)
Query: 188 QPSFL-KNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKG 246
QP L + QLK YQ G+NWL LY+ L+GILADEMGLGKT Q +A A + E G
Sbjct: 540 QPKTLASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLEQGHHG 599
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSY 306
P L+ P ST+ENW+ E ARF P + V YY S+ + A + +N +++T+Y
Sbjct: 600 PHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQERAN--IREAIEENEIKYDILVTTY 657
Query: 307 EIII---RDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
++ D + + + DEGH LKN + + L +N + RLLLTGTPLQNNL
Sbjct: 658 QLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNL 717
Query: 364 GELWSLLNFILPNIF----SDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLH 419
EL SLL FILPN+F D ++ K +D ++E + L K IS
Sbjct: 718 KELVSLLAFILPNMFDSDMDDLDVIFKAKPTADADIEQAL----------LSKQRISRAK 767
Query: 420 TILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQ--ALKGNLK--------Q 469
T++ PF+LRR +KN + LP K + I C ++ Q + Y + AL+ N + +
Sbjct: 768 TMMTPFVLRR-RKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNK 826
Query: 470 TIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKE 529
+ D +L+A ++ K+ + ++ D + + M++ + +++
Sbjct: 827 RSKNDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQYKNANEQ 886
Query: 530 LLNKRLQNMM-IQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKK 588
+ + ++ M +L ++ S FP L+ L ++ SGK++VL++L+P++ ++
Sbjct: 887 YIYEDMEVMSDFELHRLCRS-----FPTLQSYTLK-DDPWMDSGKIRVLKELLPKMKEEG 940
Query: 589 HKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLST 648
++L+FSQF MLD++E + R+DGS Q R++ I++F K+ +FLLST
Sbjct: 941 SRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKE-EDVTVFLLST 999
Query: 649 RAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMT 708
+A G GINL A+ VI++D +NP DLQA DRAHR+GQ + V V RL DNTIE I
Sbjct: 1000 KAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQK 1059
Query: 709 RAVNKRKLEKLVIQMGK 725
A K L+ + GK
Sbjct: 1060 LANTKLALDMSLSSDGK 1076
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 283 bits (725), Expect = 6e-76
Identities = 196/589 (33%), Positives = 299/589 (50%), Gaps = 93/589 (15%)
Query: 152 TPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITL 211
T + +++ EA ++ E K +P F LKP+Q EG++WLI
Sbjct: 13 TTMEYERRLEAAAEIILEKEAKFSNTPPDC-------SEFGVTATLKPHQVEGVSWLIQK 65
Query: 212 YENGLNGILA-DEMGLGKTIQSIALLAFI-YEMDTKGPFLIAAPLSTVENWMNEFARFAP 269
Y G+N +L D+MGLGKT+Q+I+ L+++ + GPFL+ PLS + W++E RF P
Sbjct: 66 YLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTP 125
Query: 270 DIPVLKYYNSEGQAARHAMMGKFFKNNK--GEGVIITSYEIIIRDIELILSYQWKFLIVD 327
++ VL+Y + R M + + V++T+Y+I + D + + W++ I+D
Sbjct: 126 NLEVLRYVGDK--YCRLDMRKSMYDHGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIID 183
Query: 328 EGHRLKNINCKLIREL-KRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNK 386
E RLKN N L L ++ RLL+TGTP+QNNL ELW+L++F +P +F + F
Sbjct: 184 EAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLS 243
Query: 387 WFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGS---LPPKR 443
F + L+ S++K T +L IL F+LRR K ++ LPP
Sbjct: 244 AFKETGDGLDVSNDKET-----------YKSLKFILGAFMLRRTKSLLIESGNLVLPPLT 292
Query: 444 EYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKL 503
E + P+ LQKK Y L+ L ++ L
Sbjct: 293 ELTVMVPLVSLQKKIYTSILRKELPGLLE------------------------------L 322
Query: 504 SADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLT 563
S+ + H L N ++IQLR+ + YL FP +EP
Sbjct: 323 SSGGSN-----------------HTSLQN-----IVIQLRKACSHPYL--FPGIEPEPFE 358
Query: 564 L-ENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSM 622
E+L++ SGKL VL +L+ L H+VL+FSQ S LD+++D+ EL + R+DGS+
Sbjct: 359 EGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSV 418
Query: 623 QNNSRKEQIEEFSKK----------GSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNP 672
+ R I+ FS K GS A +F++STRA G+G+NL AAD+VI ++ DWNP
Sbjct: 419 RAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNP 478
Query: 673 QVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVI 721
QVD QA+ RAHRIGQ V+ L ++++E VI+ RA K +L V+
Sbjct: 479 QVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVV 527
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 281 bits (718), Expect = 4e-75
Identities = 213/651 (32%), Positives = 331/651 (50%), Gaps = 45/651 (6%)
Query: 91 RKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAGQNDED 150
R + ++ED D + E + + ++ ++ + Y+ D + +D+D
Sbjct: 471 RNTTKPKVVEDEDDDVDLEAIDDELPQSEHEDDDYEEEDEDYNDEEEDVEYDDGDDDDDD 530
Query: 151 ETPQKKKQKKEAIQTLMKRDEPKD-----EGSPSTSLSSSFMQPSFLKNCQLKPYQKEGL 205
+ +K + + R+ K +G P + P LK YQ+ G+
Sbjct: 531 DDEFVATRKNTHVISTTSRNGRKPIVKFFKGKPR------LLSPEI----SLKDYQQTGI 580
Query: 206 NWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFA 265
NWL LY+N ++ ILAD+MGLGKT Q I+ A++ +++ GP L+ P ST+ENW+ EF
Sbjct: 581 NWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINEPGPHLVVVPSSTLENWLREFQ 640
Query: 266 RFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE-GVIITSYEIII---RDIELILSYQW 321
+FAP + + YY G + + N G+ VI+T+Y + D+ + + +
Sbjct: 641 KFAPALKIEPYY---GSLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNF 697
Query: 322 KFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIF-SD 380
++ DEGH LKN + +L +I + RLLLTGTPLQNNL EL SLL FI+PN+F S
Sbjct: 698 NVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLFISK 757
Query: 381 FEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLP 440
E F+ F + + K N L + I+ T++KPF+LRR K VL LP
Sbjct: 758 KESFDAIF-----KQRAKTTDDNKNHNPLLAQEAITRAKTMMKPFILRRRKDQVLK-HLP 811
Query: 441 PKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKD-FFTLNAEYIGTVSNKSIRDFI 499
PK +I C + +QKK Y + ++ L+ K+ IKD +A+ + + S ++ I
Sbjct: 812 PKHTHIQYCELNAIQKKIYDKEIQIVLE---HKRMIKDGELPKDAKEKSKLQSSSSKNLI 868
Query: 500 EWKLSAD-----SQDIPNDN-IGKM-EKLYDMHIHKELLNKR-LQNMMIQLRQIVNSTYL 551
A ++I ND I KM + + D + E NK ++ M +
Sbjct: 869 MALRKASLHPLLFRNIYNDKIITKMSDAILDEPAYAENGNKEYIKEDMSYMTDFELHKLC 928
Query: 552 FYFP-LLEPTDLTLENLLKTSGKLQVLQKLVPELI-KKKHKVLIFSQFVSMLDLIEDWSE 609
FP L L + ++ SGK+ L+KL+ +I K+ KVLIFS F +LD++E
Sbjct: 929 CNFPNTLSKYQLHNDEWMQ-SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLS 987
Query: 610 LNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSD 669
++ R+DGS Q N R+ I++F + +F+LST+A G GINL A++VIIFD
Sbjct: 988 TLDYKFLRLDGSTQVNDRQLLIDKF-YEDKDIPIFILSTKAGGFGINLVCANNVIIFDQS 1046
Query: 670 WNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
+NP D QA DRAHR+GQTK V + L ++IE I A NK L+ +
Sbjct: 1047 FNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYI 1097
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 280 bits (715), Expect = 8e-75
Identities = 196/542 (36%), Positives = 285/542 (52%), Gaps = 80/542 (14%)
Query: 188 QPSFLKN-CQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMD-TK 245
QP FL + L+ YQ +GLNWL+ + + ILADEMGLGKTIQ+I L ++++
Sbjct: 518 QPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLY 577
Query: 246 GPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKF---FKNNKGE--G 300
GPFL PLST+ W EF +APD+ V+ Y G ++ ++ F+++K
Sbjct: 578 GPFLCVVPLSTMTAWQREFDLWAPDMNVVTYL---GDIKSRELIQQYEWQFESSKRLKFN 634
Query: 301 VIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQ 360
I+T+YEI+++D + + + QW L+VDE HRLKN + L + LK +T++RLL+TGTPLQ
Sbjct: 635 CILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQ 694
Query: 361 NNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHT 420
N+L ELW+LL+FI+P+ F +E F ++ + E + LH
Sbjct: 695 NSLKELWALLHFIMPDKFDTWENF-------------------EVQHGNAEDKGYTRLHQ 735
Query: 421 ILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFF 480
L+P++LRR+KK+V SLP K E I+ +T LQK+YYK L K+F
Sbjct: 736 QLEPYILRRVKKDV-EKSLPAKVEQILRVEMTSLQKQYYKWIL------------TKNFD 782
Query: 481 TLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMI 540
L G+ S + IE K + H L+ +M
Sbjct: 783 ALRKGKRGSTST-FLNIVIELKKCCN--------------------HAALIRPSEFELMG 821
Query: 541 QLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSM 600
+ T L L D L L +T ++ + ++V L
Sbjct: 822 LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRML---------------- 865
Query: 601 LDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAA 660
D++ D+ + +F R+DGS++ R++ ++ F+ +GS+ FLLSTRA GLGINL A
Sbjct: 866 -DVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATA 924
Query: 661 DSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
D+VIIFDSDWNPQ DLQA RAHRIGQ V +YRL ++E I+ RA K L+ LV
Sbjct: 925 DTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLV 984
Query: 721 IQ 722
IQ
Sbjct: 985 IQ 986
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 268 bits (686), Expect = 2e-71
Identities = 193/578 (33%), Positives = 296/578 (50%), Gaps = 44/578 (7%)
Query: 161 EAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGIL 220
E +L+ D+ K G+P+ S + SF + +L+ YQ G+NWL LYE L GIL
Sbjct: 351 EGETSLVNFDQMKSFGTPANSSFITTPPASFSPDIKLQDYQIIGINWLYLLYELKLAGIL 410
Query: 221 ADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSE 280
ADEMGLGKT Q+IA + + + + GP L+ AP ST+ENW+ EFA+F P + + YY S
Sbjct: 411 ADEMGLGKTCQTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAKFCPKLKIELYYGS- 469
Query: 281 GQAARHAMMGKFFKNNKGEGVIITSYEIII---RDIELILSYQWKFLIVDEGHRLKNINC 337
Q R + + N V++T+Y + D + + ++ + DEGH LKN
Sbjct: 470 -QVEREEIRERINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLKNRAS 528
Query: 338 KLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLES 397
+ R L I R+LLTGTPLQNNL EL SLL FILP++F D+ + K D +S
Sbjct: 529 ERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVF-DYGL--KSLDVIFTMKKS 585
Query: 398 SSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKK 457
+ + L + +S ++ PF+LRR K VL +LP K I C + +++
Sbjct: 586 PESDFERAL---LSEQRVSRAKMMMAPFVLRRKKSQVL-DALPKKTRIIEFCEFSEEERR 641
Query: 458 YYKQ-ALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIG 516
Y A K ++ + + +K NA KS F+ +L +
Sbjct: 642 RYDDFASKQSVNSLLDENVMKTNLDTNA---NLAKKKSTAGFVLVQLR---------KLA 689
Query: 517 KMEKLYDMHIHKELLNKRLQNMMIQLR-QIVNSTYLFYFPLLEPTDLTLENLL------- 568
L+ +H ++L + + +M + + + N Y+F + +D+ L NL
Sbjct: 690 DHPMLFRIHYKDDILRQMAKAIMNEPQYKKANELYIFE-DMQYMSDIELHNLCCKFPSIN 748
Query: 569 ---------KTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRID 619
+ K++ L+KL+ ++ +V++FSQF +LD+++ + N R D
Sbjct: 749 SFQLKDEPWMDATKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFD 808
Query: 620 GSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAM 679
GS Q + R++ I++F S N+FLLST+A G GINL A+ VI++D +NP DLQA
Sbjct: 809 GSTQVDFRQDLIDQFYADES-INVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAE 867
Query: 680 DRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLE 717
DRAHR+GQ K V VY+ +TIE I A K L+
Sbjct: 868 DRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIALD 905
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 259 bits (662), Expect = 1e-68
Identities = 187/560 (33%), Positives = 285/560 (50%), Gaps = 65/560 (11%)
Query: 197 LKPYQKEGLNWLITLYENGLNG-ILADEMGLGKTIQSIALLAFIYEMDTK-GPFLIAAPL 254
LKPYQ G+N+L+ LY+ G+ G ILADEMGLGKTIQ+I L + ++ GP L+ P
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPA 272
Query: 255 STVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE--GVIITSYEIIIR- 311
S +ENW E ++ P VL+Y+ + +AA + K K V++ Y + R
Sbjct: 273 SVLENWERELRKWCPSFTVLQYHGA-ARAAYSRELNSLSKAGKPPPFNVLLVCYSLFERH 331
Query: 312 ------DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRI--NTSNRLLLTGTPLQNNL 363
D +++ ++W +++DE H LK+ N + L + N + RL+LTGTPLQN+L
Sbjct: 332 SEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDL 391
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
ELWSLL F+LP+IF+ + + L K++N E + LI+ + +IL
Sbjct: 392 HELWSLLEFMLPDIFT-----------------TENVDLKKLLNAE-DTELITRMKSILG 433
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALK------------------G 465
PF+LRRLK +V+ L PK + + + Q+ YK+A++
Sbjct: 434 PFILRRLKSDVMQ-QLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLN 492
Query: 466 NLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMH 525
+L + + K+ I ++FT R L D I KL+ +
Sbjct: 493 SLAKALPKRQISNYFT------------QFRKIANHPLLIRRIYSDEDVIRIARKLHPIG 540
Query: 526 IHK-ELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPEL 584
E R+ + LF + + + + + S K + L +L+P +
Sbjct: 541 AFGFECSLDRVIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLSAKCRTLAELLPSM 600
Query: 585 IKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLF 644
K H+VLIFSQ+ SMLD++E ++ R+DGS Q R+ ++ F+ S
Sbjct: 601 KKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKS-IFAC 659
Query: 645 LLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIEN 704
LLSTRA G G+NLT AD+VII D D+NPQ+D QA DR HRIGQTKPV ++RL +T++
Sbjct: 660 LLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDE 719
Query: 705 VIMTRAVNKRKLEKLVIQMG 724
I A K L+ V++ G
Sbjct: 720 NIYEIAKRKLVLDAAVLESG 739
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 256 bits (655), Expect = 8e-68
Identities = 194/570 (34%), Positives = 290/570 (50%), Gaps = 65/570 (11%)
Query: 168 KRDEPKDEGSPSTSLSSSFMQPSFLKN-CQLKPYQKEGLNWLITLYENGLNGILADEMGL 226
K ++ + + S S + QPS + + LK YQ GLNWL +Y+ L+GILADEMGL
Sbjct: 384 KMEQFLNTSTGSISYEYNSQQPSSIASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGL 443
Query: 227 GKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARH 286
GKT Q I+ LA + E + L+ P ST+ NW+ EF +F P + V Y ++ +
Sbjct: 444 GKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEKFCPSLRVESYSGTQSERINK 503
Query: 287 AMMGKFFKNNKGEGVIITSYEIII---RDIELILSYQWKFLIVDEGHRLKNINCKLIREL 343
+++ + V++T+Y++ D + ++ I DEGH LKN + + L
Sbjct: 504 ----RYYLMDTDFDVLVTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHL 559
Query: 344 KRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSD----FEIFNKWFDFSDLNLESSS 399
I + RLL+TGTPLQNNL EL SLL F+LP +F + +I K SD ++E +
Sbjct: 560 MNIPANFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERA- 618
Query: 400 EKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYY 459
L + IS TI+ PF+LRR K+NVL+ LPPK +++ C + Q Y
Sbjct: 619 ---------YLSQERISRAKTIMNPFILRRRKENVLS-DLPPKIQHVEYCHMEETQLSLY 668
Query: 460 KQAL---------KGNLKQTIQKQAIKDFF---TLNAEYIGTVSNKSIRDFIEWKLSADS 507
L + N+ ++K A+ N E + +S + +R+ + L A+
Sbjct: 669 LSVLELKNLVNANRENILMQLRKAALHQLLFRSQYNLETLSLMSKRILRE--DAYLDANP 726
Query: 508 QDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENL 567
Q I D ME + D +HK + Q R L P L +
Sbjct: 727 QYIFED----MEVMSDFELHK---------LADQYRH------------LHPFALKGKPW 761
Query: 568 LKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSR 627
+ S K++ L L+ + + ++LIFSQF +LD++E + R+DGS +R
Sbjct: 762 M-DSAKVKKLCSLLKK-SRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETR 819
Query: 628 KEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQ 687
++ I++F +FLLST++ G GINLT A+ VI+FD +NP D+QA DRAHR+GQ
Sbjct: 820 QQLIDDF-HTNENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQ 878
Query: 688 TKPVIVYRLYCDNTIENVIMTRAVNKRKLE 717
T+PV VYRL NTIE I A K LE
Sbjct: 879 TRPVHVYRLITKNTIEENIRRLANTKLTLE 908
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 253 bits (645), Expect = 1e-66
Identities = 187/633 (29%), Positives = 316/633 (49%), Gaps = 57/633 (9%)
Query: 194 NCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMD---------- 243
NC+L +Q+EG+ ++ LY+N GIL D+MGLGKTIQ+IA LA +Y D
Sbjct: 148 NCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLE 207
Query: 244 -TKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVI 302
KGP LI P S + NW +EF+R+A V Y+ S R ++ K +G V+
Sbjct: 208 SDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSN----RDMILEKL--KARGVEVL 261
Query: 303 ITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNN 362
+TS++ ++ W+ +I DE HRLKN KL I T R+ LTGT +QN
Sbjct: 262 VTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNK 321
Query: 363 LGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTIL 422
+ EL++L ++ P E F ++D L L + + + ++ +L ++L
Sbjct: 322 ISELFNLFEWVAPGSLGTREHFRDFYD-EPLKLGQRATAPERFV--QIADKRKQHLGSLL 378
Query: 423 KPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTL 482
+ ++LRR K+ + + K + ++ C ++ LQ++ Y++ ++ IQ KD
Sbjct: 379 RKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQ---LPEIQCLVNKD---- 431
Query: 483 NAEYIGTVSNKS------IRDFIEWK-LSADSQDIPND-----NIGKMEKLYDMHIHKEL 530
N G+ +S + D W L D+ D + + + KL + H EL
Sbjct: 432 NPCACGSPLKQSECCRRIVPDGTIWSYLHRDNHDGCDSCPFCLVLPCLMKLQQISNHLEL 491
Query: 531 LNKRLQNMMIQLR---QIVNSTYLFYFPLLEPTDLTLENL----LKTSGKLQVLQKLVPE 583
+ ++ + + + V++ + LL + + +K GK++ L+KL+
Sbjct: 492 IKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLSDVKHCGKMRALEKLMAS 551
Query: 584 LIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANL 643
I K K+L+FS V MLD++E + + R+DGS N R+ +++F+ SK +
Sbjct: 552 WISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSK-QV 610
Query: 644 FLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIE 703
FL+ST+A GLG+NL +A+ V+IFD +WNP DLQA DR+ R GQ + V+V+RL ++E
Sbjct: 611 FLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLE 670
Query: 704 NVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKEL 763
++ TR V K++L + + GK T + Q + G + L ++L
Sbjct: 671 ELVYTRQVYKQQLSNIAV-AGKMET--RYFEGVQDCKEFQGELFGIS-------NLFRDL 720
Query: 764 SQLLISNETNQGQADTSKIENSDDILEESEMKE 796
S L +++ + D++ EN L E+ + E
Sbjct: 721 SDKLFTSDIVELHRDSNIDENKKRSLLETGVSE 753
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 244 bits (622), Expect = 5e-64
Identities = 170/570 (29%), Positives = 274/570 (47%), Gaps = 65/570 (11%)
Query: 186 FMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK 245
F P FL + L PYQ++G+ W++ LY + G+LAD+MGLGKTIQ I L +
Sbjct: 141 FSVPGFLWS-SLFPYQQDGVRWMLRLYRDEKGGVLADDMGLGKTIQVIVFLGALLHSRVV 199
Query: 246 GPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITS 305
LI P + V WM+E+ RF P + + G F N EGV + S
Sbjct: 200 SKALILCPATIVSQWMDEWKRFYPFVRIF--------------FG--FPNEDCEGVYLMS 243
Query: 306 YEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGE 365
YE ++ ++ W LI+DEGHR+KN N ++ +K+ + R +L+GTP+QNNLGE
Sbjct: 244 YEKFKAGVK---NFLWDVLILDEGHRIKNKNAQITLSVKKARSRGRFVLSGTPIQNNLGE 300
Query: 366 LWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPF 425
LWS+ +F+ P + FN+ +F ++ + + ++ ++ + L ++++P+
Sbjct: 301 LWSIFDFVNPGLLGSHTSFNE--EFEEVIRRGGYRNASNLQVEKAYRHSLM-LRSLIEPY 357
Query: 426 LLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAE 485
+LRR K V + LP K + I+ C +TP Q + Y + ++ + I T A
Sbjct: 358 ILRRTKSQV-SHKLPSKEDKIVFCSLTPAQIELYNRV--------LESKHIMKVLTGKAN 408
Query: 486 YIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQI 545
+ +S L + H LL R + +
Sbjct: 409 LLSGIS----------------------------MLRKVCNHPRLLFPRKLGVSEDCEEE 440
Query: 546 VNSTYLFYFPLLE-PTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLI 604
+ LE P +L+ +S K+++L L+ + + +KVL+FSQ + MLD+I
Sbjct: 441 ASDEKNGEDEALELPGADVSYDLVSSSCKIKILVDLLKKWRSEGNKVLVFSQTIRMLDII 500
Query: 605 EDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVI 664
E + + R+DG +SR ++ F++ LFLL+T+ GLG+NLT A ++
Sbjct: 501 ERC--VRKYTYLRMDGRTPTSSRPGLVDRFNED-EDVFLFLLTTKVGGLGLNLTGASRIV 557
Query: 665 IFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMG 724
I+D DWNP D QA +RA R GQ K V +YR C +TIE + + + K L K V+
Sbjct: 558 IYDPDWNPSTDTQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQIFKDLLGKKVLSNP 617
Query: 725 KFNT-LKKLAFNEQTFLKMNGSSLATTTKQ 753
+ + K NE M G + T +
Sbjct: 618 RLSRFFNKSCINELFSFTMTGDLVEVKTHE 647
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 243 bits (620), Expect = 9e-64
Identities = 190/618 (30%), Positives = 303/618 (48%), Gaps = 80/618 (12%)
Query: 132 YSSIIADTLLERAGQNDEDETPQK----KKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFM 187
++SII LE AG D P++ ++++++ IQ +M + K F
Sbjct: 1216 FASIIKLVPLE-AGIADPKGLPEELVASRERERDFIQQMMDPSKAKP-----------FK 1263
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLA---FIYEMDT 244
P +K L+ YQ++G+NWL L + L+GIL D+MGLGKT+Q+I ++A ++ + D
Sbjct: 1264 LPIAIK-ATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDY 1322
Query: 245 KG---------PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKN 295
+ P LI P S +W NEF ++AP + V+ Y + G R + +
Sbjct: 1323 EKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVY--AGGPTVRLTLRPQL--- 1377
Query: 296 NKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLT 355
+I+TSY++ D+ ++ ++ + ++DEGH +KN KL + +K I ++RL+LT
Sbjct: 1378 -SDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILT 1436
Query: 356 GTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLI 415
GTP+QNN+ ELWSL +F++P ++F + F + +S T E +
Sbjct: 1437 GTPIQNNVLELWSLFDFLMPGFLGTEKMFQERF---AKPIAASRNSKTSSKEQEAGVLAL 1493
Query: 416 SNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQA 475
LH + PF+LRRLK++VL+ LPPK C + LQK+ Y K K ++K
Sbjct: 1494 EALHKQVLPFMLRRLKEDVLS-DLPPKIIQDYYCELGDLQKQLYMDFTK-KQKNVVEKD- 1550
Query: 476 IKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRL 535
+ N I AD + + M KL + H L+
Sbjct: 1551 --------------IENSEI---------ADGKQHIFQALQYMRKLCN---HPALVLSPN 1584
Query: 536 QNMMIQLRQIVNSTYLFYFPLLEPTDLT-LENLLKTSG--------KLQVLQKLVPELIK 586
+ Q++ + T L ++ L+ L LL G K Q + +
Sbjct: 1585 HPQLAQVQDYLKQTGLDLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVI 1644
Query: 587 KKHKVLIFSQFVSMLDLIED---WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANL 643
+H+ LIF Q MLD++E+ + + R+DGS+ R++ + +F++ S +
Sbjct: 1645 SQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPS-IDC 1703
Query: 644 FLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIE 703
LL+T+ GLG+NLT AD+VI + DWNP DLQAMDRAHRIGQ K V VYR+ T+E
Sbjct: 1704 LLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLE 1763
Query: 704 NVIMTRAVNKRKLEKLVI 721
IM K + V+
Sbjct: 1764 EKIMGLQKFKMNIASTVV 1781
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 241 bits (614), Expect = 4e-63
Identities = 199/705 (28%), Positives = 318/705 (44%), Gaps = 119/705 (16%)
Query: 155 KKKQKKEAIQTLMKRDEPKDEGS-----PSTSLSSSFMQPSFLKNCQLKP----YQKEGL 205
+K+ + +A + +D + EG P S + F ++P YQ +
Sbjct: 226 RKELRDQASASENNKDRGEFEGKDEWLLPHPSKKGQTFEGGFTIPGDIRPHLFRYQVTCV 285
Query: 206 NWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDT-KGPFLIAAPLSTVENWMNEF 264
WL LY GI+ DEMGLGKTIQ ++ L+ ++ + P LI P + ++ W+NEF
Sbjct: 286 QWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIVCPATLMKQWVNEF 345
Query: 265 ARF-APDIPVLKYYNSEGQAARH---------------------------AMMGKFFKN- 295
+ AP V+ + GQ A + ++ KN
Sbjct: 346 HTWWAPLRVVVLHATGSGQRASREKRQYESDASESEAEESKTSIKLRGASSSFHRYAKNL 405
Query: 296 -----NKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSN 350
+G ++IT+Y + +LIL +W + ++DEGH+++N + ++ K+I T N
Sbjct: 406 VESVFTRGH-ILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEISISCKQIRTVN 464
Query: 351 RLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDEL 410
R++L+GTP+QNNL ELW+L +F+ P +F F L + + +
Sbjct: 465 RIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFA---LPINIGGYANASNVQVQT 521
Query: 411 EKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQT 470
L ++ P+LLRR+K +V A LP K E ++ C +TPLQ+K Y+ L+G+
Sbjct: 522 AYKCACMLRDLISPYLLRRMKLDV-AADLPKKSEQVLFCKLTPLQRKAYQDFLQGS---- 576
Query: 471 IQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKEL 530
D Q I N GK + LY + I +++
Sbjct: 577 -----------------------------------DMQKILN---GKRQMLYGIDILRKI 598
Query: 531 LNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHK 590
N +V YL L D + K SGKL+V++ L+ K+ H+
Sbjct: 599 CNHP---------DLVTREYL-----LHKEDYNYGDPEK-SGKLKVIRALLTLWKKQGHR 643
Query: 591 VLIFSQFVSMLDLIE-DWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
L+FSQ MLD++E +L + CR+DGS R++ ++ F+K ++FLL+TR
Sbjct: 644 TLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKN-EYFDVFLLTTR 702
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
GLG+NLT AD VI+FD DWNP D QA +RA R+GQ K V+VYRL TIE I R
Sbjct: 703 VGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHR 762
Query: 710 AVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQS--ANKELVKELSQLL 767
+ K+ L +++ K K+ F + + T T ++ ++++ +
Sbjct: 763 QIFKQFLTNKILKDPKQRRFFKMTDLHDLFTLGDNKTEGTETGSMFLGSERVLRKDNSSR 822
Query: 768 ISNETNQGQA---------DTSKIENSDDILEESEMKELLDRSPP 803
NE A D K NS + E+ + + PP
Sbjct: 823 NGNEAEDIPARDRKKHKIHDKGKKVNSSKVFEKMGIASMEKYKPP 867
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 240 bits (613), Expect = 6e-63
Identities = 190/628 (30%), Positives = 303/628 (47%), Gaps = 69/628 (10%)
Query: 194 NCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK-------- 245
+ L+ YQ+EG+NWL L + L+GIL D+MGLGKT+Q+I ++A + K
Sbjct: 37 SADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQKLFEESGSP 96
Query: 246 ----GPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGV 301
P LI P + +W E + +AP + V Y + A K K V
Sbjct: 97 KFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERA------KIRSKMKKSDV 150
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
++TSY+I D++ ++ W + ++DEGH +KN KL + +K + + +RL+L+GTP+QN
Sbjct: 151 VVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQN 210
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLIS--NLH 419
N+ ELWSL +F++P + F + F ++ + K + E E+ ++ +H
Sbjct: 211 NVLELWSLFDFLMPGFLGTEKTFQERF-----VRPIAASRDAKSSSKERERGTLALEAIH 265
Query: 420 TILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDF 479
+ PF+LRRLK++VLA LPPK C ++ LQ+K L + Q + ++D
Sbjct: 266 KQVLPFMLRRLKEDVLA-DLPPKIIQDYYCDMSDLQRK----LLNDFVSQLNINEELEDD 320
Query: 480 FTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMM 539
T + GT KS + I L + + + EK H + + K+L
Sbjct: 321 ETEKTQ--GTRKKKSQKAHIFQALQYMRKLCNHPALILTEK----HPKRNAIVKQLAKEN 374
Query: 540 IQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVS 599
L + ++ L L + + ++G L V E H+VLIF Q
Sbjct: 375 SGLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDSALTNAVSE-----HRVLIFCQLKD 429
Query: 600 MLDLIED---WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGIN 656
MLD++E + + + R+DGS++ R+E + +F+ S ++ LL+T GLG+N
Sbjct: 430 MLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPS-IDVLLLTTHVGGLGLN 488
Query: 657 LTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
LT AD+VI + DWNP DLQAMDRAHRIGQ K V VYRL +E IM
Sbjct: 489 LTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMG-------- 540
Query: 717 EKLVIQMGKFNTLKKLAFNEQTFLKMNGSSL------ATTTKQSANKELVKELSQLLISN 770
+Q K N + + L G+ T +Q + + KE S+ +
Sbjct: 541 ----LQRFKMNVASTVVNQQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKEESE----D 592
Query: 771 ETNQGQADTSK--IENSDDILEESEMKE 796
+G + TSK +E ++ +ES+ E
Sbjct: 593 AAGRGLSGTSKKALEGLPEMWDESQYDE 620
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 231 bits (589), Expect = 3e-60
Identities = 190/627 (30%), Positives = 304/627 (48%), Gaps = 85/627 (13%)
Query: 196 QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKG-----PFLI 250
+L+ YQ+ G+NWL L + L+GIL D+MGLGKT+Q+I +LA + P L+
Sbjct: 1287 ELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLV 1346
Query: 251 AAPLSTVENWMNEFARFAPDIPVLK---YYNSE-GQAARHAMMGKFFKNNKGEGVIITSY 306
P + +W+ E +F VL+ YY G+ + +G K N +++ SY
Sbjct: 1347 ICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGT--KCN----LVVASY 1400
Query: 307 EIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGEL 366
+ + +DI+ + + ++DEGH +KN K + +KR+ ++RL+L+GTP+QNN+ EL
Sbjct: 1401 DTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLEL 1460
Query: 367 WSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFL 426
WSL +F++P + F + F L SS + + E + LH + PFL
Sbjct: 1461 WSLFDFLMPGFLGTEKQFVQRFSRPIL---SSRDAKSSAKEQEAGVLAMEALHRQVLPFL 1517
Query: 427 LRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEY 486
LRR+K++VL LPPK + C ++PLQ + Y+ DF
Sbjct: 1518 LRRVKEDVLK-DLPPKITQDLLCELSPLQLRLYE-----------------DF------- 1552
Query: 487 IGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMM----IQL 542
SNK ++D ++ + S + +N+ HI + L + LQN+ + L
Sbjct: 1553 ----SNKHLKDCLDKLGDSSSASMVTENLSAKT-----HIFQAL--RYLQNVCNHPKLVL 1601
Query: 543 RQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPEL-------IKKKHKVLIFS 595
RQ T + L + L + ++ S KL L++L+ + +H+ LIF
Sbjct: 1602 RQSEELTKVTSQLALSNSSL---DDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFC 1658
Query: 596 QFVSMLDLIED---WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAG 652
Q +MLD++E L + R+DGS+ + R++ + F+ S ++ LL+T G
Sbjct: 1659 QLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPS-IDVLLLTTMVGG 1717
Query: 653 LGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVN 712
LG+NLT AD+VI + DWNP DLQAMDRAHRIGQ K V VYRL N++E IM
Sbjct: 1718 LGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMG---- 1773
Query: 713 KRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNET 772
+Q K T + E L+ G+S + K+ E +
Sbjct: 1774 --------LQKFKILTANTVVSAENASLQTMGTS-QIFDLFNGGKDKGAESGSSAVQGTA 1824
Query: 773 NQGQADTSKIENSDDILEESEMKELLD 799
+ G + + IEN ++ E + +E D
Sbjct: 1825 SGGMSMNTIIENLPELWSEHQYEEEYD 1851
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 231 bits (588), Expect = 4e-60
Identities = 203/764 (26%), Positives = 338/764 (43%), Gaps = 143/764 (18%)
Query: 85 DEKSAGRKASSEDAAKN-EDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLER 143
++K + ++E +N D D+N + + +S K + E + + D L
Sbjct: 174 EQKDEDFEMATEQMVENLTDEDDNLSDQDYQMSGKESEDDEEEENDDKILKELED--LRF 231
Query: 144 AGQ-----NDEDETPQKKKQKKEAIQTLMKRDEPKD--------EGSPSTSLSSSFMQPS 190
GQ +D DE +++ KK Q D P L+S F P
Sbjct: 232 RGQPGEAKDDGDELYYQERLKKWVKQRSCGSQRSSDLPEWRRPHPNIPDAKLNSQFKIPG 291
Query: 191 FLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDT-KGPFL 249
+ + L YQK + WL LY+ GI+ DEMGLGKTIQ IA +A ++ GP L
Sbjct: 292 EIYSL-LFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPVL 350
Query: 250 IAAPLSTVENWMNEFARFAPDI-PVLKYYNSEGQAARHAM------MGKFFKNNKGEG-- 300
I P + ++ W NEF + P + V+ + G A+ + N+K
Sbjct: 351 IVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFS 410
Query: 301 --------------------------------VIITSYEIIIRDIELILSYQWKFLIVDE 328
++IT+Y + + +L +W++ ++DE
Sbjct: 411 YEDWKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVGLRIHSDKLLKVKWQYAVLDE 470
Query: 329 GHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWF 388
GH+++N + ++ K++ T NR++L+GTP+QNNL ELWSL +FI P +F + F
Sbjct: 471 GHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQF 530
Query: 389 DFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIIT 448
+N+ + I + L ++ P+LLRR+K +V A LP K+E ++
Sbjct: 531 VIP-INIGGYANATN--IQVQTGYKCAVALRDLISPYLLRRVKADV-AKDLPQKKEMVLF 586
Query: 449 CPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQ 508
C +T Q+ Y +E+ S+D
Sbjct: 587 CKLTKYQRSKY---------------------------------------LEFLHSSDLN 607
Query: 509 DIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLL 568
I N GK L+ + I +++ N +++ + + N Y +P
Sbjct: 608 QIQN---GKRNVLFGIDILRKICNH--PDLLDRDTKRHNPDYG------DP--------- 647
Query: 569 KTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW-----SELNNFISCRIDGSMQ 623
K SGK+QV+++L+ K+ +K L+F+Q MLD++E++ +L++ R+DG+
Sbjct: 648 KRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTN 707
Query: 624 NNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAH 683
R+ ++ F+ + ++FLL+TR GLG+NLT A+ +IIFD DWNP D+QA +RA
Sbjct: 708 IKGRQSLVDRFNNESF--DVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAW 765
Query: 684 RIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMN 743
RIGQ + V +YRL +IE I R + K+ L ++ K K+ F +
Sbjct: 766 RIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLF-SLG 824
Query: 744 GSSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIENSDD 787
G + +T + N+E+ K L SK E SDD
Sbjct: 825 GENGYST--EELNEEVQKHTENL-----------KNSKSEESDD 855
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 229 bits (585), Expect = 1e-59
Identities = 129/279 (46%), Positives = 172/279 (61%), Gaps = 19/279 (6%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYE-MDTKG 246
QPS L+ +L+ YQ EGL W+++LY N NGILADEMGLGKTIQ+IAL+A++ E D G
Sbjct: 354 QPSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHG 413
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAAR---HAMMGKFFKNNKGEGVII 303
P LI AP + + NW NEFA +AP I Y S+ + GKF V+I
Sbjct: 414 PHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAGGKF-------NVLI 466
Query: 304 TSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIREL-KRINTSNRLLLTGTPLQNN 362
T Y++I+RD + W ++IVDEGHRLKN C L + L RLLLTGTP+QN+
Sbjct: 467 THYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNS 526
Query: 363 LGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTIL 422
L ELWSLLNF+LP+IF+ F +WF+ S+S + DE E +I+ LH ++
Sbjct: 527 LQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSAS------LTDEEELLIINRLHHVI 580
Query: 423 KPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQ 461
+PFLLRR KK+ + LP K + I+ C ++ QK YYKQ
Sbjct: 581 RPFLLRR-KKSEVEKFLPGKTQVILKCDMSAWQKLYYKQ 618
Score = 169 bits (428), Expect = 2e-41
Identities = 91/201 (45%), Positives = 132/201 (65%), Gaps = 10/201 (4%)
Query: 532 NKRLQNMMIQLRQIVNSTYLF----YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKK 587
+K LQN+ +QLR+ N YLF Y +P +++ SGK ++L +L+P+L K
Sbjct: 634 SKSLQNLTMQLRKCCNHPYLFVGADYNMCKKP------EIVRASGKFELLDRLLPKLKKA 687
Query: 588 KHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLS 647
H++L+FSQ ++DL+E + LN+++ R+DGS + + R +++F++ S +FLLS
Sbjct: 688 GHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLS 747
Query: 648 TRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIM 707
TRA GLG+NL AD++IIFDSDWNPQ+D QA DRAHRIGQ K V V+ L +IE VI+
Sbjct: 748 TRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVIL 807
Query: 708 TRAVNKRKLEKLVIQMGKFNT 728
RA K ++ VIQ G FNT
Sbjct: 808 ERAKQKMGIDAKVIQAGLFNT 828
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 227 bits (578), Expect = 6e-59
Identities = 130/280 (46%), Positives = 177/280 (62%), Gaps = 12/280 (4%)
Query: 188 QPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK-G 246
QPS L +LK YQ GL W+I+LY N LNGILADEMGLGKTIQ+I+L+ + E + G
Sbjct: 408 QPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNG 467
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYN-SEGQAARHAMMGKFFKNNKGEGVIITS 305
PFL+ PLST+ NW EF R+AP I + Y + + A H + + V++T+
Sbjct: 468 PFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQV-----RHSNFQVLLTT 522
Query: 306 YEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSN-RLLLTGTPLQNNLG 364
YE II+D L+ +W ++I+DEGHR+KN KL L +S RL+LTGTPLQNNL
Sbjct: 523 YEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLP 582
Query: 365 ELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKP 424
ELW+LLNF+LP IF+ + F++WF+ N +K+ + +E +I LH +L+P
Sbjct: 583 ELWALLNFVLPRIFNSIKSFDEWFNTPFAN-TGGQDKME--LTEEESLLVIRRLHKVLRP 639
Query: 425 FLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALK 464
FLLRRLKK+V A LP K E +I C ++ LQ+K Y Q K
Sbjct: 640 FLLRRLKKDVEA-ELPDKVEKVIRCQMSGLQQKLYYQMKK 678
Score = 172 bits (437), Expect = 1e-42
Identities = 102/288 (35%), Positives = 163/288 (56%), Gaps = 21/288 (7%)
Query: 533 KRLQNMMIQLRQIVNSTYLF--YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHK 590
K LQN ++QL++I N ++F ++PT + L + SGK ++L +++P+L + H+
Sbjct: 695 KGLQNTVMQLKKICNHPFVFEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHR 754
Query: 591 VLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRA 650
+L+F Q +++++ED+ + R+DGS + + R + + F+ ++ NLFLLSTRA
Sbjct: 755 ILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRA 814
Query: 651 AGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRA 710
GLG+NL AD+VIIFDSDWNP DLQA DRAHRIGQTK V +YRL + ++E I+ RA
Sbjct: 815 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARA 874
Query: 711 VNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVK----ELSQL 766
K ++ VIQ GKF+ K + FL+ S L + N E + EL+++
Sbjct: 875 QYKLDIDGKVIQAGKFDN-KSTPEEREAFLR---SLLENENGEEENDEKGELDDDELNEI 930
Query: 767 LI-----------SNETNQGQADTSKIENSDDILEESEMKELLDRSPP 803
L E + ++ K + + +++ SE+ E R P
Sbjct: 931 LARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSELPEFYQREEP 978
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 226 bits (575), Expect = 1e-58
Identities = 143/419 (34%), Positives = 231/419 (55%), Gaps = 41/419 (9%)
Query: 90 GRKASSEDAAKNEDSDENF----ENDSHTISLKIKKLQEF-VQQSQVYSSIIADTLLERA 144
G SS D+ ++ D + +ND H I + ++ ++ ++ S+ +A+T +A
Sbjct: 606 GNNVSSNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRLRAAENASNALAETRA-KA 664
Query: 145 GQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEG 204
Q D+ +++++++ + +P++ + QP L C LK YQ +G
Sbjct: 665 KQFDDHANAHEEEEEEDELNFQ----------NPTSLGEITIEQPKILA-CTLKEYQLKG 713
Query: 205 LNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM-DTKGPFLIAAPLSTVENWMNE 263
LNWL LY+ G+NGILADEMGLGKT+QSI++LA + E + GPFL+ P ST+ NW+NE
Sbjct: 714 LNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNE 773
Query: 264 FARFAPDIPVLKYYNSEGQAARHAMMGKF-------FKNNKGEGVIITSYEIIIRDIELI 316
++F P +L Y+ G A ++ KF + N V++TSY++++ D +
Sbjct: 774 ISKFLPQFKILPYW---GNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYL 830
Query: 317 LSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPN 376
+W+++I+DE +K+ + L + NRLLLTGTP+QN++ ELW+LL+FI+P+
Sbjct: 831 QKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPS 890
Query: 377 IFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLA 436
+F + FN+WF ++ES +E TK+ +L + LH ILKPF+LRR+KKNV
Sbjct: 891 LFDSHDEFNEWF---SKDIESHAEANTKLNQQQLRR-----LHMILKPFMLRRVKKNV-Q 941
Query: 437 GSLPPKREYIITCPVTPLQKKYYKQALKGNLK---QTIQKQAIKDFFTLNAEYIGTVSN 492
L K E + C +T Q K Y Q LK + I+ A D + +A G+ N
Sbjct: 942 SELGDKIEIDVLCDLTQRQAKLY-QVLKSQISTNYDAIENAATNDSTSNSASNSGSDQN 999
Score = 139 bits (351), Expect = 1e-32
Identities = 79/207 (38%), Positives = 127/207 (61%), Gaps = 10/207 (4%)
Query: 563 TLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSM 622
+++ + S KL+ L +L+ +L + H+VLI+ Q M+DL+E++ + R+DGS
Sbjct: 1290 SMDRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSS 1349
Query: 623 QNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRA 682
+ R++ + ++ + + +FLLSTRA GLGINLTAAD+VI +DSDWNP +D QAMDRA
Sbjct: 1350 KLEDRRDLVHDW-QTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRA 1408
Query: 683 HRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKF--NTLKKLAFNEQTFL 740
HR+GQT+ V VYRL TIE + RA K +++++V++ GK +K + E
Sbjct: 1409 HRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVME-GKTQEKNIKTIEVGE---- 1463
Query: 741 KMNGSSLATTTKQSANKELVKELSQLL 767
N S + +S +++ +KE + L
Sbjct: 1464 --NDSEVTREGSKSISQDGIKEAASAL 1488
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 224 bits (570), Expect = 5e-58
Identities = 175/594 (29%), Positives = 278/594 (46%), Gaps = 81/594 (13%)
Query: 148 DEDETPQK-KKQKKEAIQTLMKRDEPKDEGSPSTS-LSSSFMQPSFLKNCQLKPYQKEGL 205
DED Q+ ++ K +Q KR + +D+ S + F P FL +L YQ+ G+
Sbjct: 457 DEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFK-KLFKYQQTGV 515
Query: 206 NWLITLYENGLNGILADEMGLGKTIQSIALLAFI-----------YEMDTKGPFLIAAPL 254
WL L+ GIL DEMGLGKTIQ IA LA + Y + GP +I P
Sbjct: 516 RWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPT 575
Query: 255 STVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIE 314
+ + W+ EF + P V + + + + + + G++ITSY I +
Sbjct: 576 TVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHC--HGILITSYSYIRLMQD 633
Query: 315 LILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFIL 374
I Y W ++I+DEGH+++N N + K+ T +R++L+G+P+QNNL ELWSL +FI
Sbjct: 634 DISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIF 693
Query: 375 PNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNV 434
P +F + F + + + + L + P+LLRR+K +V
Sbjct: 694 PGKLGTLPVFMEQF---SVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDV 750
Query: 435 -LAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAE---YIGTV 490
++ SLP K E ++ C +T Q K Y+ + + + LN E + G +
Sbjct: 751 KMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSK----------EVYRILNGEMQIFSGLI 800
Query: 491 SNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLN--KRLQNMMIQLRQIVNS 548
+ + I + D+ + ++ L D + ++ KR M++
Sbjct: 801 ALRKI---------CNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIV-------- 843
Query: 549 TYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWS 608
+E+LLK K + +VL+FSQ MLD++E +
Sbjct: 844 ---------------VESLLKIWHK-------------QGQRVLLFSQSRQMLDILEVFL 875
Query: 609 ELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDS 668
+ ++DG+ SR+ I +++ S +FLL+TR GLG+NLT A+ V+I+D
Sbjct: 876 RAQKYTYLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDP 934
Query: 669 DWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQ 722
DWNP D QA +RA RIGQ K V VYRL TIE I R + K+ L V++
Sbjct: 935 DWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 223 bits (567), Expect = 1e-57
Identities = 180/596 (30%), Positives = 291/596 (48%), Gaps = 82/596 (13%)
Query: 196 QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAF--------IYEMDTKGP 247
QL+ YQ+EG+NWL L L+GIL D+MGLGKT+Q+ A++A E+D P
Sbjct: 1443 QLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDELDVF-P 1501
Query: 248 FLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYE 307
+I P + V +W E ++ D+ +L G A + + F N+ VIITSY+
Sbjct: 1502 SIIVCPSTLVGHWAFEIEKYI-DLSLLSVLQYVGSAQDRVSLREQFNNHN---VIITSYD 1557
Query: 308 IIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELW 367
++ +D++ + + W + I+DEGH +KN K+ +K++ +RL+L+GTP+QNN+ ELW
Sbjct: 1558 VVRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELW 1617
Query: 368 SLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLL 427
SL +F++P F + L ++ + + E + LH + PFLL
Sbjct: 1618 SLFDFLMPGFLGTERQFQASY---GKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLL 1674
Query: 428 RRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKD--FFTLNAE 485
RR K+ VL+ LP K C ++P+Q K Y+Q + KQ I D + NA+
Sbjct: 1675 RRTKEEVLS-DLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNAD 1733
Query: 486 YIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQI 545
T ++ + +++ L S H L +K + + L +
Sbjct: 1734 VAPTKASTHVFQALQYLLKLCS-----------------HPLLVLGDKVTEPVASDLAAM 1776
Query: 546 VNSTYLFYFPLLEPTDLTLE-NLLKTSGKLQVLQKLVPE-------------LIKKKHKV 591
+N +D+ E + ++ S KL LQ+++ E L +H+V
Sbjct: 1777 INGC----------SDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQHRV 1826
Query: 592 LIFSQFVSMLDLIED---WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLST 648
LIF+Q ++LD+IE + + + R+DGS+ R E ++ F+ + ++ LL+T
Sbjct: 1827 LIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPT-IDVLLLTT 1885
Query: 649 RAAGLGINLTAADSVIIFDSDWNPQVD-----------LQAMDRAHRIGQTKPVIVYRLY 697
GLG+NLT+AD+++ + DWNP D QAMDRAHR+GQ + V V+RL
Sbjct: 1886 HVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAHRLGQKRVVNVHRLI 1945
Query: 698 CDNTIENVIMTRAVNKRKLEKLVI-----QMGKFNT--LKKLAFNEQTFLKMNGSS 746
T+E +M+ K + VI M NT L L + +T K GSS
Sbjct: 1946 MRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLFASAETSKKGGGSS 2001
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 222 bits (566), Expect = 2e-57
Identities = 171/567 (30%), Positives = 266/567 (46%), Gaps = 89/567 (15%)
Query: 194 NCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKG------- 246
N +L+ YQ++G+NWL L + L+GIL D+MGLGKT+QSI +LA + +
Sbjct: 1263 NAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLA 1322
Query: 247 -----PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGV 301
P L+ P + +W++E +F +Y N + K +
Sbjct: 1323 ECMPLPSLVVCPPTLTGHWVDEVGKFCSR----EYLNPLHYTGPPTERIRLQHQVKRHNL 1378
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
I+ SY+++ DI+ + ++ + I+DEGH +KN KL + +K++ + R++L+GTP+QN
Sbjct: 1379 IVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTI 421
N+ ELWSL +F++P F + L +S + + E + LH
Sbjct: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPIL---ASRDARSSSREQEAGVLAMDALHRQ 1495
Query: 422 LKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFT 481
+ PFLLRR+K++VL LPPK C ++PLQ + Y+ K K + +
Sbjct: 1496 VLPFLLRRMKEDVLQ-DLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDE-------- 1546
Query: 482 LNAEYIGTVSNKSIRDFIEW-KLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMI 540
TVS+ ++ + E KL A H+ + L
Sbjct: 1547 -------TVSSATLSEETEKPKLKATG-----------------HVFQALQ--------- 1573
Query: 541 QLRQIVNSTYLFYFPLLEPTDLTLENL---------LKTSGKLQVLQKLV---------- 581
LR++ N L P T E L ++ + KL L++L+
Sbjct: 1574 YLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGST 1633
Query: 582 ----PELIKKKHKVLIFSQFVSMLDLIED---WSELNNFISCRIDGSMQNNSRKEQIEEF 634
E + +H++LIF Q SMLD++E L + R+DGS+ R + F
Sbjct: 1634 SESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRF 1693
Query: 635 SKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVY 694
+ S ++ LL+T GLG+NLT AD+V+ + DWNP DLQAMDRAHRIGQ + V VY
Sbjct: 1694 NNDPS-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1752
Query: 695 RLYCDNTIENVIMTRAVNKRKLEKLVI 721
RL T+E IM K + VI
Sbjct: 1753 RLITRGTLEEKIMGLQKFKMNIANTVI 1779
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 219 bits (558), Expect = 1e-56
Identities = 180/610 (29%), Positives = 285/610 (46%), Gaps = 87/610 (14%)
Query: 153 PQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNC--------------QLK 198
P K+ ++ Q R +P S Q F KNC L+
Sbjct: 136 PSSKENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLR 195
Query: 199 PYQKEGLNWLITLYE-------NGLNG-ILADEMGLGKTIQSIALLAFIYEMDTKGPF-- 248
P+QKEG+ I LYE NG G ILADEMGLGKT+Q I+L I+ + +GP+
Sbjct: 196 PHQKEGI---IFLYECVMGMRMNGRCGAILADEMGLGKTLQCISL---IWTLQCQGPYGG 249
Query: 249 -------LIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGV 301
LI P S V NW EF ++ + + + + F+ V
Sbjct: 250 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYS------V 303
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
+I SYE+++R ++ I + ++ LI DEGHRLKN K L ++ R++LTGTP+QN
Sbjct: 304 LIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQN 363
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFS-DLNLESSSEKLTKIINDELEKNLISNLHT 420
+L E ++L++F+ P I + K ++ L+ E S+ + K EL + + L
Sbjct: 364 DLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEK----ELGERRAAELTC 419
Query: 421 ILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFF 480
+ F+LRR ++ ++ LPPK E ++ C LQ + Y++ L
Sbjct: 420 LTGLFILRRTQE-IINKYLPPKIENVVFCRPGALQIELYRKLL----------------- 461
Query: 481 TLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMI 540
N + F L +S + IG ++KL + H LL ++
Sbjct: 462 -----------NSQVVRFCLQGLLENSPHL--ICIGALKKLCN---HPCLLFNSIKEKEC 505
Query: 541 QLRQIVNSTYLFYFPLLEPTDLTLENLL---KTSGKLQVLQKLVPEL--IKKKHKVLIFS 595
N Y LL LL K SGKLQVL KL+ + ++ KV++ S
Sbjct: 506 SSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVS 565
Query: 596 QFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGI 655
+ L+++++ + + + R+DG + R++ ++ F+ + S +FLLS++A G+G+
Sbjct: 566 NYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGL 625
Query: 656 NLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRK 715
NL +I++D DWNP D+QAM R R GQ PV +YRL TIE I R ++K+
Sbjct: 626 NLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQG 685
Query: 716 LEKLVIQMGK 725
L V+ + K
Sbjct: 686 LCGAVVDLTK 695
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 215 bits (548), Expect = 2e-55
Identities = 116/298 (38%), Positives = 183/298 (60%), Gaps = 14/298 (4%)
Query: 174 DEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSI 233
D +PST +S +Q L LK YQ +GL WL+ YE GLNGILADEMGLGKTIQ++
Sbjct: 563 DLHNPSTMPVTSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAM 622
Query: 234 ALLAFIYE-MDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAA---RHAMM 289
A LA + E + GPFL+ AP S + NW +E +RF PD+ L Y+ + ++
Sbjct: 623 AFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINP 682
Query: 290 GKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTS 349
+ ++ + G ++ITSY++++ D + +W+++++DE +K+ + + L N
Sbjct: 683 KRMYRRDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCR 742
Query: 350 NRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDE 409
NRLLLTGTP+QNN+ ELW+LL+FI+P +F + + FN+WF +E+ +E
Sbjct: 743 NRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWF---SKGIENHAEH-----GGT 794
Query: 410 LEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNL 467
L ++ ++ LH ILKPF+LRR+KK+V++ L K E + C ++ Q+ +Y QA+K +
Sbjct: 795 LNEHQLNRLHAILKPFMLRRVKKDVVS-ELTTKTEVTVHCKLSSRQQAFY-QAIKNKI 850
Score = 140 bits (352), Expect = 1e-32
Identities = 88/234 (37%), Positives = 126/234 (53%), Gaps = 17/234 (7%)
Query: 567 LLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
LL SGKLQ L L+ L H+VL+F+Q ML+++ED+ + R+DGS
Sbjct: 1201 LLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMD 1260
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R++ + +F + S +FLLSTRA GLGINLTAAD+VI ++SDWNP +DLQAMDRAHR+G
Sbjct: 1261 RRDMVRDFQHR-SDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1319
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSS 746
QTK D T+E I+ RA K +++LV+ G L + L M+ +
Sbjct: 1320 QTK---------DETVEEKILHRASQKNTVQQLVMTGGHVQGDDFLGAADVVSLLMDDAE 1370
Query: 747 LATTTK-------QSANKELVKELSQLLISNETNQGQADTSKIENSDDILEESE 793
A + Q K+ K + + T + D + +N + LEE E
Sbjct: 1371 AAQLEQKFRELPLQDRQKKKTKRIRIDAEGDATLEELEDVDRQDNGQEPLEEPE 1424
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 213 bits (542), Expect = 1e-54
Identities = 130/397 (32%), Positives = 208/397 (51%), Gaps = 37/397 (9%)
Query: 84 IDEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLER 143
I + K + A K E + E + + +K + + Q++++S I R
Sbjct: 147 IKKTERNMKDRFKKAEKEEMERKKREMEEREELRQKRKFEYLLSQTELFSHFILKK--NR 204
Query: 144 AGQNDEDETPQKK------------------KQKKEAIQTLMKRDEPKDEGSPSTSLSSS 185
G + +E +K+ K++ + K+ G + +
Sbjct: 205 CGLSSAEEAERKEIGAGEYNGMKGYEAAMLQKERLREFGAERSTKKFKEGGEVGETTTRY 264
Query: 186 FMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMD-T 244
QPS LK C LK YQ GLNWL++LY+ G+NGILAD+MGLGKT+QSI+LLA +YE +
Sbjct: 265 VPQPSILK-CTLKEYQLRGLNWLVSLYDKGINGILADDMGLGKTVQSISLLAHLYETEEV 323
Query: 245 KGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIIT 304
GPFL+ ST++NW EFARF P V ++ G + + K FKN+ V+IT
Sbjct: 324 PGPFLVVTISSTLDNWAQEFARFLPSFRVCRF---SGSPSERKELKKRFKNSD---VVIT 377
Query: 305 SYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLG 364
+Y+ + D +++ +W+++I+DE +K+ + + L NRLLLTGTP+QN++
Sbjct: 378 TYQTAVSDEKMLKKIKWQYMILDEAQAIKSSMSRRWKTLLSFKARNRLLLTGTPIQNSMQ 437
Query: 365 ELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKP 424
ELW+LL+FI+P +F F+ WF S + + I+ +++ + LH ILKP
Sbjct: 438 ELWALLHFIMPTLFDSLNEFSDWF--------SKEIETSAIMKKTVDEKSLQRLHAILKP 489
Query: 425 FLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQ 461
F+LRR K +V+ L K + + C ++ QK YK+
Sbjct: 490 FMLRRHKSDVI-HELGQKTQIDLYCDLSYRQKVLYKE 525
Score = 148 bits (373), Expect = 4e-35
Identities = 75/158 (47%), Positives = 108/158 (67%), Gaps = 2/158 (1%)
Query: 564 LENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQ 623
L + SGKL VL +L+P+L + H++L++ Q M+DLIED+ + R+DGS++
Sbjct: 718 LNTFISDSGKLVVLDELLPKLKAEGHRLLMYFQMTRMIDLIEDYLVRKGYTYLRLDGSLK 777
Query: 624 NNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAH 683
++R E I ++ + S +FLLSTRA GLGINLTAAD+V+ +DSDWNP D QAMDRAH
Sbjct: 778 ASARAEVIRDW--QASDKFIFLLSTRAGGLGINLTAADTVVFYDSDWNPTADQQAMDRAH 835
Query: 684 RIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVI 721
R+GQT+ V VYRL T+E ++ A K +++K+VI
Sbjct: 836 RLGQTRDVTVYRLITRGTVEEKVLESANRKDEIQKMVI 873
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 210 bits (535), Expect = 6e-54
Identities = 136/374 (36%), Positives = 201/374 (53%), Gaps = 34/374 (9%)
Query: 100 KNEDSDENFE-NDSHTISLKIKKLQ-EFVQQSQVYSSIIADTLLERAGQ--NDEDETPQK 155
K E+SD + + +DS ++ ++ E +++ QV +S ERAG + ++E
Sbjct: 608 KGEESDGDLDLDDSEDFTVNSSSVEGEELEKDQVDNSAAT---FERAGDFVHTQNENRDD 664
Query: 156 KKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENG 215
K +E +T ++ ++ P PS L+ L+ YQK+GLNWL +LY N
Sbjct: 665 IKDVEEDAETKVQEEQLSVVDVPV---------PSLLRG-NLRTYQKQGLNWLASLYNNH 714
Query: 216 LNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVL 274
NGILADEMGLGKTIQ+I+LLA++ E + GP LI P S + NW EF RFAP VL
Sbjct: 715 TNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVL 774
Query: 275 KYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKN 334
YY S Q K + V I SY+++++D +W+++++DE H +KN
Sbjct: 775 TYYGSPQQRKEKR---KGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKN 831
Query: 335 INCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNI---------FSDFEIFN 385
+ L NT RLLLTGTPLQNNL ELWSLL F++P F+D + F
Sbjct: 832 FRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQ 891
Query: 386 KWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREY 445
+WF ++ E D+ K ++ LH +L+P+LLRRLK +V +P K E+
Sbjct: 892 QWF---GRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADV-EKQMPAKYEH 947
Query: 446 IITCPVTPLQKKYY 459
I+ C ++ Q+ Y
Sbjct: 948 IVYCKLSKRQRFLY 961
Score = 142 bits (357), Expect = 3e-33
Identities = 89/255 (34%), Positives = 143/255 (55%), Gaps = 14/255 (5%)
Query: 572 GKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQI 631
GKLQ L L+ +L H+ LIF+Q +LD++E + + ++ R+DG+ + R+
Sbjct: 1246 GKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILT 1305
Query: 632 EEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPV 691
E F+ S+ +F+LS+R+ GLGINLT AD+VI +DSDWNP +D Q DR HRIGQT+ V
Sbjct: 1306 ERFNTD-SRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDV 1364
Query: 692 IVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTT 751
+YR ++TIE+ I+ +A KR+L+ +VIQ G F T F++ + + GS L
Sbjct: 1365 HIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTT---DYFSKLSVRDLLGSELPENA 1421
Query: 752 KQSANKELVKELSQLLISNETNQGQADTSKIENSDDI------LEESEM-KELLDRSPPA 804
+K L+ + + + + Q + ++ E+ DD+ + E E+ + D S
Sbjct: 1422 -SGGDKPLIADAD--VAAKDPRQLERLLAQAEDEDDVKAANLAMREVEIDNDDFDESTEK 1478
Query: 805 YIPHETQFNHIRLFE 819
+E + NH L E
Sbjct: 1479 KAANEEEENHAELDE 1493
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 207 bits (528), Expect = 4e-53
Identities = 134/380 (35%), Positives = 200/380 (52%), Gaps = 31/380 (8%)
Query: 85 DEKSAGRKASSEDAAKNEDSDENFEN---DSHTISLKIKKLQEFVQQSQVYSSIIADTLL 141
+++S A SED+ DSDEN + D + L KL + S + T
Sbjct: 21 EDESESSFAVSEDSIV--DSDENRQQADLDDDNVDLTECKLDP-----EPCSENVEGTFH 73
Query: 142 ERAGQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQ 201
E A ND+D + + A + +P +T + + FL L+ YQ
Sbjct: 74 EVAEDNDKDSSDKIADAAAAA-----RSAQPTGFTYSTTKVRTKL---PFLLKHSLREYQ 125
Query: 202 KEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLSTVENW 260
GL+WL+T+YE LNGILADEMGLGKTI +IALLA + + GP LI P S + NW
Sbjct: 126 HIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNW 185
Query: 261 MNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQ 320
EF ++ P +L Y+ G A + + + V IT+Y ++I+D ++ +
Sbjct: 186 ETEFLKWCPAFKILTYF---GSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKK 242
Query: 321 WKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSD 380
WK+LI+DE H +KN + + L N+ R+LLTGTPLQN+L ELWSL++F++P++F
Sbjct: 243 WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQS 302
Query: 381 FEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLP 440
+ F WF + EK + K +I LH +L+PFLLRRLK++V LP
Sbjct: 303 HQEFKDWFCNPIAGMVEGQEK--------INKEVIDRLHNVLRPFLLRRLKRDV-EKQLP 353
Query: 441 PKREYIITCPVTPLQKKYYK 460
K E++I C ++ Q+ Y+
Sbjct: 354 SKHEHVIFCRLSKRQRNLYE 373
Score = 143 bits (360), Expect = 1e-33
Identities = 90/229 (39%), Positives = 131/229 (56%), Gaps = 7/229 (3%)
Query: 572 GKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQI 631
GKLQ L L+ +L H+ LIF+Q MLD++E + L + R+DGS R+ +
Sbjct: 660 GKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLM 719
Query: 632 EEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPV 691
+ F+ K LF+LSTR+ G+GINL AD+VI +DSDWNP +D QA DR HRIGQT+ V
Sbjct: 720 QRFNTN-PKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREV 778
Query: 692 IVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTT 751
+YRL ++TIE I+ +A KR L+ LVIQ G++NT F + +++ A TT
Sbjct: 779 HIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNT---EFFKKLDPMELFSGHKALTT 835
Query: 752 KQSANKELVKEL-SQLLISNETNQGQADTSKIENSDDILEESEMKELLD 799
K KE K + + +SN + ++ E L+ E +E +D
Sbjct: 836 KD--EKETSKHCGADIPLSNADVEAALKQAEDEADYMALKRVEQEEAVD 882
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 207 bits (527), Expect = 5e-53
Identities = 138/385 (35%), Positives = 201/385 (51%), Gaps = 39/385 (10%)
Query: 85 DEKSAGRKAS-------SEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIA 137
+E+++G AS SEDA +DE E+D + + + +E QS+ A
Sbjct: 317 EEETSGSSASEESESEESEDAQSQSQADEEEEDDDFGVEYLLARDEE---QSE------A 367
Query: 138 DTLLERAGQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQL 197
D AG P KKE + + +G + P L+ QL
Sbjct: 368 D-----AGSGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRG-QL 421
Query: 198 KPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLST 256
+ YQ GL+WL+T+YE LNGILADEMGLGKTIQ+I+LLA + E GP LI P S
Sbjct: 422 REYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSV 481
Query: 257 VENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELI 316
+ NW E R+ P +L YY + Q R + K N V ITSY+++++D +
Sbjct: 482 MLNWEMELKRWCPSFKILTYYGA--QKERKLKRQGWTKPNAFH-VCITSYKLVLQDHQAF 538
Query: 317 LSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPN 376
W++LI+DE +KN + + L N+ RLLLTGTPLQN+L ELWSL++F++P+
Sbjct: 539 RRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPH 598
Query: 377 IFSDFEIFNKWFDFSDLNLESSSEKLTKII--NDELEKNLISNLHTILKPFLLRRLKKNV 434
+F F +WF S LT +I + E + L+ LH +L+PFLLRR+K +V
Sbjct: 599 VFQSHREFKEWF----------SNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDV 648
Query: 435 LAGSLPPKREYIITCPVTPLQKKYY 459
+P K E++I C ++ Q+ Y
Sbjct: 649 -EKQMPKKYEHVIRCRLSKRQRCLY 672
Score = 142 bits (358), Expect = 2e-33
Identities = 81/224 (36%), Positives = 128/224 (56%), Gaps = 5/224 (2%)
Query: 572 GKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQI 631
GKLQ L L+ +L + H+VLIF+Q MLD++E + + + R+DGS + R+ +
Sbjct: 1784 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 1843
Query: 632 EEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPV 691
E F+ + F+LSTR+ G+G+NLT AD+V+ +DSDWNP +D QA DR HRIGQT+ V
Sbjct: 1844 ERFNAD-KRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 1902
Query: 692 IVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTT 751
+YRL + T+E I+ +A KR L + I+ G F T F +QT ++ L +
Sbjct: 1903 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTT---AYFKQQTIRELFDMPLEEPS 1959
Query: 752 KQSANKELVKELSQLLISNETNQGQADTSKIENSDDILEESEMK 795
S +E + + S +T+ + + E+ +DI ++ K
Sbjct: 1960 SSSV-PSAPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAK 2002
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 206 bits (523), Expect = 2e-52
Identities = 121/286 (42%), Positives = 167/286 (58%), Gaps = 22/286 (7%)
Query: 191 FLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTK-GPFL 249
FL QL+ YQ GL+W++TLYE LNGILADEMGLGKTIQ+I+LLA + ++ GP L
Sbjct: 591 FLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHL 650
Query: 250 IAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEII 309
I P S + NW EF ++ P + +L Y+ G A A K + V ITSY+ +
Sbjct: 651 IVVPTSVILNWEMEFKKWCPALKILTYF---GTAKERAEKRKGWMKPNCFHVCITSYKTV 707
Query: 310 IRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSL 369
+DI W++LI+DE +KN + + L + RLLLTGTPLQN+L ELWSL
Sbjct: 708 TQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSL 767
Query: 370 LNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKN--LISNLHTILKPFLL 427
++F++P IFS + F WF S LT ++ +E N LI LH +L+PF+L
Sbjct: 768 MHFLMPTIFSSHDDFKDWF----------SNPLTGMMEGNMEFNAPLIGRLHKVLRPFIL 817
Query: 428 RRLKKNVLAGSLPPKREYIITCPVTPLQKKYY-----KQALKGNLK 468
RRLKK V LP K E+I+ C ++ Q+ Y +++ K NLK
Sbjct: 818 RRLKKEV-EKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKENLK 862
Score = 133 bits (334), Expect = 1e-30
Identities = 76/225 (33%), Positives = 127/225 (55%), Gaps = 2/225 (0%)
Query: 572 GKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQI 631
GKLQ L L+ +L KH+ LIF+Q MLD+++ + + + R+DG+ R+ +
Sbjct: 1239 GKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMM 1298
Query: 632 EEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPV 691
E F+ K F+LSTR+ G+G+NLT AD+VI +DSDWNP +D QA DR HRIGQT+ V
Sbjct: 1299 ERFNAD-PKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNV 1357
Query: 692 IVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTT 751
+YRL + TIE I+ +A KR+L +L I F T + ++ +G ++ T
Sbjct: 1358 SIYRLISERTIEENILRKATQKRRLGELAIDEAGF-TPEFFKQSDSIRDLFDGENVEVTA 1416
Query: 752 KQSANKELVKELSQLLISNETNQGQADTSKIENSDDILEESEMKE 796
+ ++ ++ ++ ++ + +KI ++ ++ +E E
Sbjct: 1417 VADVATTMSEKEMEVAMAKCEDEADVNAAKIAVAEANVDNAEFDE 1461
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 202 bits (513), Expect = 2e-51
Identities = 160/548 (29%), Positives = 265/548 (48%), Gaps = 74/548 (13%)
Query: 197 LKPYQKEGLNWLITLYENGL----NG-ILADEMGLGKTIQSIALLAFIYEMDTKG----- 246
L+P+Q EG+ +L + NG I+ADEMGLGKT+Q IALL + + +
Sbjct: 264 LRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTI 323
Query: 247 -PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEG----- 300
+I P S V+NW NE ++ + + +G++++ ++ + G
Sbjct: 324 EKAIITCPSSLVKNWANELVKWLGKDAITPFI-LDGKSSKQELIMALQQWASVHGRQVTR 382
Query: 301 -VIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPL 359
V+I SYE + +E + + + L+ DEGHRLKN + L ++N R++L+GTP+
Sbjct: 383 PVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPI 442
Query: 360 QNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLH 419
QN+L E +SLLNF P + + F K ++ L + N + + ++ L
Sbjct: 443 QNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAK---LAELA 499
Query: 420 TILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDF 479
I+ F++RR ++L+ LP K E+++ C ++ Q YK
Sbjct: 500 KIVNRFIIRR-TNDILSKYLPVKYEHVVFCNLSEFQLSLYKH------------------ 540
Query: 480 FTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMM 539
F + E NK +R SQ P IG ++K+ + H +LLN
Sbjct: 541 FITSPEI-----NKILR-------GTGSQ--PLKAIGLLKKICN---HPDLLN------- 576
Query: 540 IQLRQIVNSTYLFYFPLLEPTDL-----TLENLLKTSGKLQVLQKLVPELIKK-KHKVLI 593
L + + + P P +L +++ L SGK+ VL++++ ++ ++ K+++
Sbjct: 577 --LTEDLEGCEALFPPGFIPRELRGRDRNIDSSL--SGKMLVLERMLYQIKQETDDKIVL 632
Query: 594 FSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGL 653
S + S LDL E + + R+DG+M N R+ ++ F+ A +FLLS++A G
Sbjct: 633 ISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGC 692
Query: 654 GINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNK 713
GINL A+ +I+FD DWNP D QA+ R R GQ K VYR TIE I R +K
Sbjct: 693 GINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHK 752
Query: 714 RKLEKLVI 721
+ L V+
Sbjct: 753 QSLSSCVV 760
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 200 bits (508), Expect = 8e-51
Identities = 178/662 (26%), Positives = 302/662 (44%), Gaps = 109/662 (16%)
Query: 87 KSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTL--LERA 144
+ R++ S + +E+SD++ E + S K + +S I +D + A
Sbjct: 81 RKKSRRSDSSEFVPSEESDDDEEYEVLEKSRKKGRKSGSSSRSSSDDFIESDDNEDYKSA 140
Query: 145 GQNDEDETPQKK----KQKKEA----IQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQ 196
G D++++ K K K EA + T M E + S +++ +
Sbjct: 141 GLLDDNDSKNFKARIDKLKPEATSELVDTRMVTSEEYGKSSKPWKVNAGVWN-------K 193
Query: 197 LKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYE----------MDTKG 246
L +Q+EG+ WL ++ GILADEMGLGKTIQS+ L I E +DT
Sbjct: 194 LHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTTGLDTA- 252
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFF-------KNNKGE 299
LI +S + W+ E ++ P V ++ + +G F K
Sbjct: 253 --LIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVGSIFRKLQRRRKEYPDG 310
Query: 300 GVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPL 359
+I+T+Y + + + I+ + W+ +I+DEGH ++N N K ++++ T+ R +LTGTP
Sbjct: 311 AIILTTYSLFTKLKKPIVKHLWQVVILDEGHYIRNENTKCSIAMRKLMTTQRFILTGTPF 370
Query: 360 QNNLGELWSLLNFILPNIFSDFEIFNKWFDF---SDLNLESSSEKLTKIINDELEKNLIS 416
QN L E W L++F+ P SD F++ F + NL S E K +
Sbjct: 371 QNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAKAYE------CLV 424
Query: 417 NLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAI 476
LH +KP +LRRL+++ +K+ L+ KQ I
Sbjct: 425 ALHIAVKPLILRRLQED-------------------------HKEVLQLPEKQEI----- 454
Query: 477 KDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQ 536
L+ E +S + R ++E+ S H E++ +RL+
Sbjct: 455 ----VLSCE----LSKRQRRLYMEYGNS--------------------HQVNEIIERRLK 486
Query: 537 NMMIQLRQIVN-STYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKK-HKVLIF 594
+ + + N + + L P ++ K SGK+++ KL + K ++V++F
Sbjct: 487 -AFVGINHLTNICNHPGIYRSLSPASPKFGSI-KDSGKVEMTFKLFDDWFKSPTNRVILF 544
Query: 595 SQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLG 654
+Q +++ ++E + + G+ +R + I++F S +FL++TRA GLG
Sbjct: 545 TQRRTVITMMEYFLAEKGIKCVSLTGADSAAARPKIIKKFEDDVS-IKVFLMTTRAGGLG 603
Query: 655 INLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKR 714
+NLT A+ VIIFD DWNPQ D QA +R +R+GQT V +YRL + TIE++ + V K
Sbjct: 604 LNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQTNDVAIYRLVSNGTIEDLKFFKQVQKE 663
Query: 715 KL 716
L
Sbjct: 664 NL 665
Score = 75.1 bits (183), Expect = 4e-13
Identities = 106/490 (21%), Positives = 201/490 (40%), Gaps = 75/490 (15%)
Query: 301 VIITSYEIIIRDIELILSYQWKFLIVDEG-----HRLKNINCKLIRELKRINTSNRLLLT 355
V++T++ + + I+ +QW+ + +D+G +++N I +K++ T NR + T
Sbjct: 1158 VLLTTFAEFGKHEKAIVDHQWQLVYLDQGLFEMTRQMRN----QIEGMKKLKTPNRFIFT 1213
Query: 356 GTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFD---FSDLNLESSSEKLTKIINDELEK 412
T +++ L ELW ++F+ P SD++ F F L+++ E+ +
Sbjct: 1214 DTSVRDRLEELWWNVDFVFPGRLSDYKTFQTNFQNVIEIGCRLDATPEEASTAY------ 1267
Query: 413 NLISNLHTILKPFLLRRLKKNV---LAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQ 469
I LH LKP +L RL KN K+E + V K+Y++Q L
Sbjct: 1268 ECIVALHVALKPLILSRLIKNPNDWFCRREISKKE-VEHIKVRIFVKQYFEQTL------ 1320
Query: 470 TIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGK---MEKLYDMHI 526
FF + I +S + R +K S + Q I + ++KL D+
Sbjct: 1321 ---------FF---QDIICPLSKRQRRCLKIYKRSDEVQGILRQSSAACVGLKKLTDICD 1368
Query: 527 HKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPE-LI 585
H + + + T F ++ SGK++++ +L+ L
Sbjct: 1369 HPGI-----------HKGVTPETKKF-------------GSIEDSGKVRIVFQLLDMWLG 1404
Query: 586 KKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFL 645
KV+IF+Q + ++E + + C +N +E + + + + + L
Sbjct: 1405 TPGAKVVIFTQRRQVAVMLEHFMKQKRIAYCSF-LKAKNAYDRENVVNYFENTTDVQILL 1463
Query: 646 LSTRAAGLGINLTAADSVIIFDSDWNPQVDLQ-AMDRAHRIGQTKPVIVYRLYCDNTIEN 704
+ LG+ L A+ VIIFD +WNP D++ + + + + V V RL + T+E+
Sbjct: 1464 APSIMFKLGMQLKKANKVIIFDPEWNPDSDVKHTREMSFLTKKVEDVTVVRLVSEGTVED 1523
Query: 705 VIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTF-----LKMNGSSLATTTKQSANKEL 759
+ + + L ++ KF E+ +K + + N+ L
Sbjct: 1524 SSYFKKLWESGLASRLLSDPKFEPFVPRTTLEEFLTVRPKIKAGKNDMPVVKSHMKNRLL 1583
Query: 760 VKELSQLLIS 769
E QLL S
Sbjct: 1584 EYEDKQLLSS 1593
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 199 bits (507), Expect = 1e-50
Identities = 156/513 (30%), Positives = 249/513 (48%), Gaps = 90/513 (17%)
Query: 196 QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAF-IYEMDTKGPFLIAAPL 254
+L+ YQ EG+ WL LY LNGILAD+MGLGKT+Q + L IY+ + K L+ P
Sbjct: 796 KLRDYQMEGVKWLNFLYSFSLNGILADDMGLGKTLQVLTFLCSEIYKTNRK--VLVICPS 853
Query: 255 STVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIE 314
S +W +E +F P + Y + ++I+SYE D
Sbjct: 854 SLTGHWKSEVKKFFPFVAAEIYKREDRDTY---------------SILISSYETFRNDYL 898
Query: 315 LILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFIL 374
+ W +++VDEGH L+N L + I S +++LTGTP+ N++ +L SL NF++
Sbjct: 899 NFIEKDWFYVVVDEGHVLRNKQTILYSRMNMIRCSRKMVLTGTPVHNSVEDLISLFNFLM 958
Query: 375 PNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNV 434
PN + ++ LN++ S ++ K + LH + PF+LRRLK +V
Sbjct: 959 PNYIGPEK------EYGSLNVKMSDSEIEK------THKRLDLLHRKVLPFILRRLKIDV 1006
Query: 435 LAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKS 494
L LPPK IT + P+Q+K Y++ + + K+++ D EY G V K+
Sbjct: 1007 LK-DLPPKIIRDITVELGPVQEKLYRE-----IDEKGGKESLGD---AELEY-GKVDQKN 1056
Query: 495 IRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYF 554
+ +K + D + +IG + ++ + L + + + + S L +F
Sbjct: 1057 ----VGFKRTRD-LFLAVSHIGHFKDSTEVSCKVKALEDIIS---LCGGEDLGSKILIFF 1108
Query: 555 PLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFI 614
DL +++++ KK+K F
Sbjct: 1109 QFKSTIDLVIKDIM------------------KKYK----------------------FK 1128
Query: 615 SCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQV 674
R+DGS+ + +R + EEF+ G+ LF L+T+ GLG+NLT AD+V++++ DWNP
Sbjct: 1129 YSRLDGSVPSAARTKIAEEFN-TGTTQMLF-LTTQVGGLGLNLTGADTVVMYEHDWNPFN 1186
Query: 675 DLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIM 707
DLQAMDRAHRIGQ + V V+R NT+E +M
Sbjct: 1187 DLQAMDRAHRIGQKRTVNVFRFIARNTLEEKVM 1219
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 197 bits (502), Expect = 4e-50
Identities = 157/545 (28%), Positives = 253/545 (45%), Gaps = 78/545 (14%)
Query: 197 LKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPF----LIAA 252
L+ YQ EG+ W+ L GL+GILAD+MGLGKT+Q++ +A + D F LI
Sbjct: 982 LREYQLEGITWIRFLRTYGLHGILADDMGLGKTLQTMCSIALSVDRDEMSEFHRCSLIVC 1041
Query: 253 PLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRD 312
P + V++W E+ RF P + K G + + +Y+ +
Sbjct: 1042 PRTLVDHWCLEWNRFFP---------------QRVPASKNLTRCHGAEICVIAYDEL--K 1084
Query: 313 IELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNF 372
++ W ++++DEGH ++N + + ++ +RL+L+GTP+QN+ +LWSL +
Sbjct: 1085 TAYMMDRVWNYIVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAW 1144
Query: 373 ILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKN--LISNLHTILKPFLLRRL 430
++P + F F + +L K +L+ IS LH ++ PF++RRL
Sbjct: 1145 LMPGYLGSEKQFRSQFLKKIMKC-----RLPKANEADLKAGSAAISQLHKLVLPFVMRRL 1199
Query: 431 KKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTV 490
K VL LP K C +T QK+ Y+ + D T + E +G
Sbjct: 1200 KTEVLK-ELPEKNVQDYECELTEDQKEIYR--------------FVVDRCTSSQEDVGL- 1243
Query: 491 SNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRL---QNMMIQLRQIVN 547
S+ I + D + +D + K + + +L+K L M L+Q+
Sbjct: 1244 --SSLVTLITLRKLTDHTKLVHDTLAK------IGAPQYILSKALAAKSGKMEALKQL-- 1293
Query: 548 STYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW 607
L + + D +E G L+ H+ LIF Q+ + L+ D
Sbjct: 1294 ---LIECEICKNPDEEVEQPEDLGG-----------LVASGHRALIFCQWKTSAKLVSDA 1339
Query: 608 SELNNFIS----CRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSV 663
+ F S +DGS+ R + + F+ + ++ +L+T G+G+NLT AD+V
Sbjct: 1340 LKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFN-EDKTIDVLILTTHVGGVGLNLTGADTV 1398
Query: 664 IIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQM 723
I D DWNP DLQA+DRAHR+GQT+ V VYRL T+E +M+ A K KL +
Sbjct: 1399 IFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLITQGTVEEKVMSLA--KFKLNTAQALI 1456
Query: 724 GKFNT 728
G NT
Sbjct: 1457 GADNT 1461
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 197 bits (501), Expect = 5e-50
Identities = 156/546 (28%), Positives = 256/546 (46%), Gaps = 73/546 (13%)
Query: 197 LKPYQKEGLNWLITLYEN---GLNG-ILADEMGLGKTIQSIALLAFIYEMDTKGP----- 247
L+P+Q+EG+ ++ E NG I+ADEMGLGKT+Q + L ++ + +GP
Sbjct: 156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTL---VWTLLRQGPECKPT 212
Query: 248 ---FLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMG----KFFKNNKGEG 300
++ +P S V+NW EF ++ L EG + + G
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKWLHGR--LLCLPMEGGTKENTIRALEQFSMTSARLGTP 270
Query: 301 VIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQ 360
V++ SYE E++ Y+ +I DEGHRLKN + + L + T R+LL+GTP+Q
Sbjct: 271 VLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQ 330
Query: 361 NNLGELWSLLNFILPNIFSDFEIFNKWFDFSDL---NLESSSEKLTKIINDELEKNLISN 417
N+L E +SL+NF+ P + +F + F+ + L N +S+ ++ + I E
Sbjct: 331 NDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQE------ 384
Query: 418 LHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGN-LKQTIQKQAI 476
L ++ ++RR + +L LP K E +I +T +Q + Y LK + +++++
Sbjct: 385 LIGLVDQCIIRRTNQ-ILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNE 443
Query: 477 KDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQ 536
K T A+ S D I KL+A + N
Sbjct: 444 KASLTALADITTLKKICSHPDLIYEKLTAREKGFENS----------------------- 480
Query: 537 NMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPEL-IKKKHKVLIFS 595
+ ++ S Y +P DL E SGK +L ++ + + KV++ S
Sbjct: 481 ------QNVLPSNY-------KPKDLNPE----LSGKFMLLDFMLAAIRAEGNDKVVLIS 523
Query: 596 QFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGI 655
+ LDL E + + R+DG+M R + ++ F+ S + LF+LS++A G G+
Sbjct: 524 NYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGL 583
Query: 656 NLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRK 715
NL A+ + +FD DWNP D QAM R R GQ KP +YRL +IE I+ R +K+
Sbjct: 584 NLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKS 643
Query: 716 LEKLVI 721
L +I
Sbjct: 644 LSSTII 649
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 197 bits (500), Expect = 7e-50
Identities = 119/275 (43%), Positives = 167/275 (60%), Gaps = 30/275 (10%)
Query: 531 LNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTL---ENLLKTSGKLQVLQKLVPELIKK 587
+N +LQN+M+ LR+ N YL +P+ +P E L+ SGK +L +++PEL K+
Sbjct: 66 VNLKLQNIMMLLRKCCNHPYLIEYPI-DPVTQEFKIDEELVTNSGKFLILDRMLPELKKR 124
Query: 588 KHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLS 647
HKVL+FSQ SMLD++ D+ L +F R+DGSM + R++ + F+ + +FL+S
Sbjct: 125 GHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTD-PEVFIFLVS 183
Query: 648 TRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIM 707
TRA GLGINLTAAD+VII+DSDWNPQ DLQA DR HRIGQTKPV+VYRL NTI+ I+
Sbjct: 184 TRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 243
Query: 708 TRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLL 767
RA KRKLEKL+I F G S +K + KEL +LL
Sbjct: 244 ERAAAKRKLEKLIIHKNHFK---------------GGQSGLNLSKNFLDP---KELMELL 285
Query: 768 ISNETNQGQADTSKIENS-DDILEESEMKELLDRS 801
S + + +I+ S + ++ + +++ LLDRS
Sbjct: 286 KSRDYER------EIKGSREKVISDKDLELLLDRS 314
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 192 bits (489), Expect = 1e-48
Identities = 156/541 (28%), Positives = 250/541 (45%), Gaps = 63/541 (11%)
Query: 197 LKPYQKEGLNWLITLYEN----GLNG-ILADEMGLGKTIQSIALLAFIYEMDTK-----G 246
L+P+Q+EG+ +L + G +G I+ADEMGLGKT+Q I L+ + +
Sbjct: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
Query: 247 PFLIAAPLSTVENWMNEFARFAPD-IPVLKYYNSEGQAARHAMMGKFFKNNKGEGV---- 301
++ +P S V+NW NE ++ I L + G F N +G V
Sbjct: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEG--FMNQRGARVSSPI 270
Query: 302 IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
+I SYE + ++ +I DEGHRLKN + + L +NTS R+L++GTP+QN
Sbjct: 271 LIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQN 330
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTI 421
+L E +SL++F+ I F K F +L + + + +L + + L +I
Sbjct: 331 DLLEYFSLVHFVNSGILGTAHEFKKHF---ELPILKGRDAAASEADRQLGEERLRELTSI 387
Query: 422 LKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFT 481
+ L+RR ++L+ LP K E ++ C +TPLQ + YK+ L+
Sbjct: 388 VNRCLIRR-TSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLR----------------- 429
Query: 482 LNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQ 541
K + +E K+S S +I ++KL + H L+ +
Sbjct: 430 ---------QAKPAEELLEGKMSVSSL----SSITSLKKLCN---HPALIYDKCVE---- 469
Query: 542 LRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQK-LVPELIKKKHKVLIFSQFVSM 600
++ L P + + SGK+ VL L + KV++ S +
Sbjct: 470 ----EEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQT 525
Query: 601 LDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAA 660
LDL E ++ R+DG+M R + +E F+ S +F+LS++A G G+NL A
Sbjct: 526 LDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 661 DSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
+ +++FD DWNP D QAM R R GQ K +YRL TIE I R +K+ L V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
Query: 721 I 721
+
Sbjct: 646 V 646
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 192 bits (488), Expect = 2e-48
Identities = 163/571 (28%), Positives = 263/571 (45%), Gaps = 108/571 (18%)
Query: 173 KDEGSPS-TSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQ 231
+DEGS + T L+ S+ P + L P+Q+EGLNWL +L+ G GIL D+MGLGKT+Q
Sbjct: 353 EDEGSITLTGLNLSYTLPGKIAT-MLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQ 411
Query: 232 SIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGK 291
+ LA ++ L+ AP + + +WM E A +YY + +A + +
Sbjct: 412 ICSFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHI 471
Query: 292 FFKNNKGEGVIITSYEIIIRDIELILS------------YQWKFLIVDEGHRLKNINCKL 339
+G+G+++T+Y+I+ + + + +W ++I+DEGH +KN N +
Sbjct: 472 L----QGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQR 527
Query: 340 IRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSS 399
+ L I +S+R++++GTP+QNNL L FN++ + + +
Sbjct: 528 AKSLLEIPSSHRIIISGTPIQNNLKAL----------------SFNRFKQNYEHYILRGT 571
Query: 400 EKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLA-----GSLPPKREYIITCPVTPL 454
+K + + NL ++PF LRRLK V L K E ++ +T
Sbjct: 572 DKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLT-- 629
Query: 455 QKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDN 514
Q+Q + F LN+E + + + S P
Sbjct: 630 ---------------ACQRQLYEAF--LNSEIVLSAFDGS----------------PLAA 656
Query: 515 IGKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKL 574
+ ++K+ D H LL KR +LE D TL + +G
Sbjct: 657 LTILKKICD---HPLLLTKRAAE-----------------DVLEGMDSTLTQ--EEAGVA 694
Query: 575 QVLQKLVPELIK------KKHKVLIFSQFV-SMLDLIEDWSELNNFISCRIDGSMQNNSR 627
+ L + + + K + F+ S+LD + N + RIDG+ + R
Sbjct: 695 ERLAMHIADNVDTDDFQTKNDSISCKLSFIMSLLDSLTS----NGYSFLRIDGTTKAPDR 750
Query: 628 KEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQ 687
+ +EEF ++G A +FLL+++ GLG+ LT AD VI+ D WNP D Q++DRA+RIGQ
Sbjct: 751 LKTVEEF-QEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 809
Query: 688 TKPVIVYRLYCDNTIENVIMTRAVNKRKLEK 718
TK VIVYRL T+E I + V K L K
Sbjct: 810 TKDVIVYRLMTSATVEEKIYRKQVYKGGLFK 840
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 191 bits (484), Expect = 5e-48
Identities = 118/286 (41%), Positives = 169/286 (58%), Gaps = 11/286 (3%)
Query: 539 MIQLRQIVNSTYLFYFPLLEPTDLTL---ENLLKTSGKLQVLQKLVPELIKKKHKVLIFS 595
M+ LR+ N YL +P+ +P E L+ SGK +L +++PEL K+ HKVL+FS
Sbjct: 1 MMLLRKCCNHPYLIEYPI-DPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFS 59
Query: 596 QFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGI 655
Q SMLD++ D+ L +F R+DGSM + R++ + F+ + +FL+STRA GLGI
Sbjct: 60 QMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTD-PEVFIFLVSTRAGGLGI 118
Query: 656 NLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRK 715
NLTAAD+VII+DSDWNPQ DLQA DR HRIGQTKPV+VYRL NTI+ I+ RA KRK
Sbjct: 119 NLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRK 178
Query: 716 LEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQG 775
LEKL+I F + + FL + L K + +K + +IS++ +
Sbjct: 179 LEKLIIHKNHFKGGQSGLNLSKNFL--DPKELMELLKSRDYEREIKGSREKVISDKDLEL 236
Query: 776 QADTS----KIENSDDILEESEMKELLDRSPPAYIPHETQFNHIRL 817
D S ++ S I E+ + ++L+ S + ET F+H+ L
Sbjct: 237 LLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPELETGFHHLGL 282
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 188 bits (478), Expect = 3e-47
Identities = 160/601 (26%), Positives = 269/601 (44%), Gaps = 75/601 (12%)
Query: 219 ILADEMGLGKTIQSIALLAFIYEMDTKGPFLI-----AAPLSTVENWMNEFARFAPDIPV 273
I+ADEMGLGKT+Q IAL+ + +G LI P S V NW NE ++ +
Sbjct: 332 IMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWLGPNTL 391
Query: 274 LKYY-----------NSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWK 322
N+ A HA + N + V+I SYE + R+++ + +
Sbjct: 392 TPLAVDGKKSSMGGGNTTVSQAIHAW-AQAQGRNIVKPVLIISYETLRRNVDQLKNCNVG 450
Query: 323 FLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFE 382
++ DEGHRLKN + L I+ R++L+GTP+QN+L E ++LL+F P +
Sbjct: 451 LMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPGLLGSRA 510
Query: 383 IFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPK 442
F K F+ L + +I E + + L TI+ F++RR ++LA LP K
Sbjct: 511 EFRKNFENPILRGRDADATDKEITKGEAQ---LQKLSTIVSKFIIRRTN-DILAKYLPCK 566
Query: 443 REYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWK 502
E++I + PLQ + Y + +K + + K G ++ +R
Sbjct: 567 YEHVIFVNLKPLQNELYNKLIKSREVKKVVK--------------GVGGSQPLRA----- 607
Query: 503 LSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQ---NMMIQLRQIVNSTYLFYFPLLEP 559
IG ++KL + H LLN + ++L N P
Sbjct: 608 ------------IGILKKLCN---HPNLLNFEDEFDDEDDLELPDDYNM----------P 642
Query: 560 TDLTLENLLKTSGKLQVLQKLVPEL-IKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRI 618
+ K S K +L++ + ++ + K+++ S + LDLIE ++ + R+
Sbjct: 643 GSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRL 702
Query: 619 DGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQA 678
DG+M N R++ ++ F+ + +FLLS++A G GINL A+ +I+ D DWNP D QA
Sbjct: 703 DGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQA 762
Query: 679 MDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQT 738
+ R R GQ K +YR TIE I R K L V+ + + N +
Sbjct: 763 LARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQ 822
Query: 739 FLKMNGSSLATT------TKQSANKELVKELSQLLISNETNQGQADTSKIENSDDILEES 792
+ N +++ T + +A + +K +L + T + +E ++D L ++
Sbjct: 823 LFQKNENTICETHETYHCKRCNAQGKQLKRAPAMLYGDATTWNHLNHDALEKTNDHLLKN 882
Query: 793 E 793
E
Sbjct: 883 E 883
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 187 bits (476), Expect = 4e-47
Identities = 112/336 (33%), Positives = 183/336 (54%), Gaps = 38/336 (11%)
Query: 85 DEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERA 144
D SA AS + + D +E+ L ++ QE VQ+++ +S + D +++
Sbjct: 754 DLPSATNTASVSEINFDSDEEEDIRR------LAVESAQEAVQKAREHSQLF-DANRQQS 806
Query: 145 GQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEG 204
N + + + + TL+ E K QP L C+LK YQ +G
Sbjct: 807 PNNSSSDMNEGEMNFQNP--TLVNAFEVK--------------QPKMLM-CKLKEYQLKG 849
Query: 205 LNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEM-DTKGPFLIAAPLSTVENWMNE 263
LNWL LYE G+NGILADEMGLGKT+QSI+++A++ E + GPFL+ AP ST+ NW E
Sbjct: 850 LNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHNWQQE 909
Query: 264 FARFAPDIPVLKYYNSEGQAARHAMMGKF-------FKNNKGEGVIITSYEIIIRDIELI 316
RF P + + Y+ G ++ KF + N V++TSY++++ D +
Sbjct: 910 ITRFVPKLKCIPYW---GSTKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYF 966
Query: 317 LSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPN 376
S +W+++I+DE +K+ + + L NRLLLTGTP+QN + ELW+LL+FI+P+
Sbjct: 967 QSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPS 1026
Query: 377 IFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEK 412
+F F++WF ++ES ++ T++ +L++
Sbjct: 1027 LFDSHNEFSEWF---SKDIESHAQSNTQLNEQQLKR 1059
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 187 bits (476), Expect = 4e-47
Identities = 129/371 (34%), Positives = 193/371 (51%), Gaps = 56/371 (15%)
Query: 135 IIADTLLERAGQNDEDETPQ-----KKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQP 189
++A E A Q D D+T KKK+K+E Q ++ K E P QP
Sbjct: 472 LLAQENAEAAMQRDLDKTRAFDVFAKKKEKEEEEQAQESVEDIKPEPRPEMK---DLPQP 528
Query: 190 SFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFL 249
K LK YQ +G+ WL +Y+ G++GILADEMGLGKT+QSIA L I E
Sbjct: 529 KMFKGT-LKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAE-------- 579
Query: 250 IAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKN------NKGEGVII 303
+ F PD V+ Y+ G A ++ +F+ + V+I
Sbjct: 580 -------------HYGVFVPDFKVVPYW---GSPAERKILRQFWDQKHLHTRDASFHVVI 623
Query: 304 TSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
TSY++++ D + +W+++++DE +K+ + + L + NRLLL+GTP+QN++
Sbjct: 624 TSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSM 683
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
ELW+LL+FI+P +F + FN+WF ++ES +E T I ++ IS LH ILK
Sbjct: 684 AELWALLHFIMPTLFDSHDEFNEWF---SKDIESHAENKTGI-----DEKQISRLHMILK 735
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLN 483
PF+LRR+KK+V L K E ++ CP+T QK Y+ ALK QK I+D L
Sbjct: 736 PFMLRRIKKDV-ENELSDKIEIMVYCPLTIRQKLLYR-ALK-------QKIRIEDLLHLT 786
Query: 484 AEYIGTVSNKS 494
+ T S+ S
Sbjct: 787 SGSTTTSSSSS 797
Score = 79.3 bits (194), Expect = 2e-14
Identities = 45/116 (38%), Positives = 71/116 (60%), Gaps = 1/116 (0%)
Query: 565 ENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQN 624
E L+ +GKL VL L+ L H+VLI+SQ M+DL+E++ R+DGS +
Sbjct: 1080 ETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKI 1139
Query: 625 NSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMD 680
++R++ + +F + + +FLLSTRA GLGINLTAAD++ + + P+ +L D
Sbjct: 1140 SARRDMVADFQTR-ADIFVFLLSTRAGGLGINLTAADTLKSSVTPYRPKPNLIRSD 1194
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 187 bits (475), Expect = 6e-47
Identities = 133/392 (33%), Positives = 197/392 (49%), Gaps = 69/392 (17%)
Query: 224 MGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQA 283
MGLGKTIQSI L I +GPFLI APLST+ NW EF + DI V+ Y+ S
Sbjct: 1 MGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISR 59
Query: 284 ARHAMMGKFFKNNKGEGV--------IITSYEIIIRDIELILSYQWKFLIVDEGHRLKNI 335
+F++++G + IIT++E+I+ + + +W+ +I+DE HRLKN
Sbjct: 60 QMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNK 119
Query: 336 NCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNL 395
NCKL+ LK +N +++LLTGTPLQN + EL+SLL+F+ P F F + +F DL
Sbjct: 120 NCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQ--EFGDLET 177
Query: 396 ESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQ 455
E +K L ILKP +LRRLK++V L PK E II +T +Q
Sbjct: 178 EEQVQK----------------LQAILKPMMLRRLKEDV-EKKLAPKEETIIEVELTNIQ 220
Query: 456 KKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNI 515
KKYY+ L+ N F A ++PN +
Sbjct: 221 KKYYRAILEKN-------------------------------FSFLSKGAGQTNVPN-LV 248
Query: 516 GKMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQ 575
M +L H L+ + ++ + R N +D L+ +++++GKL
Sbjct: 249 NTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPA---------ASDFHLQAMIQSAGKLV 299
Query: 576 VLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW 607
++ KL+P++ HKVLIFSQ V LD++ED+
Sbjct: 300 LIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 331
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 186 bits (471), Expect = 2e-46
Identities = 102/230 (44%), Positives = 152/230 (65%), Gaps = 7/230 (3%)
Query: 535 LQNMMIQLRQIVNSTYLFYFPLLEPTDLTLE-NLLKTSGKLQVLQKLVPELIKKKHKVLI 593
L N+++QLR+ N YLF P EP T + ++++ SGK+ VL KL+ L K +VLI
Sbjct: 316 LMNVVMQLRKCCNHPYLF--PDAEPKPYTNDKHIIENSGKMIVLDKLLASLKAKGSRVLI 373
Query: 594 FSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGL 653
FSQ MLD++ED++ + CRIDGS R E I+ F+ +GS+ LFLL+TRA GL
Sbjct: 374 FSQMSMMLDILEDYAMFREYEYCRIDGSTSYRDRTEAIDGFNAEGSEKFLFLLTTRAGGL 433
Query: 654 GINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNK 713
GINL+ AD+VI+FDSDWNPQ+DLQA DRAHRIGQ K V+V+RL +NT+E I+ R++ K
Sbjct: 434 GINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQKKQVVVFRLISENTVEERIVYRSLQK 493
Query: 714 RKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKEL 763
KL+ +++Q G+++ ++ +E + NG + T+ E ++++
Sbjct: 494 LKLDDILLQ-GRYHRSSSVSQSELIDILANGMEI---TEDEGKDESIEDV 539
Score = 185 bits (469), Expect = 3e-46
Identities = 105/273 (38%), Positives = 167/273 (60%), Gaps = 22/273 (8%)
Query: 196 QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFI-YEMDTKGPFLIAAPL 254
+L+ YQ EGLNWLI ++EN +N ILADEMGLGKT+Q+IA L +I Y + LI P
Sbjct: 52 ELRDYQIEGLNWLINMHENSINCILADEMGLGKTLQTIAFLGYIRYVKKERKRHLIILPK 111
Query: 255 STVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIE 314
ST+ NW EF +F P+ V +Y+S + R A + +++ + + T+YE+ I
Sbjct: 112 STLANWRREFRKFMPNYKVRVFYSSRKEMRREA---EEIMSSRWDACL-TTYEMCINARS 167
Query: 315 LILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFIL 374
++ + +W ++++DE HR+KN + L + ++ + +RLL+TGTPLQNN+ ELW+LLNFI+
Sbjct: 168 ILNTVKWSYIVIDEAHRIKNEHSLLSKIVRIFSCDHRLLITGTPLQNNVHELWALLNFIV 227
Query: 375 PNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNV 434
P IF+D E F + +N+ DE + I + ++L+ F LRR K +V
Sbjct: 228 PEIFNDAEKFESYV----MNI------------DEGDGEAIRRIRSVLQLFFLRREKIDV 271
Query: 435 LAGSLPPKREYIITCPVTPLQKKYYKQALKGNL 467
SLPPK+ + ++P+Q+++Y+ LK +L
Sbjct: 272 -EMSLPPKKIVNLYSKLSPMQREWYRMLLKRDL 303
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 183 bits (464), Expect = 1e-45
Identities = 153/541 (28%), Positives = 245/541 (45%), Gaps = 79/541 (14%)
Query: 197 LKPYQKEGLNWLITLY-----ENGLNGILADEMGLGKTIQSIALLAFIYEMD-------T 244
L +Q+EG+++L + G + ILADEMGLGKT+Q+I ++ + + T
Sbjct: 162 LYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTLQTITVVWTLLKQSYYANRSST 221
Query: 245 KGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIIT 304
++ AP++ ++NW NEF + + Y AR A + F +NK +IIT
Sbjct: 222 INNAMVVAPVTLLKNWENEFYNWLGHERIHVYI------ARCAEDFQEFTSNKTYSIIIT 275
Query: 305 SYEIIIRDIELI-LSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
YE + + LI DE HRLK+++ + L ++ T RLLLTGTPLQN+L
Sbjct: 276 GYETVCTYLRNYGCGIDIDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDL 335
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
E +S++NFI+P F ++ L S + I L + L
Sbjct: 336 SEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDI---SLGAARLQRLFEFTS 392
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLN 483
F LRR K N+LA LPP+ + ++ T Q+ Y L G K ++ + K ++
Sbjct: 393 NFTLRR-KANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDG-FKSSVDQ---KGYYLKI 447
Query: 484 AEYIGTVSNKSI--RDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQ 541
+ + N +I R+ E LS + L D H+ ++
Sbjct: 448 LTRLSKICNSTILLRNEKENFLSTE--------------LQDKHVFEQ------------ 481
Query: 542 LRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSML 601
EN+L +S KLQ+L L+ + K +I SQ+ L
Sbjct: 482 -----------------------ENMLLSSSKLQILAALLKSFQRGCQKAVIVSQYKETL 518
Query: 602 DLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKA-NLFLLSTRAAGLGINLTAA 660
+LIE + + + C++ GS + R + F+ K ++ LLS++A G G+NLT +
Sbjct: 519 ELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGS 578
Query: 661 DSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
+II++ WNP DLQA+ R +R GQ +PV +Y ++ I R K+ L
Sbjct: 579 TRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSF 638
Query: 721 I 721
I
Sbjct: 639 I 639
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 179 bits (454), Expect = 2e-44
Identities = 101/261 (38%), Positives = 149/261 (56%), Gaps = 12/261 (4%)
Query: 149 EDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQ-PSFLKNCQLKPYQKEGLNW 207
E++ K ++ + +R E K + P L + P + L+PYQ EGLNW
Sbjct: 1973 EEDVDNDKIEQYLRFNKIPQRSEWKSKKRPHPELWKKLEKTPVYKGGNSLRPYQLEGLNW 2032
Query: 208 LITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARF 267
L + N N ILADEMGLGKTIQS+ + +YE +GPFL+ APLST+ NW EF +
Sbjct: 2033 LKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEYGIRGPFLVIAPLSTIPNWQREFEGW 2092
Query: 268 APDIPVLKYYNSEGQAARHAMMGKFFKNNKGE--------GVIITSYEIIIRDIELILSY 319
D+ V+ Y+ S ++K G+ V+IT++E+I+ D + ++
Sbjct: 2093 T-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVTDYMDLKAF 2151
Query: 320 QWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFS 379
W+ ++DE HRLKN NCKL+ L+++N +R+LL+GTPLQNN+ EL+SLLNF+ P+ FS
Sbjct: 2152 NWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFS 2211
Query: 380 DFEIFNKWFDFSDLNLESSSE 400
E F +F L E S+
Sbjct: 2212 SQEEFMS--EFGSLRTEEESD 2230
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 178 bits (452), Expect = 3e-44
Identities = 164/555 (29%), Positives = 252/555 (44%), Gaps = 68/555 (12%)
Query: 213 ENGLNGILADEMGLGKTIQSIALLAFIYEMDTKG--PFLIAAPLSTVENWMNEFARFAP- 269
+ GL ILA MGLGKT Q IA L G LI P++ + NW +EF ++ P
Sbjct: 713 DKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPS 772
Query: 270 DIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEII--------IRDIELI----- 316
++ L+ + G +R K K GV + Y ++D+
Sbjct: 773 EVKPLRIFML-GDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICN 831
Query: 317 -LSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILP 375
L L+ DE H +KN + LK++ R+ LTG+PLQNNL E + +++F+
Sbjct: 832 ALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 891
Query: 376 NIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISN-LHTILKPFLLRRLKKNV 434
F F N + + + D N S+ L+ LK F+ +R+ NV
Sbjct: 892 GFLGSSPEFRNRFQ----NPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFV-QRMDMNV 946
Query: 435 LAGSLPPKREYIITCPVTPLQKKYYKQALK--GNLKQTIQKQAIKDFFTLNAEYIGTVSN 492
+ LPPK ++I+ ++PLQ+ Y++ L+ G ++ K+FF +++
Sbjct: 947 VKKDLPPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTDERMRKNFFAAYQVLAQILNH 1006
Query: 493 KSIRDFIEWKLSADSQ--------DIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQ 544
I S DS+ DIP+D D +I ++ Q M L+
Sbjct: 1007 PGIPQL----RSEDSKNGRRGSIVDIPDDCSS------DENIDYNMVTGEKQRTMNDLQD 1056
Query: 545 IVNSTYL---FYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSML 601
V+ YL ++ LL+ + + + SGK+ +L ++ K L+FSQ + L
Sbjct: 1057 KVDG-YLQKDWWVDLLQKNNYKVSDF---SGKMILLLDILSMSADVGDKALVFSQSIPTL 1112
Query: 602 DLIE--------------DWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSK-ANLFLL 646
DLIE W + ++ RIDG +++ R++ ++ F++ +K L+
Sbjct: 1113 DLIELYLSRVPRHGKQGKFWKKGKDWY--RIDGKTESSERQKLVDRFNEPDNKRVKCTLI 1170
Query: 647 STRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVI 706
STRA LGINL AA+ VII D WNP DLQA+ RA R GQ KPV YRL TIE I
Sbjct: 1171 STRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKI 1230
Query: 707 MTRAVNKRKLEKLVI 721
R V K L V+
Sbjct: 1231 YKRQVTKEGLAARVV 1245
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 174 bits (440), Expect = 7e-43
Identities = 195/748 (26%), Positives = 326/748 (43%), Gaps = 158/748 (21%)
Query: 85 DEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFV--------QQSQVYSSII 136
+ K+ K +SE+ N+ DE + +D+ + ++F+ +++ +
Sbjct: 33 NSKTLQLKGNSENV--NDSQDEEYRDDATLVKSPDDDDKDFIIDLTGSDKERTATDENTH 90
Query: 137 A-----DTLLERAGQND--EDETPQKKKQK----KEAIQTLMKRDEPKDEGSPSTSLSSS 185
A D ++E + D +D+ P KK+K K+ +T K+ PK +L
Sbjct: 91 AIKNDNDEIIEIKEERDVSDDDEPLTKKRKTTARKKKKKTSTKKKSPKVTPYERNTLRLY 150
Query: 186 FMQPSF------LKNC----------------QLKPYQKEGLNWLITLYEN-GLNGILAD 222
P LKN +L P+Q EGL+WLI+ E+ G+LAD
Sbjct: 151 EHHPELRNVFTDLKNAPPYVPQRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLAD 210
Query: 223 EMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQ 282
EMG+GKTIQ+IALL TK P L+ AP + W NE + LK Y G
Sbjct: 211 EMGMGKTIQTIALLMNDL---TKSPSLVVAPTVALMQWKNEIEQHTKG--QLKIYIYHG- 264
Query: 283 AARHAMMGKFFKNNKGEGVIITSYEII-----------------IRDIELILSYQWKFLI 325
A K+ +G V++T+Y ++ + ++ + + +I
Sbjct: 265 ----ASRTTDIKDLQGYDVVLTTYAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVI 320
Query: 326 VDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDF---- 381
+DE H +K+ R + + T R L+GTPLQN +GE++SL+ F+ N F+ +
Sbjct: 321 LDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTK 380
Query: 382 -EIFNKWFDFSD-LNLESSSEKL---TKIINDELEKNL------------ISNLHTILKP 424
+ +K + F+D ++ + S + T N + KN+ +N+ T+LK
Sbjct: 381 CDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLKN 440
Query: 425 FLLRRLK-KNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLN 483
+LRR K + LPP+ + +++ ++ + K +L +++ + + + +
Sbjct: 441 IMLRRTKVERADDLGLPPR--------IVTVRRDFFNEEEK-DLYRSLYTDSKRKYNSFV 491
Query: 484 AEYIGTVSNKSIRDF---IEWKLSADSQDI--------PNDNIG---------KMEKLYD 523
E G V N F + AD D+ P D+IG + E+ +
Sbjct: 492 EE--GVVLNNYANIFTLITRMRQLADHPDLVLKRLNNFPGDDIGVVICQLCNDEAEEPIE 549
Query: 524 MHIH--------KELLNKRLQN------------MMIQLRQIVNSTYLFYFPLLEPTDLT 563
H KE + ++N + I L Q L F +
Sbjct: 550 SKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQPALEVDLDSF-----KKQS 604
Query: 564 LENLLKTSGKLQ---VLQKLVPELIKKKH-----KVLIFSQFVSMLDLIEDWSELNNFIS 615
+ + L SGK Q ++ LV EL K + K ++FSQF SMLDL+E + F +
Sbjct: 605 IVSRLNMSGKWQSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQT 664
Query: 616 CRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVD 675
++ GSM R E I+ F + +FL+S +A G+ +NL A V I D WNP V+
Sbjct: 665 VKLQGSMSPTQRDETIKYF-MNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVE 723
Query: 676 LQAMDRAHRIGQTKPVIVYRLYCDNTIE 703
Q+ DR HRIGQ +PV + R +++IE
Sbjct: 724 WQSGDRVHRIGQYRPVKITRFCIEDSIE 751
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 173 bits (438), Expect = 1e-42
Identities = 178/650 (27%), Positives = 285/650 (43%), Gaps = 117/650 (18%)
Query: 170 DEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWL----ITLYENGLNGILADEMG 225
D KD+ S SSF+ ++ L +Q +GL WL + GILAD+MG
Sbjct: 212 DNVKDD---SMQRQSSFIPGMHIR---LLDHQVQGLTWLKSRETVSKSSASGGILADDMG 265
Query: 226 LGKTIQSIALLAFIYEMDTKGPF---LIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQ 282
LGKTIQ IAL+ K L+ APLS ++ W +E + + + Y+
Sbjct: 266 LGKTIQMIALILSHPLPKKKHSIKSTLVVAPLSLIKQWESE-VQTKSKLTAIVYHG---- 320
Query: 283 AARHAMMGKFFKNNKGEGVIITSYEIIIRDI-----------------------ELILSY 319
A+R+ ++ + + V+IT+Y+I++ + + ++
Sbjct: 321 ASRYKLLKVIHEYD----VVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAF 376
Query: 320 QWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFS 379
W +I+DE H +KN + K + NR LTGTPLQNN+ EL+SL+ F+ N F+
Sbjct: 377 YWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFN 436
Query: 380 DFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLK-------- 431
D + W D L L E L + L +L +LRR K
Sbjct: 437 DQSV---WKDQISLPLCQGEENL-----------VFKRLRMLLSVIMLRRTKTLLEANAG 482
Query: 432 KNVLAGSLPPKRE--YIITCPVTPLQKKYYKQALKGNLKQTIQ----------------- 472
K+ G+L + Y + C ++ +Y L N+++T+
Sbjct: 483 KDGTGGALKLSKRLVYKVICKFEESERDFYSN-LARNMERTMSNFVNSGKLGKNYTNILC 541
Query: 473 -----KQAIKDFFTLNAEYIGTVSNKSIRDFIEW--KLSADSQ--DIPN----DNIGKME 519
+QA +LN ++ V + D KL++D D+ N IG +
Sbjct: 542 LLLRLRQACNHPQSLNFQFEQDVDAFNALDGAANTNKLASDQDVDDLANLLETVEIGSRK 601
Query: 520 KLYDMHIHKELL----NKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQ 575
K + EL K+ ++ +++ + +P D TL K L+
Sbjct: 602 KSFCTICMAELPPDFHEKKCKDCSRNFKELDKG-------IQDPNDKTLYKSSKIREILK 654
Query: 576 VL---QKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIE 632
+L ++ + ++ K +IFSQF + LD+I+ R DG M N +R++ ++
Sbjct: 655 ILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLD 714
Query: 633 EFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVI 692
+ S + L S + LG+NLT A VI+ D WNP ++ QA+DR HRIGQ + V+
Sbjct: 715 -LLRSDSGTQVLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVL 773
Query: 693 VYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFN--TLKKLAFNEQTFL 740
VY+L +NTIE I+ KR L K + GK + T KKL N+ FL
Sbjct: 774 VYKLVVENTIEEKIVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFL 823
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 169 bits (428), Expect = 2e-41
Identities = 176/706 (24%), Positives = 290/706 (40%), Gaps = 161/706 (22%)
Query: 142 ERAGQNDEDETP------QKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNC 195
E ++DE+E Q+ + L+ + P +E + F+ P +
Sbjct: 111 ESVSEDDEEEEKGGTHVNDVLNQRDALGRVLVNLNHPPEE-------ENVFLAPQLAR-- 161
Query: 196 QLKPYQKEGLNWLITLYEN------------GLNGILADEMGLGKTIQSIALLAFIYEMD 243
+KP+Q G+ +L Y+N G ILA MGLGKT+Q I+ + ++
Sbjct: 162 AVKPHQIGGIRFL---YDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 218
Query: 244 TKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQ------------------AAR 285
L P++T++NW+ EF + P L N + A+R
Sbjct: 219 PAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASR 278
Query: 286 HAMMGKFFKNNKGEGVIITSYE-------------------------III---------- 310
+M + GV++ YE +II
Sbjct: 279 AKVMADWVSEG---GVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQE 335
Query: 311 --RDIELILSYQWKFLIV-DEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELW 367
R+ E L +++ DEGHR+KN + LK I + R++LTG PLQNNL E W
Sbjct: 336 FRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYW 395
Query: 368 SLLNFILPNIFSDFEIFNKWFDFSDLN---LESSSEKLTKIINDELEKNLISNLHTILKP 424
+++F+ P+ + F+ F+ LN ++S+ + + L + LH++L+
Sbjct: 396 CMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDV------RLMRYRSHVLHSLLEG 449
Query: 425 FLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALK-------------------- 464
F+ RR VL LP K E +I ++ +Q+ Y Q +
Sbjct: 450 FVQRR-GHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFC 508
Query: 465 ---------GNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNI 515
L + +QK+++ + L+ E +G+ + + P
Sbjct: 509 VCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSA-------------RCPPQGTK 555
Query: 516 GKMEKLYDMHIHKELLNKR-LQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKL 574
GK E E N + LQ + Q + + Y + +L+ S K+
Sbjct: 556 GKGEDSTLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKM 615
Query: 575 QVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW------------------SELNNFISC 616
+L L+ E +K K+L+FSQ +S L LIE++ + N
Sbjct: 616 VLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYF 675
Query: 617 RIDGSMQNNSRKEQIEEFSKKGSKAN-LFLLSTRAAGLGINLTAADSVIIFDSDWNPQVD 675
R+DGS R+ I +F+ + LFLLSTRA LG+NL A+ V++FD+ WNP D
Sbjct: 676 RLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHD 735
Query: 676 LQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVI 721
QA+ R +R GQ KP +YRL D T+E I R ++K+ + V+
Sbjct: 736 AQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVV 781
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 166 bits (420), Expect = 1e-40
Identities = 174/636 (27%), Positives = 276/636 (43%), Gaps = 118/636 (18%)
Query: 197 LKPYQKEGLNWLITLYENGLNG-ILADEMGLGKTIQSIALLAFIYEMDTKG-PFLIAAPL 254
L P+Q+EG+ WL ++ G ILADEMG+GKTIQ+IALL + +G P L+ AP+
Sbjct: 357 LLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLL----SEPRGKPTLVVAPV 412
Query: 255 STVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE-----GVIITSYEII 309
+ W E L Y GQA ++ GE V++TSY +I
Sbjct: 413 VAIMQWKEEIDTHTNK--ALSTYLYYGQA----------RDISGEELSSYDVVLTSYNVI 460
Query: 310 -----------------IRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRL 352
+++ L+ ++ +I+DE H +K+ C R + + T+ ++
Sbjct: 461 ESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKI 520
Query: 353 LLTGTPLQNNLGELWSLLNFILPNIFSDF-----EIFNKWFDFSDL-NLESSSEKL---T 403
L+GTPLQN +GEL+SLL F+ + F+ + E + + FSD N + K T
Sbjct: 521 CLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHT 580
Query: 404 KIINDELEKNL------------ISNLHTILKPFLLRRLKKNVLAG-SLPPKREYIITCP 450
N E+ K + +H++LK +LRR K LPP+
Sbjct: 581 CYFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLERADDLGLPPR-------- 632
Query: 451 VTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDI 510
V ++K + + + ++ Q++ + + F T AE G V N F D
Sbjct: 633 VVEVRKDLFNEE-EEDVYQSLYMDSKRKFNTYLAE--GVVLNNYANIFQLITRMRQMADH 689
Query: 511 PNDNIGKMEKLYDMH------------IHKELLNKRLQNMMIQL-----------RQIVN 547
P+ + K D+ + ++ + R + +L + VN
Sbjct: 690 PDLVLASKRKTVDIENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVN 749
Query: 548 STYLFYFPLLEPTDLTLE------------------NLLKTSGKLQVLQKLVPELIKKKH 589
F ++ + LE N ++S K++ L + + L KK
Sbjct: 750 CPSCFIPLSIDLSAPALEDFSEEKFKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDR 809
Query: 590 --KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLS 647
K ++FSQF SMLDLI F ++DG M +R IE FS +FL+S
Sbjct: 810 TLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSND-INITIFLVS 868
Query: 648 TRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIM 707
+A G+ +NLT A V + D WN V QAMDR HRIGQ +P+ V L +N+IE+ I+
Sbjct: 869 LKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKII 928
Query: 708 TRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMN 743
K ++ I + L +L+ + FL N
Sbjct: 929 ELQEKKAQMIHATIDQDE-KALNQLSVEDMQFLFSN 963
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 163 bits (412), Expect = 1e-39
Identities = 129/473 (27%), Positives = 208/473 (43%), Gaps = 86/473 (18%)
Query: 249 LIAAPLSTVENWMNEFARF-----APDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVII 303
LI P S V NW EF ++ P + L + + +M ++
Sbjct: 188 LIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQSTIKLMP----------YLV 237
Query: 304 TSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
SY++ R +E + ++ ++ DEGH+LKN++ KL + L + RL+LTGTP+QN+
Sbjct: 238 ISYDLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDF 297
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
E +SLL+F+ P++F F K E+L ++I++
Sbjct: 298 EEFYSLLDFVRPSVFGSIVEFRKM-------CSDRPEQLNELIDE--------------- 335
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLN 483
+LRR +V LP K EYI+ C +P IQK ++
Sbjct: 336 -CMLRRTAADVDLKHLPEKHEYILFCAASP-----------------IQKH-------VH 370
Query: 484 AEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLR 543
+E ++ ++ + A+ + DN+ + + H H LL
Sbjct: 371 SEICDYMTGDALSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLL------------ 418
Query: 544 QIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDL 603
L + P +K SGKL L ++ + +I S ++ LD+
Sbjct: 419 -------LAFDGAHMP-----RGGVKESGKLTALVDMIKCFRLLQECTVIVSNYIETLDM 466
Query: 604 IEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSV 663
I+ E NF R+DG Q R++ + F+ +N+FLLST+A G+G+NL A +
Sbjct: 467 IQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRL 526
Query: 664 IIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
++FDSDWNP D QAM R R GQ +P +YRL TIE ++ R + K L
Sbjct: 527 VLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL 579
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 160 bits (404), Expect = 1e-38
Identities = 84/190 (44%), Positives = 122/190 (64%), Gaps = 2/190 (1%)
Query: 534 RLQNMMIQLRQIVNSTYLF--YFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKV 591
++ N++++LRQ+ + YL + P E + LL+ SGKLQ+L K++ +L ++ H+V
Sbjct: 374 KISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRV 433
Query: 592 LIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAA 651
LI++QF L L+ED+ N+ RIDG + R+ +I+ F+ + S FLLSTRA
Sbjct: 434 LIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAG 493
Query: 652 GLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAV 711
G+GINL AD+VII+DSDWNP DLQAM R HR+GQT V++YRL T+E +M
Sbjct: 494 GIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITK 553
Query: 712 NKRKLEKLVI 721
NK LE LV+
Sbjct: 554 NKMLLEHLVV 563
Score = 86.7 bits (213), Expect = 1e-16
Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 154 QKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYE 213
Q + Q+ + I + +RD+ + + P FL L YQ EGLN+L +
Sbjct: 183 QNEIQRFKDINSSSRRDKYVENERNREEFKQFDLTPEFLTGT-LHTYQLEGLNFLRYSWS 241
Query: 214 NGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPV 273
N ILADEMGLGKTIQSIA LA ++E + P L+ APLST+ NW EFA +AP + V
Sbjct: 242 KKTNVILADEMGLGKTIQSIAFLASLFE-ENLSPHLVVAPLSTIRNWEREFATWAPHMNV 300
Query: 274 LKY 276
+ Y
Sbjct: 301 VMY 303
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 153 bits (386), Expect = 1e-36
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Query: 567 LLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
+++ +GKL ++ KL+P+LI HKVLIFSQ V LD++ED+ + RIDG ++ N
Sbjct: 1 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 60
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R+ I+ F K S +FLL TRA GLGINLTAAD+ IIFDSDWNPQ DLQA R HRIG
Sbjct: 61 RQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 120
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQ----MGKFNTLKKLAFNEQTFLKM 742
Q+K V VYRL N+ E + +A K L+K V+Q G N +++L+ E L
Sbjct: 121 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLR 180
Query: 743 NGSSLATTTKQSANKELVKELSQLLISNETN 773
G+ A ++ + +E ++ T+
Sbjct: 181 KGAYGALMDEEDEGSKFCEEDIDQILQRRTH 211
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 146 bits (369), Expect = 1e-34
Identities = 169/684 (24%), Positives = 268/684 (38%), Gaps = 189/684 (27%)
Query: 195 CQLKPYQKEGLNWL------------------------------ITLYENGLNG------ 218
C+L+PYQK+ L+W+ + +Y N G
Sbjct: 346 CELRPYQKQALHWMTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHF 405
Query: 219 ----------ILADEMGLGKTIQSIALL----------AFI---YEMDT----------- 244
ILAD MGLGKT+ +I+LL F+ YE D
Sbjct: 406 PSTLQMARGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTS 465
Query: 245 -----------------------KGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEG 281
G LI P++ + W E A L Y G
Sbjct: 466 PPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKP-GSLSVYVHYG 524
Query: 282 QAARHAMMGKFFKNNKGEGVIITSYEIIIR--------DIELILSYQWKFLIVDEGHRLK 333
Q+ K K V+IT+Y ++ D E I + +W +++DE H +K
Sbjct: 525 QSRP-----KDAKLLSQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIK 579
Query: 334 NINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDL 393
N ++ + R LTGTP+QNNL +L+SLL F+ + + +NK
Sbjct: 580 NSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNK---LVQK 636
Query: 394 NLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGS-----LPPKREYIIT 448
E E+ K++ +ILKP +LRR K + LPP +I
Sbjct: 637 PFEEGDERGLKLVQ------------SILKPIMLRRTKSSTDREGRPILVLPPADARVIY 684
Query: 449 CPVTPLQKKYYKQALKGNLKQ----TIQKQAIKDFFTL---------------------- 482
C ++ ++ +Y K + + Q + + ++ ++
Sbjct: 685 CELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGD 744
Query: 483 NAEYIGTVSNKSIRDFIEWK---LSADSQDIPNDNIGK-----------------MEKLY 522
AEY NK + F+ K L + +D+P++ + +E L
Sbjct: 745 TAEYSDL--NKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALE 802
Query: 523 DM-------HIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTD----LTLENLLKTS 571
D + +E L +N L + +T + PT+ + +E S
Sbjct: 803 DAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSKQELITAPTESRFQVDVEKNWVES 862
Query: 572 GKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQI 631
K+ L + + L K ++FSQ+ + LDL++ NNF R+DG++ R++ +
Sbjct: 863 SKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVL 922
Query: 632 EEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPV 691
+EFS+ GS L L+S +A G+GINLTAA + + D WNP V+ QA+ R HRIGQTK V
Sbjct: 923 KEFSEDGSILVL-LMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEV 981
Query: 692 IVYRLYCDNTIENVIMTRAVNKRK 715
+ R T+E AV RK
Sbjct: 982 KIRRFIVKGTVEE--RMEAVQARK 1003
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 139 bits (351), Expect = 1e-32
Identities = 144/613 (23%), Positives = 254/613 (40%), Gaps = 114/613 (18%)
Query: 200 YQKEGLNWLITLY-ENGLNGILADEMGLGKTIQSIAL------------------LAFIY 240
+QK+ L WL+ + GILAD+MGLGKT+ IAL L ++
Sbjct: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
Query: 241 EMD----TKGPFLIAAPLSTVENWMNEFARFAPDIPVLKY-YNSEGQAARHAMMGKFFKN 295
+ D T LI P S + +W NE + + Y Y+ + +R ++ +
Sbjct: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTY--- 689
Query: 296 NKGEGVIITSYEIIIRDIEL--------------------ILSYQWKFLIVDEGHRLKNI 335
++IT+Y ++ ++I +L W +I+DE H +KN
Sbjct: 690 ----DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNP 745
Query: 336 NCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNL 395
+ + ++ R +TGTP+QNNL +++SLL F+ S F+ FN W D
Sbjct: 746 RVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLR---CSPFDEFNLWRSQVDNGS 802
Query: 396 ESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQ 455
+ E+L+ + K LLRR K + + P ++ P Q
Sbjct: 803 KKGGERLS----------------ILTKSLLLRRTKDQLDSTGRP-----LVILPQRKFQ 841
Query: 456 KKYYK----QALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRD-FIEWKLSADSQDI 510
+ K + N+ + A++ + + E G S +S + F L S++
Sbjct: 842 LHHLKLSEDEETVYNVFFARSRSALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEP 900
Query: 511 PNDNIGKMEKLYDMHIHKELLNKRL-------------------QNMMIQLRQIVNSTYL 551
+ + +HI +LL R + +++ L + +++ L
Sbjct: 901 RHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTL 960
Query: 552 FYFPLLEPTDLTLEN-------LLKTSGKLQVLQKLVPELI-----KKKHKVLIFSQFVS 599
EP+ N L + + + L+ EL K +I SQ+ +
Sbjct: 961 SELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTN 1020
Query: 600 MLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTA 659
ML ++ + + IDGS+ R + +E F+ + L+S A G+G+NLT
Sbjct: 1021 MLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGP-QVMLISLLAGGVGLNLTG 1079
Query: 660 ADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKL 719
+ + + D WNP ++ QA DR +R+GQ K V+++R C+ T+E I+ K+ L K
Sbjct: 1080 GNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQ 1139
Query: 720 VIQMGKFNTLKKL 732
V+ G ++ KL
Sbjct: 1140 VLS-GSGESVTKL 1151
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 135 bits (341), Expect = 2e-31
Identities = 91/290 (31%), Positives = 142/290 (48%), Gaps = 20/290 (6%)
Query: 175 EGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIA 234
+GS + S F PS L L+ YQK GL+WL LY LNGILADE GLGKT+Q IA
Sbjct: 1034 KGSARVTTSVKFNAPSLLYGA-LRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIA 1092
Query: 235 LLAFI-YEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFF 293
A + GP L+ + W E R+ P + +L Y S + A ++
Sbjct: 1093 FFAHLACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHREL--KAKRQEWA 1150
Query: 294 KNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLL 353
+ N V ITSY R + +WK L++DE R+K + + + + + RLL
Sbjct: 1151 EPNSFH-VCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLL 1209
Query: 354 LTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKN 413
L +PL N ELW++++F++P I + L + SE+ + +
Sbjct: 1210 LIDSPLHNTFLELWTMVHFLVPGISR---------PYLSSPLRAPSEE-----SQDYYHK 1255
Query: 414 LISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQAL 463
++ LH + +PF+LRR K++V L K E+++ C ++ QK Y+ +
Sbjct: 1256 VVIRLHRVTQPFILRRTKRDV-EKQLTKKYEHVLKCRLSNRQKALYEDVI 1304
Score = 89.0 bits (219), Expect = 3e-17
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 511 PNDNIGKMEKLYD--MHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLL 568
P+ + + LY M I ++ L + QLRQ + L FP L
Sbjct: 1807 PSLRVPRPPPLYSHRMRILRQGLREHAAPYFQQLRQ-TTAPRLLQFPELRLVQFD----- 1860
Query: 569 KTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRK 628
SGKL+ L L+ +L + +VLI SQ + MLD++E + + RID + + R+
Sbjct: 1861 --SGKLEALAILLQKLKSEGRRVLILSQMILMLDILEMFLNFHYLTYVRIDENASSEQRQ 1918
Query: 629 EQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQT 688
E + F++ + +LST + GINL AD+V+ +D+D NP +D +A + RIG+
Sbjct: 1919 ELMRSFNRD-RRIFCAILSTHSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRC 1977
Query: 689 KPVIVYRLYCDNTIENVIM 707
K + +YRL N+IE ++
Sbjct: 1978 KDIHIYRLVSGNSIEEKLL 1996
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 134 bits (336), Expect = 7e-31
Identities = 103/407 (25%), Positives = 183/407 (44%), Gaps = 46/407 (11%)
Query: 170 DEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKT 229
D+ D S L P + +L YQ+ G+ WL L+ GI+ DEMGLGKT
Sbjct: 359 DDADDNERSSVQLEGGLNIPECIFR-KLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKT 417
Query: 230 IQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMM 289
IQ ++ L ++ P +I P++ + W E ++ PD V ++S +
Sbjct: 418 IQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQ 477
Query: 290 GKFFKN------------------------------NKGEGVIITSYEIIIRDIELILSY 319
GK ++ N G++IT+YE + E +L+
Sbjct: 478 GKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNI 537
Query: 320 QWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFS 379
+W + ++DEGHR++N N + K++ T +R+++TG P+QN L ELWSL +F+ P
Sbjct: 538 EWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLG 597
Query: 380 DFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSL 439
+F F + + + ++ ++ L ++ P+LLRR+K +V A L
Sbjct: 598 VLPVFEAEFSV-PITVGGYANASPLQVSTAYRCAVV--LRDLIMPYLLRRMKADVNA-HL 653
Query: 440 PPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFI 499
K E+++ C +T Q+ Y+ L + + I + + + + + N D +
Sbjct: 654 TKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGI--DVMRKICNHP--DLL 709
Query: 500 EWKLSADSQDIPN-DNIGKME------KLYDMHIHKELLNKRLQNMM 539
E + S + D N + GKM+ K++ H+ LL + Q M+
Sbjct: 710 EREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQML 756
Score = 119 bits (299), Expect = 1e-26
Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 571 SGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQ 630
SGK++V+ +++ ++ H+VL+FSQ MLD++E + N + R+DG R
Sbjct: 726 SGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMAL 785
Query: 631 IEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKP 690
I+EF+ +F+L+T+ GLG NLT A+ VIIFD DWNP D+QA +RA RIGQ K
Sbjct: 786 IDEFNNSEDMF-VFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKD 844
Query: 691 VIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTF-LKMNGSSLAT 749
V VYRL TIE + R + K L +++ + K + F LK +G S A+
Sbjct: 845 VTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFILKDDGDSNAS 904
Query: 750 TTKQSANKELVKELSQL-------------LISNETNQGQADTSKIENSD 786
T + +L +E++ + L ++T +G ++ + +E +D
Sbjct: 905 TETSNIFSQLAEEINIVGVQSDKKPESDTQLALHKTAEGSSEQTDVEMTD 954
>At2g21450 [L] KOG0390 DNA repair protein SNF2 family
Length = 816
Score = 124 bits (310), Expect = 8e-28
Identities = 146/614 (23%), Positives = 261/614 (41%), Gaps = 113/614 (18%)
Query: 158 QKKEAIQTLMKRDEPKDEGSPSTSLSSS---------FMQPSFLKNCQLKPYQKEGLNWL 208
++K + +T M+ E + + + SS F+ P + +++P+Q EG +L
Sbjct: 219 KQKRSRRTYMREKENGETSRDFSGIQSSHTNILGEKMFIHP--WHDQEMRPHQTEGFRFL 276
Query: 209 ITLYENGLNG--ILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFAR 266
G ILA G GKT I+ L MD + L+ P +E+W EF
Sbjct: 277 CNNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARPLVVLPKGIIESWKREFTL 336
Query: 267 FAPD-IPVLKYYNSEGQAARHAM--MGKFFKNNKGEGVIITSYEIIIR------------ 311
+ + IP+L +Y+ + ++ + + +G++ K ++ Y+ R
Sbjct: 337 WEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERS---ILFLGYQQFTRIICDDNFEAASE 393
Query: 312 DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLN 371
D +LIL + LI+DEGH +N ++ L R+ T +++LTGT QNN+ E++++L+
Sbjct: 394 DCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNNVEEVFNILD 453
Query: 372 FILPNIF---SDFEIFNKWFDFSDL------NLESSSEKLTKIINDELEKNLISNLH--- 419
+ P EI ++ +++ N SSS + T EL +N
Sbjct: 454 LVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSSSSIEGTFFAAVELTLQRSTNFSAKA 513
Query: 420 TILKPFLLRRLKKNVL-------AGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQ 472
+++K LR + +N+L +G LP E+ + ++ +Q+ K K L + I
Sbjct: 514 SLIKD--LREMTRNILHYHKADFSGLLPGLSEFTVMLNLSSIQRDEVKGLRKMELFKQIS 571
Query: 473 KQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLN 532
A A YI + ++ F+E S + ++N M+ L+
Sbjct: 572 LGA--------ALYI----HPKLKSFLEENPSNGEKGFSDNNTTVMK-----------LD 608
Query: 533 KRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVL 592
K L+ I +R V + L L L +++G+ K+L
Sbjct: 609 KMLKK--INVRDGVKMKFF----------LNLLALCESTGE----------------KLL 640
Query: 593 IFSQFV-------SMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFL 645
+FSQ++ ++ ++ W + I G N R+ +E F+ +A +F
Sbjct: 641 VFSQYIVPIKTLERLMSSMKGWRLGKEMFT--ITGDSSNEQREWSMERFN-NSLEAKVFF 697
Query: 646 LSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENV 705
S +A G GI+L A V+I D NP V QA+ RA+R GQ + V Y+L ++ E
Sbjct: 698 GSIKACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEE 757
Query: 706 IMTRAVNKRKLEKL 719
K + K+
Sbjct: 758 NYETCTRKEMMSKM 771
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 123 bits (308), Expect = 1e-27
Identities = 135/556 (24%), Positives = 222/556 (39%), Gaps = 117/556 (21%)
Query: 219 ILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIP------ 272
I++ G GKT +I L + +I AP S + W EF ++ IP
Sbjct: 38 IMSHAPGTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLLTWAEEFKKWNISIPFHNLSS 97
Query: 273 -------------VLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEII---------- 309
+L N+ ++ M K + K + ++ SY +
Sbjct: 98 LDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDED 157
Query: 310 --------------IRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLT 355
+ DI IL + L++DE H +N + + L ++ T R+LL+
Sbjct: 158 KKTKMVREVKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLS 217
Query: 356 GTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKI----INDELE 411
GTP QNN EL ++L P K+ + L+ S +TK + +E+
Sbjct: 218 GTPFQNNFLELCNVLGLARP----------KYLERLTSTLKKSGMTVTKRGKKNLGNEIN 267
Query: 412 KNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTI 471
I L ++ PF+ K ++L SLP RE ++ LQ++ + + ++T
Sbjct: 268 NRGIEELKAVMLPFVHVH-KGSILQSSLPGLRECVVVLNPPELQRRVLESIEVTHNRKTK 326
Query: 472 QKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELL 531
+ +L + + VS I + + +LS D E L
Sbjct: 327 NVFETEHKLSLVSVHPSLVSRCKISE--KERLSID----------------------EAL 362
Query: 532 NKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKV 591
+L+ + + Q V + +L F L E+IK+K V
Sbjct: 363 LAQLKKVRLDPNQSVKTRFLMEFVEL------------------------CEVIKEK--V 396
Query: 592 LIFSQFVSMLDLIED-------WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLF 644
L+FSQ++ L LI W+ + + G ++ R+ I EF+ SKA +F
Sbjct: 397 LVFSQYIDPLKLIMKHLVSRFKWNPGEEVLY--MHGKLEQKQRQTLINEFNDPKSKAKVF 454
Query: 645 LLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIEN 704
L ST+A GI+L A VI+ D WNP V+ QA+ RA+RIGQ + V Y L T E
Sbjct: 455 LASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEG 514
Query: 705 VIMTRAVNKRKLEKLV 720
+ K ++ +LV
Sbjct: 515 PKYCKQAQKDRISELV 530
>7293730 [R] KOG0383 Predicted helicase
Length = 884
Score = 122 bits (306), Expect = 2e-27
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 27/216 (12%)
Query: 150 DETPQKKKQKKEAIQTLMKRDEPKDEG---------SPSTSLSSSFM-QPSFLKNC--QL 197
+ T + K+ K+ ++ +K ++ +D P+T L + QP+FL+ QL
Sbjct: 662 ETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQL 721
Query: 198 KPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLST 256
PYQ EG+NWL + G++ ILADEMGLGKTIQ++ L +Y E +GPFL+A PLST
Sbjct: 722 HPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLST 781
Query: 257 VENWMNEFARFAPDIPVLKYYNS--------------EGQAARHAMMGKFFKNNKGEGVI 302
+ NW EF +APD + Y E A R + + + V+
Sbjct: 782 LVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVL 841
Query: 303 ITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCK 338
+TSYE+I D + S W L+VDE HRLK+ K
Sbjct: 842 LTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSK 877
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 120 bits (300), Expect = 1e-26
Identities = 134/517 (25%), Positives = 215/517 (40%), Gaps = 72/517 (13%)
Query: 249 LIAAPLSTVENWMNEFARFAPDIP-VLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYE 307
LI P S + W+ + +P +LK Y G R + + K + +++T+Y
Sbjct: 361 LIVCPPSVISAWITQLEEHT--VPGILKVYMYHG-GERTDDVNELMKYD----IVLTTYG 413
Query: 308 IIIRDIEL----ILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
+ + + +W +I+DE H +KN N + R + ++ S R +TGTP+QN
Sbjct: 414 TLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGS 473
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILK 423
+L+SL+ F+ F F I + W L ++K +S L ++
Sbjct: 474 FDLYSLMAFLR---FEPFSIKSYWQSLIQRPLGQGNKKG------------LSRLQVLMA 518
Query: 424 PFLLRRLKKNVLAGSLPPKRE--YIITCPVTPLQKKYYKQALKGNLKQTIQ--------- 472
LRR K+ L G P E Y+ P + + KG ++ I
Sbjct: 519 TISLRRTKEKSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYS 578
Query: 473 ---------KQAIKDFFTLNAEYIGTVSNKSIRDFIE-----WKLSADSQD--------- 509
+Q D E ++ S+ D + KL A QD
Sbjct: 579 TVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDKPELLQKLVAALQDGEDFDCPIC 638
Query: 510 -IPNDNIGKMEKLYDMHIHKELLN--KRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLEN 566
P NI + + + +L +R + + R + + L+ P P +
Sbjct: 639 ISPPTNI-IITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPDSSNTDG 697
Query: 567 L-LKTSGKLQVLQKLVPELIKKKH-----KVLIFSQFVSMLDLIEDWSELNNFISCRIDG 620
K+S K + L+ L+ + K ++FSQF ML L+E + F R+DG
Sbjct: 698 EDAKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDG 757
Query: 621 SMQNNSRKEQIEEFSKKGSKANLFLL-STRAAGLGINLTAADSVIIFDSDWNPQVDLQAM 679
+M R + I EF + LL S +A+G GINLTAA V +FD WNP V+ QAM
Sbjct: 758 AMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAM 817
Query: 680 DRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
DR HRIGQ + V + R+ N+IE ++ K+ L
Sbjct: 818 DRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNL 854
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 117 bits (292), Expect = 9e-26
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 26/204 (12%)
Query: 560 TDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSEL--------- 610
TD E +L+ SGK+ +L +++ + KVL+FSQ + LDLIED+ EL
Sbjct: 2007 TDADAE-VLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDK 2065
Query: 611 -------------NNFISCRIDGSMQNNSRKEQIEEFSKKGS-KANLFLLSTRAAGLGIN 656
N R+DGS SRK+ EEF+ + + + LF++ST+A LGIN
Sbjct: 2066 DKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGIN 2125
Query: 657 LTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
L AA+ VIIFD+ WNP D+Q++ R +R GQTKPV VYR T+E+ I R V K+ L
Sbjct: 2126 LVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSL 2185
Query: 717 EKLVIQMGKFNTLKKLAFNEQTFL 740
V+ + + NE T L
Sbjct: 2186 SFRVVDQQQVE--RHFTMNELTEL 2207
Score = 102 bits (253), Expect = 3e-21
Identities = 98/423 (23%), Positives = 187/423 (44%), Gaps = 58/423 (13%)
Query: 85 DEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERA 144
+E+ ++ E+ + E+ +E+ +DS + KK+++ ++ ++ + E
Sbjct: 1443 EEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEE 1502
Query: 145 GQNDEDETPQKKKQKKEAIQ------------TLMKRDEPKDEGSPSTSLSSSFMQPSFL 192
+ E +++++ +E I+ T + DE ++ P + + +
Sbjct: 1503 RRKRIAEREREREKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMV----- 1557
Query: 193 KNCQLKPYQKEGLNWLI---------TLYENGLNGILADEMGLGKTIQSIALLAFIYEMD 243
+LKP+Q +G+ ++ T G ILA MGLGKT+Q ++ L + D
Sbjct: 1558 --IKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCD 1615
Query: 244 TK--GPFLIAAPLSTVENWMNEFARFAPDIP------VLKYYNSEGQAARHAMMGKFFKN 295
L+ PL+T NWMNEF ++ + V + + R M+ ++ ++
Sbjct: 1616 KLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQED 1675
Query: 296 NKGEGVIITSYEII-------------IRDI--ELILSYQWKFLIVDEGHRLKNINCKLI 340
GV+I YE+ +++I + ++ F++ DEGH LKN +
Sbjct: 1676 G---GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVS 1732
Query: 341 RELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSE 400
+ + I + R++LTGTPLQNNL E ++NFI N+ + F F N + +
Sbjct: 1733 KAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADS 1792
Query: 401 KLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYK 460
+ + + K L+ +L ++R L LPPK EY++ +T +Q K Y+
Sbjct: 1793 TMVDV---RVMKKRAHILYEMLAG-CVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQ 1848
Query: 461 QAL 463
L
Sbjct: 1849 YYL 1851
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 117 bits (292), Expect = 9e-26
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 26/204 (12%)
Query: 560 TDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSEL--------- 610
TD E +L+ SGK+ +L +++ + KVL+FSQ + LDLIED+ EL
Sbjct: 1803 TDADAE-VLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDK 1861
Query: 611 -------------NNFISCRIDGSMQNNSRKEQIEEFSKKGS-KANLFLLSTRAAGLGIN 656
N R+DGS SRK+ EEF+ + + + LF++ST+A LGIN
Sbjct: 1862 DKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGIN 1921
Query: 657 LTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
L AA+ VIIFD+ WNP D+Q++ R +R GQTKPV VYR T+E+ I R V K+ L
Sbjct: 1922 LVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSL 1981
Query: 717 EKLVIQMGKFNTLKKLAFNEQTFL 740
V+ + + NE T L
Sbjct: 1982 SFRVVDQQQVE--RHFTMNELTEL 2003
Score = 102 bits (253), Expect = 3e-21
Identities = 98/423 (23%), Positives = 187/423 (44%), Gaps = 58/423 (13%)
Query: 85 DEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERA 144
+E+ ++ E+ + E+ +E+ +DS + KK+++ ++ ++ + E
Sbjct: 1239 EEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEE 1298
Query: 145 GQNDEDETPQKKKQKKEAIQ------------TLMKRDEPKDEGSPSTSLSSSFMQPSFL 192
+ E +++++ +E I+ T + DE ++ P + + +
Sbjct: 1299 RRKRIAEREREREKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMV----- 1353
Query: 193 KNCQLKPYQKEGLNWLI---------TLYENGLNGILADEMGLGKTIQSIALLAFIYEMD 243
+LKP+Q +G+ ++ T G ILA MGLGKT+Q ++ L + D
Sbjct: 1354 --IKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCD 1411
Query: 244 TK--GPFLIAAPLSTVENWMNEFARFAPDIP------VLKYYNSEGQAARHAMMGKFFKN 295
L+ PL+T NWMNEF ++ + V + + R M+ ++ ++
Sbjct: 1412 KLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQED 1471
Query: 296 NKGEGVIITSYEII-------------IRDI--ELILSYQWKFLIVDEGHRLKNINCKLI 340
GV+I YE+ +++I + ++ F++ DEGH LKN +
Sbjct: 1472 G---GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVS 1528
Query: 341 RELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSE 400
+ + I + R++LTGTPLQNNL E ++NFI N+ + F F N + +
Sbjct: 1529 KAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADS 1588
Query: 401 KLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYK 460
+ + + K L+ +L ++R L LPPK EY++ +T +Q K Y+
Sbjct: 1589 TMVDV---RVMKKRAHILYEMLAG-CVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQ 1644
Query: 461 QAL 463
L
Sbjct: 1645 YYL 1647
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 117 bits (292), Expect = 9e-26
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 26/204 (12%)
Query: 560 TDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSEL--------- 610
TD E +L+ SGK+ +L +++ + KVL+FSQ + LDLIED+ EL
Sbjct: 1969 TDADAE-VLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDK 2027
Query: 611 -------------NNFISCRIDGSMQNNSRKEQIEEFSKKGS-KANLFLLSTRAAGLGIN 656
N R+DGS SRK+ EEF+ + + + LF++ST+A LGIN
Sbjct: 2028 DKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGIN 2087
Query: 657 LTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
L AA+ VIIFD+ WNP D+Q++ R +R GQTKPV VYR T+E+ I R V K+ L
Sbjct: 2088 LVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSL 2147
Query: 717 EKLVIQMGKFNTLKKLAFNEQTFL 740
V+ + + NE T L
Sbjct: 2148 SFRVVDQQQVE--RHFTMNELTEL 2169
Score = 102 bits (253), Expect = 3e-21
Identities = 98/423 (23%), Positives = 187/423 (44%), Gaps = 58/423 (13%)
Query: 85 DEKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERA 144
+E+ ++ E+ + E+ +E+ +DS + KK+++ ++ ++ + E
Sbjct: 1405 EEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEE 1464
Query: 145 GQNDEDETPQKKKQKKEAIQ------------TLMKRDEPKDEGSPSTSLSSSFMQPSFL 192
+ E +++++ +E I+ T + DE ++ P + + +
Sbjct: 1465 RRKRIAEREREREKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMV----- 1519
Query: 193 KNCQLKPYQKEGLNWLI---------TLYENGLNGILADEMGLGKTIQSIALLAFIYEMD 243
+LKP+Q +G+ ++ T G ILA MGLGKT+Q ++ L + D
Sbjct: 1520 --IKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCD 1577
Query: 244 TK--GPFLIAAPLSTVENWMNEFARFAPDIP------VLKYYNSEGQAARHAMMGKFFKN 295
L+ PL+T NWMNEF ++ + V + + R M+ ++ ++
Sbjct: 1578 KLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQED 1637
Query: 296 NKGEGVIITSYEII-------------IRDI--ELILSYQWKFLIVDEGHRLKNINCKLI 340
GV+I YE+ +++I + ++ F++ DEGH LKN +
Sbjct: 1638 G---GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVS 1694
Query: 341 RELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSE 400
+ + I + R++LTGTPLQNNL E ++NFI N+ + F F N + +
Sbjct: 1695 KAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADS 1754
Query: 401 KLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYK 460
+ + + K L+ +L ++R L LPPK EY++ +T +Q K Y+
Sbjct: 1755 TMVDV---RVMKKRAHILYEMLAG-CVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQ 1810
Query: 461 QAL 463
L
Sbjct: 1811 YYL 1813
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 113 bits (283), Expect = 1e-24
Identities = 74/212 (34%), Positives = 111/212 (51%), Gaps = 9/212 (4%)
Query: 571 SGKLQVLQKLVPELIK-KKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKE 629
SGKL+VL L+ + K K KV++ S + LD+IE+ + CR+DGS+ R
Sbjct: 663 SGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDS 722
Query: 630 QIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTK 689
+ F++ + FLLS ++ G+G+NL +I+FD+DWNP VDLQAM R HR GQ K
Sbjct: 723 IVTSFNRNPAIFG-FLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKK 781
Query: 690 PVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLAT 749
P +YRL I+ I+ R + K L + +G K + N+ F K + L +
Sbjct: 782 PCFIYRLVTTGCIDEKILQRQLMKNSLSQKF--LGDSEMRNKESSNDDLFNKEDLKDLFS 839
Query: 750 --TTKQSANKELV---KELSQLLISNETNQGQ 776
T +S +L+ L + + ETNQ Q
Sbjct: 840 VHTDTKSNTHDLICSCDGLGEEIEYPETNQQQ 871
Score = 105 bits (263), Expect = 2e-22
Identities = 81/274 (29%), Positives = 128/274 (46%), Gaps = 35/274 (12%)
Query: 219 ILADEMGLGKTIQSIALLAFIYEMDTKGPF--------------------LIAAPLSTVE 258
+LAD+MGLGKT+ SI L I+ + + PF L+ P++ +
Sbjct: 343 LLADDMGLGKTLMSITL---IWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIG 399
Query: 259 NWMNEFARFA--PDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELI 316
NW EF ++ I VL + + F K + V+I YE ++ E +
Sbjct: 400 NWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEEL 459
Query: 317 LSYQW--KFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFIL 374
+ L+ DEGHRLKN K++ LK ++ +LLLTGTP+QN+L E +++++FI
Sbjct: 460 EKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFIN 519
Query: 375 PNIFSDFEIFNKWFDFSDLNLESSSEKLTKII---NDELEKNLISNLHTILKPFLLRRLK 431
P I F F + F ++ + + + +E K +I I K F+LRR
Sbjct: 520 PGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIE----ITKRFILRRTN 575
Query: 432 KNVLAGSLPPKREYIITCPVTPLQKKYYKQALKG 465
+L LPPK + I+ C Q +K L+G
Sbjct: 576 A-ILEKYLPPKTDIILFCKPYSQQILAFKDILQG 608
>Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 220
Score = 112 bits (280), Expect = 2e-24
Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Query: 204 GLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIY-EMDTKGPFLIAAPLSTVENWMN 262
G NWL + IL DEMGLGKT Q+IAL ++ ++ +GPFLI P E
Sbjct: 15 GSNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPYVCFEQLER 74
Query: 263 EFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELILSYQWK 322
A + + + + A + + K V++T+YEI ++D + S+ W
Sbjct: 75 RNAEICSRSFLCNICSDKEE---RACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWS 131
Query: 323 FLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFE 382
L+VDE HRLKN + L + L + LLLTGTP+QN+L EL+SLL+F+ P++FS E
Sbjct: 132 VLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEE 191
>Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 619
Score = 112 bits (280), Expect = 2e-24
Identities = 61/130 (46%), Positives = 82/130 (62%), Gaps = 5/130 (3%)
Query: 188 QPSFL-KNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKG 246
QPS L ++ LKPYQK GLNWL ++++GLNGILADEMGLGKTIQ+IA LA++Y+ G
Sbjct: 487 QPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNG 546
Query: 247 PFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSY 306
P LI P ST++NW+ E + P + VL YY S Q R + + VI+T
Sbjct: 547 PHLIVVPASTIDNWLREVNLWCPTLKVLCYYGS--QEERKQIRFNIHSRYEDYNVIVT-- 602
Query: 307 EIIIRDIELI 316
+I +R L+
Sbjct: 603 DITVRSAVLM 612
>At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 1178
Score = 112 bits (279), Expect = 3e-24
Identities = 152/624 (24%), Positives = 269/624 (42%), Gaps = 111/624 (17%)
Query: 197 LKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALL-AFIYEMDTKGPFLIAAPLS 255
L P+Q +GL + + G +ADEMGLGKT+Q+IA+ FI E G L+ P
Sbjct: 204 LLPFQLDGLRFGL---RRGGRCFIADEMGLGKTLQAIAIAGCFISE----GSILVVCPAV 256
Query: 256 TVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIEL 315
W E R+ P + G A + ++ K V++ SY+++
Sbjct: 257 LRFTWAEELERWLPSCLPSDVHLVFGHQDNPAYLPRWPK------VVVISYKMLQHLRTT 310
Query: 316 ILSYQWKFLIVDEGHRLKNINCKL-IRELKRI-----NTSNRLLLTGTPLQNNLGELW-- 367
+L +W LIVDE H L+ K E+K + + +LL+GTP + G L
Sbjct: 311 MLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSGTPSVSRPGLLGKD 370
Query: 368 -----------SLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLIS 416
L+ I IF DF K T++ LE N++
Sbjct: 371 KYEFAKTYCEVGLVRGIQGKIFQDF------------------SKGTRL----LELNILL 408
Query: 417 NLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAI 476
N + ++RRLK+++L LPPKR I+T + K AL + +KQ
Sbjct: 409 N-----QTVMIRRLKQHLLT-QLPPKRRQIVT-----ILLKKSDIALAMAIVSEAKKQ-- 455
Query: 477 KDFFTLNAEYIGTVSNKSIRDFIE-WKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRL 535
KD +++ R E ++A++ D PN + K +L +++L +L
Sbjct: 456 KDGAIAEVTEKSHEPDQNARGSNEAGHVNAENSDGPNSD--KENQLCGKLSYQQLGIAKL 513
Query: 536 QNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFS 595
+L PLL D T E + + + K+++F+
Sbjct: 514 SAF---------REWLSLHPLLSGLDYTPEEI---------------DGDRSSTKMVVFA 549
Query: 596 QFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGI 655
+LD I+++ RIDG+ R+ ++ F + S+ + ++ A G+G+
Sbjct: 550 HHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSF-QFSSEVKIAIIGVEAGGVGL 608
Query: 656 NLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRK 715
+ +AA +V+ + P + LQA DRAHR GQT V VY +T++ N +
Sbjct: 609 DFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDE------SNWQN 662
Query: 716 LEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQG 775
L K ++ + ++ ++ +T +++ G+S+ ++S+ +E+++ +E+N
Sbjct: 663 LNK---KLHRISSTTDGKYDGKTEIEIGGASIFKPAEESSEREVLEGQ-----PSESNTV 714
Query: 776 QADTSKIENSDDILEESEMKELLD 799
AD +E+ DD E+++ +D
Sbjct: 715 VAD-KIVESCDDPGTETDVSNTID 737
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 109 bits (273), Expect = 2e-23
Identities = 93/300 (31%), Positives = 139/300 (46%), Gaps = 35/300 (11%)
Query: 197 LKPYQKEGLNWLITLYENGLNG-------ILADEMGLGKTIQSIALLAFIYEMDTKGP-- 247
L+P+Q+EG+ ++ +GL+G ILAD+MGLGKT+QSI LL + G
Sbjct: 76 LRPHQREGVQFMFDCV-SGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPM 134
Query: 248 ---FLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIIT 304
+I P S V NW E ++ D L + + + F + V+I
Sbjct: 135 VKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLII 194
Query: 305 SYEII-IRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNL 363
SYE + + S LI DE HRLKN R L + R+LL+GTP+QN+L
Sbjct: 195 SYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDL 254
Query: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISN----LH 419
E ++++NF P D F +++ + + E EKNL ++ L
Sbjct: 255 EEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTA-------TEEEKNLAADRSAELS 307
Query: 420 TILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYY---------KQALKGNLKQT 470
+ + F+LRR +L+ LPPK ++ C +T LQ Y K+AL N KQT
Sbjct: 308 SKVNQFILRRTNA-LLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAKQT 366
Score = 95.5 bits (236), Expect = 3e-19
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Query: 568 LKTSGKLQVLQKLVPELIKKKH-KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
++ SGK+ VL +L+ L +K ++++ S + LDL + R+DGS +
Sbjct: 426 VELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISK 485
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R++ + + FLLS++A G G+NL A+ +++FD DWNP D QA R R G
Sbjct: 486 RQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDG 545
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
Q K V VYR TIE + R ++K L+K++
Sbjct: 546 QKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 579
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 109 bits (272), Expect = 2e-23
Identities = 114/418 (27%), Positives = 197/418 (46%), Gaps = 69/418 (16%)
Query: 86 EKSAGRKASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLERAG 145
+K GRK + ++ D D + + + K K +++ ++ + D + A
Sbjct: 351 QKKKGRKRIKKTSSGESDGDGDDDKQKN----KRKHIRKIIKTKDL------DLTTKEAA 400
Query: 146 QNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQ--------L 197
+ ++D ++++ E Q L R K E L F + S Q L
Sbjct: 401 KEEDD-----RRKRIEDRQKLYNRIFVKSESVEINELVLDFDEESKKALLQVDKGLLKKL 455
Query: 198 KPYQKEGLNWLI-----TLYEN----GLNGILADEMGLGKTIQSIALLAFIYEMDTKGP- 247
KP+Q G+ ++ TL E+ G ILA MGLGKT+Q + L+ ++T+
Sbjct: 456 KPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQ-VVTLSHTLLVNTRRTG 514
Query: 248 ---FLIAAPLSTVENWMNEFA---RFAP--DIPVLKYYNSEGQAARHAMMGKFFKNNKGE 299
LI +PLSTV NW EF +FA DI V + + R + ++F N+G
Sbjct: 515 VDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIFKLNEWF--NEG- 571
Query: 300 GVIITSYEI--IIRD--------------IELILSYQWKFLIVDEGHRLKNINCKLIREL 343
GV I Y++ I+ + ++ ++ ++ DEGH LKN + + +
Sbjct: 572 GVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAV 631
Query: 344 KRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDF-EIFNKWFD-FSDLNLESSSEK 401
R+ T R++LTGTPLQNNL E + ++ F+ PN+ + E N++ + ++ S+E+
Sbjct: 632 TRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTER 691
Query: 402 LTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYY 459
+++ K+ LH +L+ + RR +VLA LPPK EY++ ++ LQ+K Y
Sbjct: 692 DLRLM-----KHRSHILHKLLEGCIQRR-DYSVLAPYLPPKHEYVVYTTLSELQQKLY 743
Score = 107 bits (266), Expect = 1e-22
Identities = 80/268 (29%), Positives = 127/268 (46%), Gaps = 34/268 (12%)
Query: 555 PLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDW------- 607
P +E +L N + S KL +L +L+ + K+L+FSQ + LD+IE +
Sbjct: 884 PFVEEREL---NNVHHSPKLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSN 940
Query: 608 -------SELNNFISC--------RIDGSMQNNSRKEQIEEFSK-KGSKANLFLLSTRAA 651
++ +F C R+DGS R+ ++F+ +A LFL+STRA
Sbjct: 941 TKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAG 1000
Query: 652 GLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAV 711
GLGINL AA+ V+IFD WNP D Q++ R +R GQ KP +YRL T+E + R V
Sbjct: 1001 GLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQV 1060
Query: 712 NKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNE 771
K+ K VI + + +N+ +++ L K S +E+ L +
Sbjct: 1061 AKQATAKRVIDEQQISR----HYNQTDLMELYSYEL----KPSTEREMPILPKDRLFAEI 1112
Query: 772 TNQGQADTSKIENSDDILEESEMKELLD 799
+ + K D +LE+ E + L +
Sbjct: 1113 LTEHEKLIFKYHEHDSLLEQEEHENLTE 1140
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 106 bits (265), Expect = 1e-22
Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 569 KTSGKLQVLQKLVPELI--KKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNS 626
K+S KL ++ + ++I K+ K+L++SQF L L+ +L N R DG+M N
Sbjct: 720 KSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQ 779
Query: 627 RKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
R++ + F+ + L+S +A +G+NLT A+ VI+ + +NP ++ QA+DR HR+G
Sbjct: 780 RQKSLHSFNND-KDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLG 838
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFL 740
Q KPV VYR +TIE I++ KR+L K + + N L +L E +L
Sbjct: 839 QQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELLYL 892
Score = 82.8 bits (203), Expect = 2e-15
Identities = 75/340 (22%), Positives = 151/340 (44%), Gaps = 45/340 (13%)
Query: 153 PQKKKQKKEAI----QTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWL 208
P ++K + E + L++ + P + L + +Q + L L P+Q EG W+
Sbjct: 203 PYERKVQPEHVTKELHQLLQHNTPSPFDTIDLQLKNEQVQSAGLL-VSLLPHQVEGHAWM 261
Query: 209 ITLYENG-LNGILADEMGLGKTIQSIALLAFIYEMDT-KGPFLIAAPLSTVENWMNEFAR 266
++ ++ G++AD+MGLGKTIQ+IALL D + LI ++ + W E +
Sbjct: 262 ESMEQSSKCGGVMADDMGLGKTIQTIALLLTQKSQDPLRKTNLIVVSVALLHQWAEELST 321
Query: 267 FAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIEL----------- 315
L Y G ++ + + + V++T+Y ++ +++
Sbjct: 322 KVHPSKKLSVYIHHGSTKKNLDSYELSQYD----VVLTTYSMLAYEMKQNDAFNNNNPAT 377
Query: 316 --------ILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELW 367
+L W +++DE H ++N + + +++ R L+GTP+QN++ E +
Sbjct: 378 ATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFY 437
Query: 368 SLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLL 427
SLL F+ + + +F K D S + K ++ + + L +L +
Sbjct: 438 SLLKFLRIKPYCVWSLFAK--DIS---------RPLKSYRADIVEAALKRLRILLASTVF 486
Query: 428 RRLKK----NVLAGSLPPKREYIITCPVTPLQKKYYKQAL 463
RR K+ N+ +LPPK ++ + P ++ Y + +
Sbjct: 487 RRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQM 526
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 106 bits (264), Expect = 2e-22
Identities = 87/285 (30%), Positives = 143/285 (49%), Gaps = 25/285 (8%)
Query: 197 LKPYQKEGLNWLITLYENGLN------GILADEMGLGKTIQSIALLAFIYEMD-----TK 245
L+P+Q++G+ ++ G+N I+ADEMGLGKT+Q I+LL + T
Sbjct: 202 LRPHQRDGVKFMWDCV-TGINIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDACPTV 260
Query: 246 GPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGE---GVI 302
+I P S V+NW E ++ +S + A + F ++K V+
Sbjct: 261 SKSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMRCAIPVL 320
Query: 303 ITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNN 362
I SYE ++ S +I DEGHRLKN + L + + R+L++GTP+QN+
Sbjct: 321 IISYETFRLYANILHSGDVGIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQND 380
Query: 363 LGELWSLLNFILPNIFSDFEIFNKWFDFSDL---NLESSSEKLTKIINDELEKNLISNLH 419
L E +SL+NF+ P + F K F+ + L + ++SSE K +E K +IS
Sbjct: 381 LLEYFSLVNFVNPGLLGTASEFRKKFENAILKGRDADASSEDQKK--GEEKTKEMIS--- 435
Query: 420 TILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALK 464
+++ ++RR +L LP K E+II C + LQ+ Y + ++
Sbjct: 436 -LVEKCIIRRTSA-LLTKYLPVKYEHIICCKNSTLQETLYNKLIE 478
Score = 97.8 bits (242), Expect = 6e-20
Identities = 66/232 (28%), Positives = 107/232 (45%), Gaps = 25/232 (10%)
Query: 519 EKLYDMHIHKELLNKRLQ----------NMMIQLRQIVNSTYLFYFPLLEPTDLTLENLL 568
E LY+ I E N+ ++ + + L+++ N YL Y +P + L
Sbjct: 470 ETLYNKLIECEKQNRIVEKDKGATASALSFITHLKKLCNHPYLVYDEFQKPDNRFRNKCL 529
Query: 569 KT--------------SGKLQVLQKLVPELIKKKH-KVLIFSQFVSMLDLIEDWSELNNF 613
SGK++VL ++ K K ++ S + +D + +L +
Sbjct: 530 SIFPESFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGY 589
Query: 614 ISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQ 673
R+DGSM R + ++ F+ S FLLS++A G G+NL A+ +++FD DWNP
Sbjct: 590 DFVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPA 649
Query: 674 VDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGK 725
D QAM R R GQ K +YRL +IE + R +K+ L V+ G+
Sbjct: 650 NDDQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGE 701
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 105 bits (262), Expect = 3e-22
Identities = 56/103 (54%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 639 SKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYC 698
S +F+LSTRA GLG+NL AD+VIIFD+DWNP DLQA DRAHRIGQTK V + RL
Sbjct: 4 SDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLIT 63
Query: 699 DNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLK 741
+ +IE I++RA K L+ VIQ GKF+ K + FL+
Sbjct: 64 EKSIEENILSRAQYKLDLDGKVIQAGKFDN-KSTPEEREAFLR 105
>At3g42670 [L] KOG0390 DNA repair protein SNF2 family
Length = 1256
Score = 104 bits (260), Expect = 5e-22
Identities = 125/546 (22%), Positives = 224/546 (40%), Gaps = 89/546 (16%)
Query: 219 ILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVL---- 274
+++ G GKT IA LA ++ L+ AP +T+ W EF ++ +PV
Sbjct: 709 VVSHTPGAGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHG 768
Query: 275 ---------KYYNSEG-----QAARHAM--MGKFFKNNKGEGVII---TSYEIIIRD--- 312
K EG Q H + + K K + V++ TS+ ++R+
Sbjct: 769 RRTYCMSKEKTIQFEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSK 828
Query: 313 ------IELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGEL 366
+ +L L++DEGH ++ +L + L +++T R+LL+GT QNN E
Sbjct: 829 FAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEY 888
Query: 367 WSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFL 426
++ L P + + EL+K +N P L
Sbjct: 889 FNTLCLARPKFVHEVLV-------------------------ELDKKFQTNQAEQKAPHL 923
Query: 427 LRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKG-NLKQTIQKQAIKDFFTLNAE 485
L R++ + + K + L+G N+ + + I ++ E
Sbjct: 924 LENRA-----------RKFFLDIIAKKIDTKVGDERLQGLNMLRNMTSGFIDNY-----E 967
Query: 486 YIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQI 545
G+ S + + L +S D+ + ++ K++ + + H L L + +
Sbjct: 968 GSGSGSGDVLPGLQIYTLLMNSTDVQHKSLTKLQNIMSTY-HGYPLELELLITLAAIHPW 1026
Query: 546 VNSTYLFYFPLLEPTDLT----LENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVS-- 599
+ T P +L L++ K K+ + LV ++K++ K+LIF ++
Sbjct: 1027 LVKTTTCCAKFFNPQELLEIEKLKHDAKKGSKVMFVLNLVFRVVKRE-KILIFCHNIAPI 1085
Query: 600 --MLDLIED---WSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLG 654
L+L E+ W ++ + G ++ R I++F + G ++ + L S A G
Sbjct: 1086 RLFLELFENVFRWKRGRELLT--LTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEG 1143
Query: 655 INLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKR 714
I+LTAA VI+ DS+WNP QA+ RA R GQ K V VY+L T+E R K
Sbjct: 1144 ISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKE 1203
Query: 715 KLEKLV 720
+ ++
Sbjct: 1204 WVSSMI 1209
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 104 bits (259), Expect = 6e-22
Identities = 114/438 (26%), Positives = 188/438 (42%), Gaps = 88/438 (20%)
Query: 295 NNKG----EGVI-ITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRI--N 347
N KG +GV I SY+++ + +L+++ +K +I DE H LKN K +
Sbjct: 288 NTKGTIHLDGVFNIVSYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKK 347
Query: 348 TSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWF--DFSDLNLESSSEKLTK- 404
+LL+GTP + EL+ L + P+++ + + + S L++E K
Sbjct: 348 AQYAILLSGTPALSRPIELFKQLEALYPDVYRNIHEYGGRYCKGVSPLHIEKLPRSSYKG 407
Query: 405 IINDELEKNLISNLHTILKP-FLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQAL 463
+ LH ++K ++RRLKK+VL LP KR
Sbjct: 408 FFGTYQGASNHDELHNLMKATVMIRRLKKDVLT-ELPSKRR------------------- 447
Query: 464 KGNLKQTIQKQAIKDFFTLNAEY--IGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKL 521
+Q A KD +NA + + V +K I+D I D+I ++
Sbjct: 448 ----QQVFLDLAAKDMKQINALFHELKVVKSK-IKDCIS-----------EDDIKSLK-- 489
Query: 522 YDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLV 581
I K L+NK + + K+ + +
Sbjct: 490 ---FIEKNLINKIYTDSAV-------------------------------AKIPAVLDYL 515
Query: 582 PELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKA 641
+I+ K L+F+ SML+ + + + RIDGS +SR+ + +F K +
Sbjct: 516 ENVIEAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDK-DEI 574
Query: 642 NLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNT 701
+LS RAAG+GI LTAA +VI + W P +QA DRAHRIGQ V ++ L ++T
Sbjct: 575 KAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDT 634
Query: 702 IENVIMTRAVNKRKLEKL 719
++++I V + KL+ L
Sbjct: 635 VDDIIWD--VVQSKLDNL 650
>At2g16390 [L] KOG0390 DNA repair protein SNF2 family
Length = 888
Score = 103 bits (256), Expect = 1e-21
Identities = 127/571 (22%), Positives = 238/571 (41%), Gaps = 107/571 (18%)
Query: 196 QLKPYQKEGLNWLIT-LYENGLNG-ILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAP 253
++KP+Q EG +L + L + G I+A G GKT I+ + + L+ P
Sbjct: 349 EMKPHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKPLVVLP 408
Query: 254 LSTVENWMNEFARF-APDIPVLKYYNS--EGQAARHAMMGKFFKNNKGEGVIITSYE--- 307
+ W EF R+ DIP+L +Y++ E +A + +++ ++ + + ++ Y+
Sbjct: 409 KGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEK---KSILFLGYQQFS 465
Query: 308 -IIIRDIELILSYQW------KFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQ 360
I+ D LS Q LI+DEGH +N + L++ L ++ T +++L+GT Q
Sbjct: 466 TIVCDDTTDSLSCQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQ 525
Query: 361 NNLGELWSLLNFILPNIF---SDFEIFNKWFDFSDLN----LESSSEKLTKIINDELEKN 413
N++ E++++LN + P + + ++ + L S+ + + N+ +E
Sbjct: 526 NHVKEVFNILNLVRPKFLKLDTSKSAVKRILAYTPCDVRGRLTGSNSDMASMFNETVEHT 585
Query: 414 LISNLHTILKPFL---LRRLKKNVL-------AGSLPPKREYIITCPVTPLQKKYYKQAL 463
L + +K + LR + K VL LP ++ + ++P Q K+
Sbjct: 586 LQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDELPGLADFTVVLNLSPKQLNEVKKLR 645
Query: 464 KGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYD 523
+ K F ++A + ++ F S S D+ + + +M + D
Sbjct: 646 REKRK-----------FKVSAVGSAIYLHPKLKVF-----SDKSDDVSDTTMDEMVEKLD 689
Query: 524 MHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPE 583
L + V + + L L NL ++G+
Sbjct: 690 ------------------LNEGVKAKFF----------LNLINLCDSAGE---------- 711
Query: 584 LIKKKHKVLIFSQFVSMLDLIEDWSELNN--------FISCRIDGSMQNNSRKEQIEEFS 635
K+L+FSQ++ L +E + L F+ + G+ + R+ +E F+
Sbjct: 712 ------KLLVFSQYLIPLKFLERLAALAKGWKLGKEVFV---LTGNTSSEQREWSMETFN 762
Query: 636 KKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYR 695
A +F S +A G GI+L A ++I D NP V QA+ RA R GQ K V YR
Sbjct: 763 -SSPDAKIFFGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYR 821
Query: 696 LYCDNTIENVIMTRAVNKRKLEKLVIQMGKF 726
L ++ E K + K+ + ++
Sbjct: 822 LIAGSSPEEEDHNTCFKKEVISKMWFEWNEY 852
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 102 bits (254), Expect = 2e-21
Identities = 60/173 (34%), Positives = 97/173 (55%), Gaps = 19/173 (10%)
Query: 565 ENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIED----------------WS 608
E +L+ K+ + +++ E + K+LIFSQ ++ LD++E+ W
Sbjct: 770 EGVLENGYKIVISLEILDESTQIGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWE 829
Query: 609 ELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDS 668
+ N++ R+DG+ R++ I F+ + +LFL+STRA LGINL +A+ II D+
Sbjct: 830 KNRNYL--RLDGTTSGADREKLINRFNSEPG-LSLFLISTRAGSLGINLVSANRCIIIDA 886
Query: 669 DWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVI 721
WNP D QA+ R +R GQ K VYRL DN++E I R ++K L++ V+
Sbjct: 887 CWNPCHDAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVV 939
Score = 65.1 bits (157), Expect = 4e-10
Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 324 LIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEI 383
++ DEGH++KNI ++ L INT R++LTG PLQNNL E + +++F+ P +
Sbjct: 460 VVCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFCMIDFVRPKYLGTRKS 519
Query: 384 FNKWFDFSDLN---LESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLP 440
F F+ N ++SS + + L++ + L ++K F+ RR ++L LP
Sbjct: 520 FIDRFEKPIKNGQCVDSSPDD----VKIALQRTHV--LVELVKGFVQRR-THHLLKKILP 572
Query: 441 PKREYIITCPVTPLQKKYYK 460
+EY++ + +Q++ Y+
Sbjct: 573 ESKEYVLLLRKSQIQRQLYR 592
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 102 bits (254), Expect = 2e-21
Identities = 131/571 (22%), Positives = 230/571 (39%), Gaps = 114/571 (19%)
Query: 197 LKPYQKEGLNWLI-----TLYENGLNG---------ILADEMGLGKTIQSIALLAFIYEM 242
L P+Q+EG ++ T N LN I++ + G GKT ++ L +
Sbjct: 577 LYPHQQEGFEFIWKNLAGTTKINELNSVGVKGSGGCIISHKAGTGKTRLTVVFLQSYLKR 636
Query: 243 DTKGPFLIAAPLSTVENWMNEFARFAPDIPVLK--------YYNSEG----------QAA 284
++ AP + + W +E ++ +IP Y ++E +
Sbjct: 637 FPNSHPMVIAPATLMRTWEDEVRKWNVNIPFYNMNSLQLSGYEDAEAVSRLEGNRHHNSI 696
Query: 285 RHAMMGKFFKNNKGEGVIITSYEIIIRD--------IELILSYQWKFLIVDEGHRLKNIN 336
R + ++K G+ YE + + +L L++DEGH +N +
Sbjct: 697 RMVKLVSWWKQKSILGISYPLYEKLAANKNTEGMQVFRRMLVELPGLLVLDEGHTPRNQS 756
Query: 337 CKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLE 396
+ + L + T R+ L+GT QNN EL ++L P I ++ + S + E
Sbjct: 757 SLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLCLARPA--DKDTISSRIHELSKCSQE 814
Query: 397 SSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYIITCPVTPLQK 456
++ E+N I +L ++ F+ + +L SLP R+ ++
Sbjct: 815 GEHGRVN-------EENRIVDLKAMIAHFVHVH-EGTILQESLPGLRDCVVV-------- 858
Query: 457 KYYKQALKGNLKQTIQKQAIKDFFTLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIG 516
L Q++ I D ++++ +F E KLSA S
Sbjct: 859 ----------LNPPFQQKKILDRID---------TSQNTFEF-EHKLSAVSVHPSLYLCC 898
Query: 517 KMEKLYDMHIHKELLNKRLQNMMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQV 576
K D+ I L L+ + ++ + V + +L F ++ SG +
Sbjct: 899 NPTKKEDLVIGPATLGT-LKRLRLKYEEGVKTKFLIDF-------------IRISGTV-- 942
Query: 577 LQKLVPELIKKKHKVLIFSQFVSMLDLIE-------DWSELNNFISCRIDGSMQNNSRKE 629
K KVL++SQ++ L LI DW+E + + G ++ R+
Sbjct: 943 -----------KEKVLVYSQYIDTLKLIMEQLIAECDWTEGEQILL--MHGKVEQRDRQH 989
Query: 630 QIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTK 689
I+ F+K S + + L ST+A GI+L A V+I D WNP V+ QA+ RA RIGQ +
Sbjct: 990 MIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKR 1049
Query: 690 PVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
V +Y L +T E + K ++ +LV
Sbjct: 1050 AVFIYHLMVKDTSEWNKYCKQSEKHRISELV 1080
>7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1534
Score = 102 bits (253), Expect = 3e-21
Identities = 110/436 (25%), Positives = 188/436 (42%), Gaps = 88/436 (20%)
Query: 97 DAAKNEDSDENFENDSHTISLKIKKLQEF------VQQSQVYS---SIIADTLLERAGQN 147
D + E + + F+ DS++ SL +++ VQ S+V + S D +L +
Sbjct: 270 DFPEEEIASDTFD-DSNSSSLSGGSIEDVLHKGASVQPSEVVTIDDSSDDDCIL--LSEE 326
Query: 148 DEDETPQKKKQKKEAIQTLMKRDE----PKDEGSPSTSLS------SSFMQPSFLKNCQL 197
+E+E + + +A + M + P + G +++ + ++ P K +
Sbjct: 327 EEEEDDEDLNESDDATNSGMHVKDIYNVPDENGQVVVNMAHPEGEETLYLAPQIAK--VI 384
Query: 198 KPYQKEGLNWLITLYEN------------GLNGILADEMGLGKTIQSIALLAFIYEMDTK 245
KP+Q G+ +L Y+N G ILA MGLGKT+Q ++ +
Sbjct: 385 KPHQIGGVRFL---YDNIIESTRRYNKSSGFGCILAHSMGLGKTLQVVSFCDIFLRHTSA 441
Query: 246 GPFLIAAPLSTVENWMNEFARFAP-------------DIPVLKYYNSEGQAARHAMMG-- 290
L P++T++NW++EF + P DI VL A ++
Sbjct: 442 KTVLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRNFDIFVLNDQQKTLTARAKVILNWV 501
Query: 291 ------------------KFFKNNKGEGVII------TSYEIIIRDIELILSYQWKFLIV 326
K K K +G +I +S +++ E ++ +I
Sbjct: 502 HDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGMDSSSDLMNLVYEALVKPGPDLVIC 561
Query: 327 DEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNK 386
DEGHR+KN + + LK I T R++LTG PLQNNL E W +++F+ PN F
Sbjct: 562 DEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNYLGTRTEFCN 621
Query: 387 WFDFSDLN---LESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKR 443
F+ N ++S+ + + +L + LH++L F+ RR VL +LP K
Sbjct: 622 MFERPIQNGQCVDSTPDDI------KLMRYRAHVLHSLLLGFVQRR-SHTVLQLTLPQKY 674
Query: 444 EYIITCPVTPLQKKYY 459
EY+I +T Q+K Y
Sbjct: 675 EYVILVKMTAFQRKLY 690
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 101 bits (252), Expect = 4e-21
Identities = 65/173 (37%), Positives = 96/173 (54%), Gaps = 10/173 (5%)
Query: 570 TSGKLQVLQKLVPELIKKK--HKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSR 627
TS K++ V E+IKK+ K+LIFSQFVS L+L G + R
Sbjct: 863 TSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAER 922
Query: 628 KEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQ 687
+ + F + + L+S +A +G+NLT A+ VII D WNP ++ QA+DRAHRIGQ
Sbjct: 923 NQALINF-EVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQ 981
Query: 688 TKPVIVYRLYCDNTIENVIMTRAVNKRKL------EKLVIQMGKFNTLKKLAF 734
KPV + R+ +NTIE ++ KR+L EK + ++ + NT K+L+F
Sbjct: 982 DKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISRLNT-KELSF 1033
Score = 101 bits (251), Expect = 5e-21
Identities = 91/363 (25%), Positives = 160/363 (44%), Gaps = 60/363 (16%)
Query: 132 YSSIIADTLLERAGQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSF 191
+ +I L + Q +D+ Q+ ++ + + + D EG+P+ + +
Sbjct: 337 FHNIEGFNLSDSNNQKVQDDQQQQLEELFKDLDEQLVNDPTIREGTPAGLIPT------- 389
Query: 192 LKNCQLKPYQKEGLNWLITLYENGLNG-ILADEMGLGKTIQSIALLAFIY-EMDTKGPFL 249
L +QKEGL WL L E+ G ILAD+MGLGKT+Q++ALL E + L
Sbjct: 390 -----LMEHQKEGLMWLKRLEESSKKGGILADDMGLGKTVQALALLVTRPPESKSVKTTL 444
Query: 250 IAAPLSTVENWMNEF-ARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEI 308
I P+S ++ W NE + AP Y + G + +H + + + +++T+Y +
Sbjct: 445 IITPVSLLQQWHNEILTKIAPSHRPTVYIH-HGSSKKHKIAEQLMSYD----IVLTTYNV 499
Query: 309 IIRDIELILSY---------------------QWKFLIVDEGHRLKNINCKLIRELKRIN 347
I + + ++Y +W +I+DE +KN N R +
Sbjct: 500 IAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYRVILDEAQTIKNRNTLAARGCCLLE 559
Query: 348 TSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFS-DLNLESSSEKLTKII 406
++ R L+GTP+QN + E +SL+ F+ +SD+ F+K F N+ +S+
Sbjct: 560 STYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAP------ 613
Query: 407 NDELEKNLISNLHTILKPFLLRRLKKNVLAG----SLPPKREYIITCPVTPLQKKYYKQA 462
+ +LK LLRR K + G +LPPK ++ + ++Y
Sbjct: 614 --------MKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTL 665
Query: 463 LKG 465
G
Sbjct: 666 QSG 668
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 100 bits (248), Expect = 1e-20
Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 25/245 (10%)
Query: 506 DSQDIPNDNIGKMEKLYDMHI---------HKELLNKRLQNMMIQLRQIVNSTYLFYFPL 556
D Q + N+ KLYD I H E L++ ++ IQ + + Y+ F
Sbjct: 1384 DCQRLTNEKDIVSHKLYDQVINQGFTEEDLHAEYLSE-MEKQKIQQKNV----YVPNFES 1438
Query: 557 LEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELN-NFIS 615
LEP+ K +QV+Q++ E K++IFSQF + +++E + + NF
Sbjct: 1439 LEPST-------KIEQCIQVIQRVFDE--SATEKIIIFSQFTTFFEILEHFLKNKLNFPY 1489
Query: 616 CRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVD 675
+ GSM R + I EF + K + L+S +A G+ LT A+ V+I D WNP V+
Sbjct: 1490 LKYIGSMNAQRRSDVINEFYRDPEK-RILLISMKAGNSGLTLTCANHVVIVDPFWNPYVE 1548
Query: 676 LQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFN 735
QA DR +RI QTK V V++L+ +++E+ I K+++ + GK + L
Sbjct: 1549 EQAQDRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVNSLGRR 1608
Query: 736 EQTFL 740
E FL
Sbjct: 1609 ELGFL 1613
Score = 76.3 bits (186), Expect = 2e-13
Identities = 80/339 (23%), Positives = 139/339 (40%), Gaps = 81/339 (23%)
Query: 158 QKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLN 217
+ +E I+ L++ + + +L+ M + LK +Q+ GL+WL+ + +
Sbjct: 910 EDQEQIRALLENVKQSESIIDGEALTPEDMTVNLLK------HQRLGLHWLLQVENSAKK 963
Query: 218 G-ILADEMGLGKTIQSIALLAFIYEMDTKGPF-LIAAPLSTVENWMNEFARFAPDIPVLK 275
G +LAD+MGLGKTIQ+IAL+ ++K LI AP+S + W E
Sbjct: 964 GGLLADDMGLGKTIQAIALMLANRSEESKCKTNLIVAPVSVLRVWKGEL----------- 1012
Query: 276 YYNSEGQAARHAMMGKFFKNNKGEG------------VIITSYEIIIRD----------- 312
E + + A F G G ++ SY+ + +
Sbjct: 1013 ----ETKVKKRAKFTTFIFGGSGNGKVKHWRDLARYDAVLVSYQTLANEFKKHWPKKLDG 1068
Query: 313 ----------------IELILSYQWKF---------LIVDEGHRLKNINCKLIRELKRIN 347
++ Y F +++DEG +KN N + + IN
Sbjct: 1069 EQNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFYRILLDEGQNIKNKNTRASKACCTIN 1128
Query: 348 TSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIIN 407
R +L+GTP+QN++ EL+SL+ F+ + + F D+ K + N
Sbjct: 1129 GMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHKEQRFK-----LDIGRFFQRNKQYQYDN 1183
Query: 408 DELEKNLISNLHTILKPFLLRRLKKNVLAG----SLPPK 442
++ KN + + +L +LRR K + + G LPPK
Sbjct: 1184 ED-RKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPK 1221
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 99.8 bits (247), Expect = 2e-20
Identities = 54/162 (33%), Positives = 93/162 (57%)
Query: 571 SGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQ 630
S K++ ++V +++KK KV+I SQ+ S+L+LIE + + F I G + R+E+
Sbjct: 916 SCKIKNTLEIVENIMEKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQER 975
Query: 631 IEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKP 690
++ F+++ A + LLS A G+G+NLT + +++ D WNP ++ QA DR +R+GQ K
Sbjct: 976 VDSFNREKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKD 1035
Query: 691 VIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKL 732
V ++RL TIE ++ +K L V+ + KL
Sbjct: 1036 VFIHRLVTKGTIEQRVVMLQKDKVALASSVLDGNATRKMNKL 1077
Score = 68.2 bits (165), Expect = 5e-11
Identities = 82/314 (26%), Positives = 123/314 (39%), Gaps = 92/314 (29%)
Query: 196 QLKPYQKEGLNWLI---TLYENGLNGILADEMGLGKTIQSIALLAF-------------- 238
+L P+QK GL W+ T + G GILAD+MGLGKT+ I+L+A
Sbjct: 470 ELMPHQKAGLTWMRWRETQPQPG--GILADDMGLGKTLSMISLIAHQKAARRARREDGND 527
Query: 239 ---------IYEMDT--KGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHA 287
+ E LI AP S + W E R D VL Y G +
Sbjct: 528 DKDKEKRKVVKEQGLIPSNGTLIVAPASLIHQWDAEIDRRLDD-SVLSTYMFHGTKKQRD 586
Query: 288 MMGKFFKNNKGEGVIITSYEIII---------------------------------RDIE 314
+ + V+IT++ +I +D
Sbjct: 587 IDARRLARYD---VVITTFNLIANELIEKIRTKSKADDSSDGESDSNHTGIRRAVGKDDS 643
Query: 315 LILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFIL 374
++ W +I+DE H +KN + + R++ +R L+GTP+ NNL +L+SL+ F+
Sbjct: 644 VLAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRFLR 703
Query: 375 PNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNV 434
FSD D + S + I+ D + NL++ K LLRR K
Sbjct: 704 IRPFSD-----------DKYWKESIMPMKPIMADRV--NLLT------KNLLLRRTKDQT 744
Query: 435 LAGS------LPPK 442
A + LPPK
Sbjct: 745 CAVTNQKLVQLPPK 758
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 98.6 bits (244), Expect = 3e-20
Identities = 50/154 (32%), Positives = 94/154 (60%), Gaps = 4/154 (2%)
Query: 566 NLLKTSGKLQ-VLQKLVPELIKKKH-KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQ 623
NL + S K+ V+Q L ++K K ++ SQ+ S+LD++ D + + ++G++
Sbjct: 884 NLHRPSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIP 943
Query: 624 NNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAH 683
+R++ + EF+ + ++ + LLS A G+G+NL A+ +++ D WNPQ++ QA DR +
Sbjct: 944 VKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIY 1003
Query: 684 RIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLE 717
R+GQ K VI+Y+ C +T+E I + + +KL+
Sbjct: 1004 RVGQKKNVIIYKFMCVDTVEQRI--KGLQDKKLD 1035
Score = 66.6 bits (161), Expect = 1e-10
Identities = 71/314 (22%), Positives = 130/314 (40%), Gaps = 75/314 (23%)
Query: 197 LKPYQKEGLNWLITLYENGL--NGILADEMGLGKTIQSIALLAFI---YEM--------- 242
L +QK L W+ + E L GILAD+MGLGKT+ I+ + EM
Sbjct: 439 LMNHQKHALAWM-SWRERKLPRGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSD 497
Query: 243 -----------------------DTK-GPFLIAAPLSTVENWMNEFARFAP--DIPVLKY 276
DT+ G L+ P S + W +E + V +
Sbjct: 498 SDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVH 557
Query: 277 YNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRD---IELILSYQWKFLIVDEGHRLK 333
+ + + GK+ ++ +++T+Y+I+ R+ + + +W+ +I+DE H ++
Sbjct: 558 HGNNRETK-----GKYLRDYD---IVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVR 609
Query: 334 NINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDL 393
N + + + R LTGTP+QN ++++LL F+ + F D + KW D
Sbjct: 610 NHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWID---- 665
Query: 394 NLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLA----GSLPPKREYIITC 449
N + + + L+ ++K +LRR K + + SLP K +I
Sbjct: 666 NKSAGGQ---------------NRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEI 710
Query: 450 PVTPLQKKYYKQAL 463
+ + Y+ +
Sbjct: 711 SLDKEEMNVYQTVM 724
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 98.2 bits (243), Expect = 5e-20
Identities = 54/127 (42%), Positives = 78/127 (60%), Gaps = 1/127 (0%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
K +IFSQ+ MLDL+E N+ R+DG+M +R ++EFS + ++S +
Sbjct: 903 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPD-VKVMIMSLK 961
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
A LG+N+ AA VI+ D WNP + QA+DRAHRIGQT+PV V R+ NT+E+ I+
Sbjct: 962 AGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILAL 1021
Query: 710 AVNKRKL 716
KRK+
Sbjct: 1022 QEEKRKM 1028
>At5g20420 [L] KOG0390 DNA repair protein SNF2 family
Length = 1261
Score = 97.8 bits (242), Expect = 6e-20
Identities = 117/529 (22%), Positives = 212/529 (39%), Gaps = 88/529 (16%)
Query: 219 ILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPV----- 273
+++ G GKT IA L ++ L+ AP +T+ W EF ++ +PV
Sbjct: 714 VISHSPGAGKTFLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHG 773
Query: 274 -----------LKYYNSEGQAARHAM-----MGKFFKNNKGEGVII---TSYEIIIRD-- 312
+N + +R M + K K + V++ TS+ ++R+
Sbjct: 774 RRTYCTFKQNKTVQFNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMREDS 833
Query: 313 -------IELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGE 365
+ +L L++DEGH ++ +L + L ++ T R+LL+GT QNN E
Sbjct: 834 KFAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCE 893
Query: 366 LWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPF 425
++ L P + + EL++ +N P
Sbjct: 894 YFNTLCLARPKFIHEVLM-------------------------ELDQKFKTNHGVNKAPH 928
Query: 426 LLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAE 485
LL + + + K + + L+G + K F N E
Sbjct: 929 LLENRARKLFLDIIAKK-----------IDASVGDERLQG---LNMLKNMTNGFID-NYE 973
Query: 486 YIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMIQLRQI 545
G+ S ++ + L +S DI + + K++ + + L LQ + +
Sbjct: 974 GSGSGSGDALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYPL-EVELQITLAAIHPW 1032
Query: 546 VNSTYLFYFPLLEPTDLT----LENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQ----- 596
+ ++ P +L+ L++ K K+ + L+ ++K++ K+LIF
Sbjct: 1033 LVTSSNCCTKFFNPQELSEIGKLKHDAKKGSKVMFVLNLIFRVVKRE-KILIFCHNIAPI 1091
Query: 597 --FVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLG 654
F + + I W ++ + G ++ R I++F + G+ + + L S A G
Sbjct: 1092 RMFTELFENIFRWQRGREILT--LTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEG 1149
Query: 655 INLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIE 703
I+LTAA VI+ DS+WNP QA+ RA R GQ K V VY+L T+E
Sbjct: 1150 ISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLE 1198
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 97.1 bits (240), Expect = 1e-19
Identities = 54/127 (42%), Positives = 78/127 (60%), Gaps = 1/127 (0%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
K +IFSQ+ MLDL+E + R+DG+M +R ++EFSKK + L+S +
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPD-VKVMLMSLK 952
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
A LG+N+ AA VI+ D WNP + QA+DRAHRIGQT+PV V R+ +T+E+ I+
Sbjct: 953 AGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKL 1012
Query: 710 AVNKRKL 716
KR +
Sbjct: 1013 QEEKRTM 1019
Score = 52.0 bits (123), Expect = 4e-06
Identities = 39/170 (22%), Positives = 74/170 (42%), Gaps = 22/170 (12%)
Query: 321 WKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSD 380
W +++DE +KN ++ R + R L+GTP+QN + +L+S F+ +
Sbjct: 542 WFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLR---YDP 598
Query: 381 FEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAG--- 437
+ ++ ++ + + +S + K L +L+ +LRR K +L G
Sbjct: 599 YAVYKSFYSTIKVPISRNSCQGYK------------KLQAVLRAIMLRRTKGTLLDGKPI 646
Query: 438 -SLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFFTLNAEY 486
+LPPK + + ++ +YK K Q +A D TL+ Y
Sbjct: 647 INLPPKVVNLSQVDFSVAERSFYK---KLEADSRSQFKAYADAGTLSQNY 693
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 95.9 bits (237), Expect = 2e-19
Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 5/151 (3%)
Query: 569 KTSGKLQVLQKLVPELIKK--KHKVLIFSQFVSMLDLIEDWSELNNFISC-RIDGSMQNN 625
KTS K++ L++ + ++++ K ++FSQF S LDLI ++ + +SC ++ GSM
Sbjct: 504 KTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLIS-YALGKSGVSCVQLVGSMSKA 562
Query: 626 SRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRI 685
++ ++ F K+ + L+S +A G+ +NLTAA V + D WNP V+ QA DR HRI
Sbjct: 563 AKDAALKNF-KEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRI 621
Query: 686 GQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
GQ KPV V R + T+E I+T K L
Sbjct: 622 GQCKPVRVVRFIMEKTVEEKILTLQKKKEDL 652
Score = 89.0 bits (219), Expect = 3e-17
Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 153 PQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLY 212
P K+K + ++ ++ E D + ++ + QP L LK YQKE L W T+
Sbjct: 91 PANTKRKWQIMKEKVQMTEDDDFDEQNAVIAEAAEQPLDLIIPLLK-YQKEFLAWA-TIQ 148
Query: 213 ENGL--NGILADEMGLGKTIQSIALLAFIYEMDTK------GPFLIAAPLSTVENWMNEF 264
E GILADEMG+GKTIQ+I+L+ E+D G L+ P + W++E
Sbjct: 149 ELSAVRGGILADEMGMGKTIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEI 208
Query: 265 ARFAP--DIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSY---EIIIRDIELILSY 319
+R VL+Y+ + +M F ++ Y E + + + S
Sbjct: 209 SRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSP-IVENEYRKDEGVDETMSPLHSI 267
Query: 320 QWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIF 378
+W +IVDE H +KN + + + + + + R L+GTPLQN++ EL+SL+++ N F
Sbjct: 268 KWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYSLVSYSFLNFF 326
>7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 701
Score = 95.9 bits (237), Expect = 2e-19
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 584 LIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANL 643
L+K++ K +IF+ M+D I D+ RIDG +++ R + ++ F KK S +
Sbjct: 531 LVKEQKKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSS-CKV 589
Query: 644 FLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIE 703
LLS +A GI LTAA+ ++ + DWNP QA RAHRIGQTKPVI L NT +
Sbjct: 590 ALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTAD 649
Query: 704 NVIMTRAVNKRKL 716
++I NK+++
Sbjct: 650 DIIWNMLKNKQEV 662
Score = 78.2 bits (191), Expect = 5e-14
Identities = 74/267 (27%), Positives = 123/267 (45%), Gaps = 47/267 (17%)
Query: 196 QLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLS 255
QL P+Q++G+ + I + G ++ DEMGLGKT Q++A+ + + P L+ S
Sbjct: 246 QLMPFQQDGVCFAIA--QKG-RIMICDEMGLGKTYQALAVADYFKD---DWPLLVCTTAS 299
Query: 256 TVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNK---GEG-VIITSYEIIIR 311
T ++W P +P+ H + + NN+ GE V+ITSY ++ R
Sbjct: 300 TRDSWAKHIMDLLPKVPI------------HYV--QVLNNNQLYVGEAKVLITSYNMMER 345
Query: 312 DIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNR--LLLTGTPLQNNLGELWSL 369
+ ++ ++ F+I DE H LKN K KR+ + +LL+GTP + EL++
Sbjct: 346 HEDKLMQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQ 405
Query: 370 LNFILPNIFSDFEIFNKWFDFS------DLNLESSSEKLTKIINDELEKNLISNLHTILK 423
L I + E ++ D D N +S+ E+L I++ LK
Sbjct: 406 LQMIDGKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILH--------------LK 451
Query: 424 PFLLRRLKKNVLAGSLPPKREYIITCP 450
++LRR K VL RE ++ P
Sbjct: 452 -YMLRRTKVEVLPQLAEKNRETVVLDP 477
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 95.5 bits (236), Expect = 3e-19
Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 569 KTSGKLQVLQKLVPELIKK--KHKVLIFSQFVSMLDLIEDWSELNNFISC-RIDGSMQNN 625
+TS K++ L++ + ++++ K ++FSQF S LDLI +++ +SC ++ GSM
Sbjct: 659 QTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLI-NYTLGKCGVSCVQLVGSMTMA 717
Query: 626 SRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRI 685
+R I +F K+ +FL+S +A G+ +NLT A V + D WNP V+ QA DR HRI
Sbjct: 718 ARDTAINKF-KEDPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRI 776
Query: 686 GQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFL 740
GQ KP+ V R +NT+E I+ R K++L G + KL + FL
Sbjct: 777 GQYKPIRVVRFIIENTVEERIL-RLQKKKELVFEGTVGGSQEAIGKLTEEDMRFL 830
Score = 63.2 bits (152), Expect = 2e-09
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 26/216 (12%)
Query: 86 EKSAGRKASSEDAAKNEDSDE---NFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLE 142
E+ G E A + D D F+ D + ++L+E V + + + ++
Sbjct: 20 EEGTGINPDEEPYAISSDDDSIGSEFQGDEE----EEEELEEVVANDDLPNPVPVLAIVN 75
Query: 143 RAGQNDEDETPQKKKQKKEAIQTLMKRD----------EPKDEGSPSTSLSSSFMQPSFL 192
+ + + P +K+K + +++ E D + ++ + PS L
Sbjct: 76 LPRASKKRKKPDARKEKVVLLWETWEKEQNSWIDEHMSEDVDLDQHNAVIAETAEPPSDL 135
Query: 193 KNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMD------TKG 246
L+ YQKE L W ++ GILADEMG+GKTIQ+I+L+ E+D G
Sbjct: 136 IMPLLR-YQKEFLAWATKQEQSVAGGILADEMGMGKTIQAISLVLARREVDRAQFGEAAG 194
Query: 247 PFLIAAPLSTVENWMNEFARFAP--DIPVLKYYNSE 280
L+ PL V W+NE ARF VL Y+ ++
Sbjct: 195 CTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAK 230
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 94.4 bits (233), Expect = 7e-19
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 9/177 (5%)
Query: 570 TSGKLQVLQKLVPELIKKKHKV--LIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSR 627
+S K+ L + +L KK + L+ SQF + L LIE + + F+ R+DGSM R
Sbjct: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
Query: 628 KEQIEEFSK-KGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIG 686
E I+ F + + LLS +A G+G+NL+AA V + D WNP + Q DR HR+G
Sbjct: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
Query: 687 QTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMN 743
Q + VI+ + +++E ++ KR+L G F T KK +E K+N
Sbjct: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL-----AAGAFGT-KKPNADEMKQAKIN 1001
Score = 82.0 bits (201), Expect = 3e-15
Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 34/234 (14%)
Query: 249 LIAAPLSTVENWMNEFARFAPDIPVLKYYNSEG--QAARHAMMGKFFKNNKGEGVIITSY 306
LI PLS + NW+++F + L +Y G + A++ K + +++T+Y
Sbjct: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSK-------QDIVLTTY 531
Query: 307 EIIIRDIEL-----ILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQN 361
I+ D + S +W +I+DEGH ++N N + + + + + R +LTGTP+QN
Sbjct: 532 NILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQN 591
Query: 362 NLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTI 421
+L +LWSLL+F+ F D E +++ + + + DE + L ++
Sbjct: 592 SLKDLWSLLSFLKLKPFIDREWWHR------------TIQRPVTMGDE---GGLRRLQSL 636
Query: 422 LKPFLLRRLKKNVLAG----SLPPKREYIITCPVTPLQKKYYKQALKGNLKQTI 471
+K LRR K + + G LP ++ +I ++ ++K Y Q++K + TI
Sbjct: 637 IKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY-QSVKNEGRATI 689
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 94.4 bits (233), Expect = 7e-19
Identities = 57/151 (37%), Positives = 85/151 (55%), Gaps = 5/151 (3%)
Query: 569 KTSGKLQVLQKLVPELIKKK---HKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNN 625
K S K+ L K + E IKK K ++FSQ+ S LDL+E F R DG +
Sbjct: 1106 KESSKVSELLKCL-EKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQK 1164
Query: 626 SRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRI 685
R++ ++EF++ K + L+S +A G+G+NLTAA SV + D WNP V+ QA+ R HRI
Sbjct: 1165 GREKVLKEFNETKQKT-ILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRI 1223
Query: 686 GQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
GQ + V V R +T+E + K+++
Sbjct: 1224 GQKRTVFVRRFIVKDTVEERMQQVQARKQRM 1254
Score = 76.3 bits (186), Expect = 2e-13
Identities = 89/400 (22%), Positives = 149/400 (37%), Gaps = 117/400 (29%)
Query: 154 QKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLI---- 209
++ K ++EA ++ M R G+ + PS L C L+PYQK+ L W+
Sbjct: 578 EQNKDEEEAPESYMNRVV----GAADSYNLEEMEAPSTL-TCNLRPYQKQALYWMSESEK 632
Query: 210 ------------------------------------------TLYENGLNGILADEMGLG 227
T + GILAD MGLG
Sbjct: 633 GIDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGEATIQFPTATQMARGGILADAMGLG 692
Query: 228 KTIQSIALLAF------------------------------IYEMDTKGPFLIAAPLSTV 257
KT+ +IAL+ + + KG LI P++ +
Sbjct: 693 KTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGGTLIICPMALL 752
Query: 258 ENWMNEFARFA-PD-IPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIEL 315
W +E + PD + VL YY + A+ V++T+Y ++ +
Sbjct: 753 SQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIAS--------HDVVLTTYGVLTSAYKQ 804
Query: 316 ILS------YQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSL 369
++ W +++DE H +K+ + + +++ R LTGTPLQN L +L+SL
Sbjct: 805 DMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSL 864
Query: 370 LNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRR 429
L F+ + ++ ++K N + KL K IL+P +LRR
Sbjct: 865 LCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIK---------------AILRPLMLRR 909
Query: 430 L-----KKNVLAGSLPPKREYIITCPVTPLQKKYYKQALK 464
K+ L LPP +I C + ++ +Y K
Sbjct: 910 TKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFK 949
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 93.6 bits (231), Expect = 1e-18
Identities = 77/257 (29%), Positives = 115/257 (43%), Gaps = 33/257 (12%)
Query: 571 SGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLI-------------------------- 604
S KL +L +++ + + K+L+FSQ + L LI
Sbjct: 946 SNKLILLVEIIKKCEEIGDKLLVFSQSLESLTLIKRMLEYMAGTGQWFADGHEALNAEGE 1005
Query: 605 EDWSELNNFISCRIDGSMQNNSRKEQIEEFSKK-GSKANLFLLSTRAAGLGINLTAADSV 663
E WS L IDGS+Q+ R F+ +A L L+STRA LG N+ AA+ V
Sbjct: 1006 ETWSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRV 1065
Query: 664 IIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQM 723
IIFD+ WNP D Q++ R +R GQTKPV +YR T+E I R V K V+
Sbjct: 1066 IIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 1125
Query: 724 GKFNTLKKLAFNEQTFL-KMNGSSLATTTKQSANKELVKELSQLLISNE---TNQGQADT 779
+ + N+ T L + S+ + S + L+ ++ N+ + + DT
Sbjct: 1126 AQIQ--RHYLGNDLTELYQFTPSTFDPDVEISCAPPKDRLLADVIHKNQHAVVDYIEHDT 1183
Query: 780 SKIENSDDILEESEMKE 796
D+ L E EMK+
Sbjct: 1184 LFANVEDEKLTEQEMKD 1200
Score = 87.0 bits (214), Expect = 1e-16
Identities = 108/459 (23%), Positives = 190/459 (40%), Gaps = 79/459 (17%)
Query: 92 KASSEDAAKNEDSDENFENDSHTISLKIKKLQEFVQQSQVYSSIIADTLLER----AGQN 147
K S + A K E S+ ++ +I++ K ++ + + I+ + L++ A +
Sbjct: 335 KVSKKKAKKQESSESGSDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSKLQKETIDAERA 394
Query: 148 DEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTS----LSSSFMQPSFLKNCQ------- 196
+++ + +K++KE +++ E E TS L S + P +
Sbjct: 395 EKERRKRLEKKQKEFNGIVLEEGEDLTEMLTGTSSQRKLKSVVLDPDSSTVDEESKKPVE 454
Query: 197 --------LKPYQKEGLNWLIT--------LYENGLNGILADEMGLGKTIQSIALLAFIY 240
LKP+Q G+ ++ L G GILA MGLGKT+Q I L +
Sbjct: 455 VHNSLVRILKPHQAHGIQFMYDCAFESLDRLDTEGSGGILAHCMGLGKTLQVITFLHTVL 514
Query: 241 EMDTKGP----FLIAAPLSTVENWMNEFARFAPD---------IPVLKYYNSEGQAARHA 287
+ G L+ P + + NW EF ++ D + L Y + + R A
Sbjct: 515 MHEKIGEKCKRVLVVVPKNVIINWFKEFQKWLVDNDEELDTIDVNELDSYKTI-EDRRRA 573
Query: 288 MMGKFFKNNKGEGVIITSYEIII-----------------RDIELILSYQWKFL------ 324
+ K + ++K V+I Y++ R +E K+L
Sbjct: 574 L--KAWHSSKTPSVMIIGYDLFRILTVEDDPKKKKPKNRNRRLEKAKEDFRKYLQNPGPD 631
Query: 325 --IVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIF-SDF 381
+ DE H+LKN + L + + +I T R+ LTGTPLQNNL E ++NF+ P + +
Sbjct: 632 MVVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLMEYHCMVNFVKPGLLGTKT 691
Query: 382 EIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFLLRRLKKNVLAGSLPP 441
E N++ + + K + K L+ LK + R+ VL ++PP
Sbjct: 692 EFANRFVNI----INRGRTKDASPLEVSFMKRRCHVLYDHLKKCVDRK-DYRVLTEAIPP 746
Query: 442 KREYIITCPVTPLQKKYYKQALKGNLKQT-IQKQAIKDF 479
K+EY+I T Q Y L + + + K+ + D+
Sbjct: 747 KQEYVINVRQTERQCALYNAFLNDIVGDSGLSKRLLPDY 785
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 92.8 bits (229), Expect = 2e-18
Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 571 SGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQ 630
S K+ ++V E+++KK KV+I SQ+ S+L+L+E + I G + R+E+
Sbjct: 839 SCKMAKTLEVVREILEKKEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQER 898
Query: 631 IEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKP 690
++ F+++ A + LLS A G+G+NL + +I+ D WNP ++ QA DR +R+GQ K
Sbjct: 899 VDSFNQEKGGAQVMLLSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKE 958
Query: 691 VIVYRL----YC----DNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNE-QTFLK 741
V ++RL +C TIE +M K L V++ L KL + +
Sbjct: 959 VFIHRLNISKFCRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKLNKLTTADIRMLFG 1018
Query: 742 MNGSSLA 748
++GSS A
Sbjct: 1019 LDGSSNA 1025
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 91.7 bits (226), Expect = 4e-18
Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
K ++F+Q+ MLDL+E + + R DG M +R +++F+ ++ ++S +
Sbjct: 1074 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPD-VSVMIMSLK 1132
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
AA LG+N+ AA VI+ D WNP + QA+DRAHRIGQT+PV V R +T+E+ I+
Sbjct: 1133 AASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILAL 1192
Query: 710 AVNKRKL 716
KRK+
Sbjct: 1193 QQKKRKM 1199
Score = 66.2 bits (160), Expect = 2e-10
Identities = 74/339 (21%), Positives = 129/339 (37%), Gaps = 83/339 (24%)
Query: 183 SSSFMQPSFLKNCQLKPYQKEGLNWLITLYENG---LNGILADEMGLGKTIQSIALLA-- 237
SS P + L +Q+ L+W+ +G GILAD+ GLGKT+ +IAL+
Sbjct: 528 SSEASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTE 587
Query: 238 -----FIYEMDTKGP--------------------------------FLIAAPLSTVENW 260
E D+K LI P S + W
Sbjct: 588 RSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTLIVCPTSLMRQW 647
Query: 261 MNEFAR---FAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIEL-- 315
+E + + VL Y+ H + K+ V+IT+Y ++ + +
Sbjct: 648 ADELRKKVTLEAHLSVLVYHGCSRTKDPHEL-AKY-------DVVITTYSLVSKRKHMDC 699
Query: 316 ---------ILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGEL 366
+ W +++DE +KN + ++ R L+GTP+QN++ +L
Sbjct: 700 EPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADL 759
Query: 367 WSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKPFL 426
+S F+ + +S ++ F E+ ++ + + L ILK +
Sbjct: 760 YSYFRFLKYDPYSSYQTF----------CETIKNPISSYPGEGYK-----TLQAILKKVM 804
Query: 427 LRRLKKNVLAG----SLPPKREYIITCPVTPLQKKYYKQ 461
LRR K +L G SLPPK + T ++ +Y +
Sbjct: 805 LRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSK 843
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 91.7 bits (226), Expect = 4e-18
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 556 LLEPTDLTLENLLKTSGKLQ-VLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFI 614
LL P + + ++ S KL+ V+ KL L K+++ SQ+VS L ++ + ++
Sbjct: 775 LLNPQNPIFQ-FIRPSAKLKMVIDKLEELLTGTNDKIIVTSQWVSYLAIVRKRLQDLSWE 833
Query: 615 SCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQV 674
+ +G + R+ + +F+ K + LLS A G+G+NL A+ ++I D WNPQ+
Sbjct: 834 TLDFNGQLTAKEREIVLRDFNANNEK-RVLLLSLTAGGVGLNLNVANHMLIVDLHWNPQL 892
Query: 675 DLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVI 721
+ QA DR +R GQTKP +YR C +T+E I + K ++ K+V+
Sbjct: 893 ERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL 939
Score = 57.0 bits (136), Expect = 1e-07
Identities = 50/202 (24%), Positives = 96/202 (46%), Gaps = 38/202 (18%)
Query: 249 LIAAPLSTVENWMNEFARFAPD--IPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSY 306
L+ P+S + W +E A I VL ++ RH + + F++ ++ITSY
Sbjct: 393 LVVCPMSVMCQWAHEVASKVAQNAIRVLTFHGPN----RHEIGIEAFRSYD---LVITSY 445
Query: 307 EIIIRDIEL------ILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQ 360
+++ +++ + + W +I+DE H ++N + ++ LTGTP+Q
Sbjct: 446 NLVVNELKRYGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQ 505
Query: 361 NNLGELWSLLNFI-LPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLISNLH 419
N ++++LL F+ +PN F DL ++ K +N+ + + L+
Sbjct: 506 NRGVDVFALLRFVNVPN-------------FQDL------QQWKKNLNESMLGH--RRLN 544
Query: 420 TILKPFLLRRLKKNVLA-GSLP 440
I+KP +LRR K+ + A G +P
Sbjct: 545 FIIKPLMLRRTKQKLQASGDMP 566
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 90.1 bits (222), Expect = 1e-17
Identities = 47/127 (37%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
K ++FSQ+ ML+L+E ++ R+DG+M +R + +++F+ + + ++S +
Sbjct: 1132 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTL-PEVTVMIMSLK 1190
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
AA LG+N+ AA V++ D WNP + QA+DRAHRIGQT+PV V R +T+E+ I+
Sbjct: 1191 AASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILAL 1250
Query: 710 AVNKRKL 716
KR +
Sbjct: 1251 QQKKRMM 1257
Score = 53.1 bits (126), Expect = 2e-06
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 25/148 (16%)
Query: 321 WKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSD 380
W +++DE +KN ++ R + R L+GTP+QN++ +L+S F+ + +S
Sbjct: 794 WFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSS 853
Query: 381 FEIFNKWFDFSDLNLESSSEKLTKIINDELEKNLI---SNLHTILKPFLLRRLKKNVLAG 437
+ +F I + + +N + L ILK +LRR K ++L G
Sbjct: 854 YVLF------------------CSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDG 895
Query: 438 ----SLPPKREYIITCPVTPLQKKYYKQ 461
SLPPK + T ++ +Y +
Sbjct: 896 KPIISLPPKSIELRKVDFTVEERDFYSK 923
>ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 556
Score = 82.4 bits (202), Expect = 3e-15
Identities = 74/267 (27%), Positives = 124/267 (45%), Gaps = 56/267 (20%)
Query: 197 LKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLAFIYEMDTKGPFLIAAPLST 256
L P+Q+EG+ + G I+AD+MGLGKTIQ++A +A+ Y + P +I AP S
Sbjct: 124 LLPFQREGVEHALN---RGGRMIVADDMGLGKTIQALA-VAYYYR--AEWPLVIIAPASL 177
Query: 257 VENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELI 316
+E+W + RF E R K + G+ + + SYE+ +
Sbjct: 178 LEDWADACRRF---------LGMEAMVMRR-------KEDFGQEIGVVSYEVASSHAN-V 220
Query: 317 LSYQWKFLIVDEGHRLKNINCKLIRELKRI--NTSNRLLLTGTPLQNNLGELWSLLNFIL 374
L+ +I DE H LK++ K + + + S LLL+GTP + EL+ +++ +
Sbjct: 221 LACGAGVVIADECHYLKSLQTKRTKAIVPLLQKVSRALLLSGTPAVSRPLELYPIISAVD 280
Query: 375 PNIFSDFEIF----------NKWFDFSDLNLESSSEKLTKIINDELEKNLISNLHTILKP 424
IF F + +W+D+ S++E+ LH +L+
Sbjct: 281 RTIFPRFAEYGARYCNGRKVGQWYDYKGC---SNAEE----------------LHYVLRK 321
Query: 425 FLLRRLKKNVLAGSLPPK--REYIITC 449
FL+ R K+ + G LPPK R+ ++ C
Sbjct: 322 FLMIRRTKDEVLGQLPPKFRRQVVLEC 348
Score = 77.0 bits (188), Expect = 1e-13
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 5/166 (3%)
Query: 573 KLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIE 632
K+ +++ + +++K K ++F M++ +E + N RIDGS+ + SR ++
Sbjct: 379 KVDPVKQYLATMVEKGMKFVVFCHHTEMMESLEGFFAERNVPMIRIDGSVPSTSRHLLVK 438
Query: 633 EFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVI 692
+F ++ + + LLS A G+ LTA +V+ + WNP V LQA DR HRIGQ V
Sbjct: 439 KF-QENEEVMVALLSITACSTGLTLTAGRAVVFAELYWNPGVLLQAEDRIHRIGQKSSVD 497
Query: 693 VYRLYCDNTIENVIMTRAVNK-RKLEKLVIQMGKFNTLKKLAFNEQ 737
+ L TI+ + + ++K LE L + N LK + + Q
Sbjct: 498 IIYLVAKGTIDEYVWPKLLSKLNVLESLGVGS---NQLKNVGVSSQ 540
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 79.7 bits (195), Expect = 2e-14
Identities = 87/320 (27%), Positives = 138/320 (42%), Gaps = 45/320 (14%)
Query: 178 PSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLA 237
P LS + P + N L P+Q+ G+N+ I G +LAD+MGLGKTIQ+I + A
Sbjct: 421 PEADLSE--VDPKLVSN--LMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICIAA 473
Query: 238 FIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNK 297
F + + P L+ P S W F R+ P + + G K+
Sbjct: 474 FYRK---EWPLLVVVPSSVRFTWEQAFLRWLPSL--------SPDCINVVVTG---KDRL 519
Query: 298 GEGVI-ITSYEIIIRDIELILSYQWKFLIVDEGHRLKN---INCKLIRELKRINTSNRLL 353
G+I I S++++ + +E L +K +I+DE H LKN C+ + ++ +L
Sbjct: 520 TAGLINIVSFDLLSK-LEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKV-AKRVIL 577
Query: 354 LTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELEKN 413
L+GTP + EL++ + + P F F F L K D +
Sbjct: 578 LSGTPAMSRPAELYTQIIAVKPTFFPQFHAF---------GLRYCDAKRMPWGWDYSGSS 628
Query: 414 LISNLHTIL-KPFLLRRLKKNVLAGSLPPKREYIITCP-------VTPLQKKYYKQALKG 465
+ L +L + +LRRLK +VL+ +R+ ++ P L + K
Sbjct: 629 NLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKD 688
Query: 466 NLKQTIQKQAIKDFFTLNAE 485
KQ QK A+ FF AE
Sbjct: 689 KTKQQ-QKDALILFFNRTAE 707
Score = 71.6 bits (174), Expect = 5e-12
Identities = 67/232 (28%), Positives = 107/232 (45%), Gaps = 26/232 (11%)
Query: 576 VLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFS 635
V++ ++ L + K L+F+ +LD I E + RIDGS + R++ ++F
Sbjct: 713 VIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQ 772
Query: 636 KKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYR 695
A + +LS AA +G+ ++AD V+ + WNP V +QA DR HRIGQT V ++
Sbjct: 773 LSERHA-VAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHY 831
Query: 696 LYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNGSS--LATTTKQ 753
L T ++ + K K+ L + +E F +M S+ L KQ
Sbjct: 832 LVAKGTADDYLWPLIQEKIKV------------LAEAGLSETNFSEMTESTDYLYKDPKQ 879
Query: 754 SA-----NKELVKELS--QLLISNET-NQGQA---DTSKIENSDDILEESEM 794
K KE S +LL + E+ + G A S +N D L+ES +
Sbjct: 880 QKIYDLFQKSFEKEGSDMELLEAAESFDPGSASGTSGSSSQNMGDTLDESSL 931
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 79.0 bits (193), Expect = 3e-14
Identities = 48/134 (35%), Positives = 74/134 (54%), Gaps = 9/134 (6%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFIS------CRIDGSMQNNSRKEQIEEFSKKG-SKAN 642
+V+IFSQF + LD++E EL + S + DG + R + +F+ K S+
Sbjct: 1014 QVVIFSQFSTYLDILE--KELTHTFSKDVAKIYKFDGRLSLKERTSVLADFAVKDYSRQK 1071
Query: 643 LFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTI 702
+ LLS +A G+G+NLT A + D W+P ++ QA+DR HRIGQT V V R ++I
Sbjct: 1072 ILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSI 1131
Query: 703 ENVIMTRAVNKRKL 716
E ++ KR +
Sbjct: 1132 EEKMLRIQEKKRTI 1145
Score = 74.7 bits (182), Expect = 5e-13
Identities = 77/296 (26%), Positives = 119/296 (40%), Gaps = 71/296 (23%)
Query: 218 GILADEMGLGKTIQSIALLA-------------FIYE------------MDTKGPF---- 248
GIL+DEMGLGKT+ + +L+ F E D K P+
Sbjct: 528 GILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVSDNLPSTWQDNKKPYASKT 587
Query: 249 -LIAAPLSTVENWMNEF--ARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITS 305
LI P+S + W NEF A +PD+ YY + + + K V++T+
Sbjct: 588 TLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLKTLLT----KTKTPPTVVLTT 643
Query: 306 YEIIIR-------------DIEL---ILSYQWKFLIVDEGHRLKNINCKLIRELKRINTS 349
Y I+ D+ + + S + +I+DEGH ++N + + +
Sbjct: 644 YGIVQNEWTKHSKGRMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGK 703
Query: 350 NRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDE 409
+ +LTGTP+ N L +L+SL+ F+ + N W F ES +
Sbjct: 704 CKWVLTGTPIINRLDDLYSLVKFL---ELDPWRQINYWKTFVSTPFESKN---------- 750
Query: 410 LEKNLISNLHTILKPFLLRRLKK-----NVLAGSLPPKREYIITCPVTPLQKKYYK 460
K ++ IL+P LLRR K+ LPPK I P + Q YK
Sbjct: 751 -YKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYK 805
>SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1375
Score = 75.1 bits (183), Expect = 4e-13
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
KV++FSQ++ +LD++ E N + R DG +N K EE S + + L R
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGKSKNTCLKRFKEERSLQ-----VLTLHAR 1260
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
+ G+ LT A V + + N +++QA+ R HRIGQT+P VY ++T+E I+
Sbjct: 1261 SQSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEGHILNL 1320
Query: 710 AVNK-RKLEKL 719
++ K +L+KL
Sbjct: 1321 SLTKHEQLDKL 1331
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 73.6 bits (179), Expect = 1e-12
Identities = 43/105 (40%), Positives = 61/105 (57%), Gaps = 4/105 (3%)
Query: 615 SCRIDGSMQNNSRKEQIEEFSKKGSKANL---FLLSTRAAGLGINLTAADSVIIFDSDWN 671
SC D S+ +R+ + +K S + L L+S +A LG+N+ AA VI+ D WN
Sbjct: 479 SCDRDSSVACRARQSR-HSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWN 537
Query: 672 PQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKL 716
P + QA+DRAHRIGQT+ V V R+ NT+E I+T KR +
Sbjct: 538 PTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNI 582
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 73.2 bits (178), Expect = 2e-12
Identities = 75/279 (26%), Positives = 130/279 (45%), Gaps = 33/279 (11%)
Query: 173 KDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQS 232
K + +PS ++ M PS ++ +L PYQKEG+ I E +LADEMGLGK++Q+
Sbjct: 179 KPKAAPSDL--NTVMDPSLIE--RLFPYQKEGV---IFALERDGRILLADEMGLGKSVQA 231
Query: 233 IALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKF 292
+ + + Y+ D P LI P S W + F P I + +
Sbjct: 232 LTIARY-YKAD--WPLLIVCPASVKGAWKKQLNTFFPIIHRIFIVDKSSDPLPDVC---- 284
Query: 293 FKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKN---INCKLIRELKRINTS 349
V I SYE ++ +++ +++ +I DE H LK+ K+ +L ++
Sbjct: 285 ----TSNTVAIMSYEQMVLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSKV-AL 339
Query: 350 NRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFN-KWFDFSDLNLESSSEKLTKIIND 408
+ +LL+GTP + EL++ + I +F++F F ++ D ++ T ++
Sbjct: 340 HVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAIRYCDGKQGRFCFEAKGCTN--SE 397
Query: 409 ELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYII 447
EL + K ++RRLK +VL LP KR ++
Sbjct: 398 ELAA-------IMFKRLMIRRLKADVLK-DLPEKRREVV 428
Score = 68.6 bits (166), Expect = 4e-11
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
KVLIF+ +LD I+ S RIDG ++ R + F + + +LS
Sbjct: 494 KVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCDSF-QTDDNIRVAVLSIT 552
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
AAG+GI LTAA V+ + +NP +QA DRAHR+GQ V V L T ++V+
Sbjct: 553 AAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNM 612
Query: 710 AVNKRK-LEKLVIQMGKFNTLKK--LAFNE 736
K L ++ + F T K L FN+
Sbjct: 613 VQQKLDVLGQVSLSSDTFRTADKMHLRFND 642
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 73.2 bits (178), Expect = 2e-12
Identities = 75/279 (26%), Positives = 130/279 (45%), Gaps = 33/279 (11%)
Query: 173 KDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLITLYENGLNGILADEMGLGKTIQS 232
K + +PS ++ M PS ++ +L PYQKEG+ I E +LADEMGLGK++Q+
Sbjct: 177 KPKAAPSDL--NTVMDPSLIE--RLFPYQKEGV---IFALERDGRILLADEMGLGKSVQA 229
Query: 233 IALLAFIYEMDTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKF 292
+ + + Y+ D P LI P S W + F P I + +
Sbjct: 230 LTIARY-YKAD--WPLLIVCPASVKGAWKKQLNTFFPIIHRIFIVDKSSDPLPDVC---- 282
Query: 293 FKNNKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKN---INCKLIRELKRINTS 349
V I SYE ++ +++ +++ +I DE H LK+ K+ +L ++
Sbjct: 283 ----TSNTVAIMSYEQMVLKHDILKKEKYRTIIFDESHMLKDGKARRTKVATDLSKV-AL 337
Query: 350 NRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFN-KWFDFSDLNLESSSEKLTKIIND 408
+ +LL+GTP + EL++ + I +F++F F ++ D ++ T ++
Sbjct: 338 HVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAIRYCDGKQGRFCFEAKGCTN--SE 395
Query: 409 ELEKNLISNLHTILKPFLLRRLKKNVLAGSLPPKREYII 447
EL + K ++RRLK +VL LP KR ++
Sbjct: 396 ELAA-------IMFKRLMIRRLKADVLK-DLPEKRREVV 426
Score = 68.6 bits (166), Expect = 4e-11
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
KVLIF+ +LD I+ S RIDG ++ R + F + + +LS
Sbjct: 492 KVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCDSF-QTDDNIRVAVLSIT 550
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTR 709
AAG+GI LTAA V+ + +NP +QA DRAHR+GQ V V L T ++V+
Sbjct: 551 AAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNM 610
Query: 710 AVNKRK-LEKLVIQMGKFNTLKK--LAFNE 736
K L ++ + F T K L FN+
Sbjct: 611 VQQKLDVLGQVSLSSDTFRTADKMHLRFND 640
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 73.2 bits (178), Expect = 2e-12
Identities = 39/115 (33%), Positives = 63/115 (53%)
Query: 618 IDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQ 677
I G + R+E+++ F+++ A LLS A G+G+NL + +I+ D WNP ++ Q
Sbjct: 385 ITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQ 444
Query: 678 AMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKL 732
A DR +R+GQ K V ++RL TIE +M+ K L V++ + KL
Sbjct: 445 ACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLEGSATRGMNKL 499
>Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 293
Score = 68.6 bits (166), Expect = 4e-11
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTR 649
K L+F+ +SML + N RIDGS+ ++ R + +F +K + +LS +
Sbjct: 88 KFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQF-QKDPDTRVAILSIQ 146
Query: 650 AAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVI 706
AAG G+ TAA V+ + W+P QA DRAHRIGQ V ++ L + T++ ++
Sbjct: 147 AAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLM 203
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 66.6 bits (161), Expect = 1e-10
Identities = 50/181 (27%), Positives = 82/181 (44%), Gaps = 19/181 (10%)
Query: 590 KVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKAN------- 642
KVL+FS + +LD++E N+ R+ G ++ + + + K+ K N
Sbjct: 1435 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1494
Query: 643 ---LFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCD 699
+ LL + G+NL A VI+ + NP + QA+ R HRIGQ KP +V+R
Sbjct: 1495 SIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVS 1554
Query: 700 NTIENVIMTRAVNKRKLEKLVIQMGKFNTLKKLAFNEQTFLKMNG--SSLATTTKQSANK 757
T+E I NK + F++ + +Q FL + S A+ T ++A
Sbjct: 1555 GTVEESIYKLNRNKN------TNLSSFSS-RNTKNQDQQFLTLKDLESLFASPTAETAEM 1607
Query: 758 E 758
E
Sbjct: 1608 E 1608
>SPAC11E3.01c [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 193
Score = 63.9 bits (154), Expect = 9e-10
Identities = 38/127 (29%), Positives = 67/127 (51%), Gaps = 15/127 (11%)
Query: 678 AMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLVIQMGKFNT--------L 729
A DR+HRIGQT+ V +YRL + T+E+ ++ RA KR L+K+VIQ G+F T L
Sbjct: 1 AQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVL 60
Query: 730 KKLAFNEQTFLKMNGSSLATTTKQSANKELVKELSQLLISNETNQGQADTSKIENSDDIL 789
++++ K+ S + +TK N E+ ++ ++ +++ + L
Sbjct: 61 DLFDLDDESLKKVKADSDSGSTKNEENWEVA-------LAAAEDEEDVQAAQVARKESAL 113
Query: 790 EESEMKE 796
E++E E
Sbjct: 114 EQTEFSE 120
>SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 104
Score = 63.5 bits (153), Expect = 1e-09
Identities = 29/62 (46%), Positives = 42/62 (66%)
Query: 642 NLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNT 701
N+ ++S +A G+G+NLT A+ V I D W+ V+ QA+DR HR+GQ KPV V R +T
Sbjct: 5 NVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDT 64
Query: 702 IE 703
+E
Sbjct: 65 VE 66
>CE23294 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 540
Score = 63.2 bits (152), Expect = 2e-09
Identities = 69/297 (23%), Positives = 125/297 (41%), Gaps = 51/297 (17%)
Query: 145 GQNDEDETPQKKKQKKEAIQTLMKRDEPKDEGSPSTSLSSSFMQPSFLKNCQLKPYQKEG 204
G+N DE + + K+ I + EP + +P+ F+ + +L P+Q+
Sbjct: 7 GENLNDEFDKCTLEDKKDI-----KKEPCQDATPN----------GFVADFRLMPHQEAA 51
Query: 205 LNWLITLY-ENGLNGILADEMGLGKTIQSIALL--------AFIYEMDTKGPFLIAAPLS 255
+W+I + GIL G GKT IAL+ + + + K P LI P
Sbjct: 52 RDWMIDREAQEPSGGILGLAHGQGKTAIVIALILDQKIKCASNDKKFEQKSPTLIIVPKR 111
Query: 256 TVENWMNEFARFAPD--IPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDI 313
+ W +EF + + V YY+ E AR + + K + V+ T + +++
Sbjct: 112 IIYQWYDEFKDRLEENALSVYLYYDDEFSEARKNISASELQ--KYDVVLTTYRNVPVKEK 169
Query: 314 E---------LILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLTGTPLQNNLG 364
+ ++ + +W +++DE H +++ N K + + + NR +T P QN+
Sbjct: 170 DETGEKVSKQVLQNIKWTRIVLDEAHNIRDSNTKKSTAIATLASKNRWCVTAAPFQNS-- 227
Query: 365 ELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKLTKIINDELE----KNLISN 417
W + N IL + NK F + E + E L K+ +E NL+ N
Sbjct: 228 -EWDICNLIL-------FLGNKPFGENVKGPEKTPENLKKLKESTMELFRGNNLVFN 276
>Hs22048060 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 122
Score = 58.2 bits (139), Expect = 5e-08
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 219 ILADEMGLGKTIQSIALLAFIYEM-DTKGPFLIAAPLSTVENWMNEFARFAPDIPVLKY 276
ILADEMGLGKTIQ I+ L++++ + GPFLI PLST+ +W EF + + V+ Y
Sbjct: 33 ILADEMGLGKTIQVISFLSYLFNVHQLYGPFLIVVPLSTMTSWQREFEAWDSKMNVVVY 91
>Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1669
Score = 55.8 bits (133), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (49%), Gaps = 6/108 (5%)
Query: 602 DLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFS------KKGSKANLFLLSTRAAGLGI 655
D+ W ++ + IS + + ++ +++ F K+ + N+ LL G+
Sbjct: 1542 DIPVKWQDVLDIISKALTDNNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGL 1601
Query: 656 NLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIE 703
+ A V++ + NP +LQA+ R HRIGQTKP IV+R TIE
Sbjct: 1602 TIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1649
>7295362 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1270
Score = 55.5 bits (132), Expect = 3e-07
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 569 KTSGKLQVLQKLVPELIKKKHKVLIFSQFVSMLDLIEDWSELNNFISCRIDGSMQNNSRK 628
K S ++++ K+ E ++ K+++FSQ+ ++L I LN +N
Sbjct: 1106 KISSVVELVLKIKGE--NEQEKIIVFSQWQAILIEIARALSLNGI-------QFRNKCTN 1156
Query: 629 EQIEEFSKKGSKANLFLLSTRAAGLGINLTAADSVIIFDSDWNPQVDLQAMDRAHRIGQT 688
+ ++F S L+ G+NL A V + + NP + QA+ R HR GQ
Sbjct: 1157 KDFDDFKNPLSNVTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQK 1216
Query: 689 KPVIVYRLYCDNTIENVIMT 708
+P V+R + TIE I++
Sbjct: 1217 RPTKVHRFIVNETIEENILS 1236
>At2g25020 [L] KOG0390 DNA repair protein SNF2 family
Length = 476
Score = 54.7 bits (130), Expect = 6e-07
Identities = 55/256 (21%), Positives = 110/256 (42%), Gaps = 20/256 (7%)
Query: 178 PSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLI-TLYENGLNGILADEMGLGKTIQSIALL 236
P S + + P L +KP+ E N+L L NG + + L + ++ ++
Sbjct: 167 PKDGFSGTGIFPHPLHKMIMKPHHFEIFNFLCKNLVVENSNGCIIAQTPLSE--KTFLMI 224
Query: 237 AFIYEMDTKGPF---LIAAPLSTVENWMNEFARF-APDIPVLKYYNSEGQAARHAM--MG 290
+FIY K P L P + W +F D+ +L +Y+++ + +
Sbjct: 225 SFIYGYLEKHPNSKPLFVLPKWVLNFWKTKFGELKVNDLVLLDFYSAKASTRSQQLEVLN 284
Query: 291 KFFKNNKGEGVIITSYEIIIRDI----------ELILSYQWKFLIVDEGHRLKNINCKLI 340
++ K + + II D +++L+ ++ D G +N +
Sbjct: 285 RWIKTRSIIFLGAKQFSNIISDNSGAEASDSCRDILLNIP-SVVVFDRGTDPRNEMMSFL 343
Query: 341 RELKRINTSNRLLLTGTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSE 400
+ + RI T +++LLTG+ QNN+ E++++L+ + P I F ++ + S
Sbjct: 344 KVVARIKTPHKVLLTGSLYQNNIKEVFNILDVVFPEFLKHNRIGKNIRKFLNVEADGPST 403
Query: 401 KLTKIINDELEKNLIS 416
L + D+LE+ L+S
Sbjct: 404 NLKMPLFDKLEEALLS 419
>At3g31900 [L] KOG0390 DNA repair protein SNF2 family
Length = 393
Score = 50.8 bits (120), Expect = 8e-06
Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 29/227 (12%)
Query: 178 PSTSLSSSFMQPSFLKNCQLKPYQKEGLNWLI-TLYENGLNGILADEMGLGKTIQSIALL 236
P S S + + P L +KP+ E LN+L L NG + D+ L + ++ ++
Sbjct: 194 PKDSFSGTGIFPHPLHKMIMKPHHFEILNFLCKNLVVENSNGCIIDQTPLSE--KTFLMI 251
Query: 237 AFIYEMDTKGPFLIAAPLSTVENWMNEFARF-APDIPVLKYYNSEGQAARHAMMGKFFKN 295
+FIY VE +F D+ +L +Y+++ A + + +
Sbjct: 252 SFIYV--------------GVERLEKKFGELKVNDLVLLDFYSTKASAKQFS---NIVSD 294
Query: 296 NKGEGVIITSYEIIIRDIELILSYQWKFLIVDEGHRLKNINCKLIRELKRINTSNRLLLT 355
N G + +I++ + ++ + G +N ++ + RI T +++LLT
Sbjct: 295 NSGAEASDSCRDILLNILSVV--------VFGRGTDPRNEMMSFLKVVSRIKTPHKVLLT 346
Query: 356 GTPLQNNLGELWSLLNFILPNIFSDFEIFNKWFDFSDLNLESSSEKL 402
G+ QNN+ E++++L+ P +I + F ++ + S L
Sbjct: 347 GSLYQNNIKEVFNILDVAFPEFLKHNQIGKNFRKFLNVEADGPSTNL 393
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,304,398
Number of Sequences: 60738
Number of extensions: 2005254
Number of successful extensions: 9456
Number of sequences better than 1.0e-05: 160
Number of HSP's better than 0.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8460
Number of HSP's gapped (non-prelim): 454
length of query: 826
length of database: 30,389,216
effective HSP length: 115
effective length of query: 711
effective length of database: 23,404,346
effective search space: 16640490006
effective search space used: 16640490006
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)