ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1139 suspect: LH L KOG3662 Replication, recombination and repair Cell division control protein/predicted DNA repair exonuclease
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV1139 400030 398657 -458 
         (458 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YIL039w [L] KOG3662 Cell division control protein/predicted DNA ...   578   e-165
SPAC23A1.02c [L] KOG3662 Cell division control protein/predicted...    98   2e-20

>YIL039w [L] KOG3662 Cell division control protein/predicted DNA repair
           exonuclease
          Length = 473

 Score =  578 bits (1490), Expect = e-165
 Identities = 271/470 (57%), Positives = 340/470 (71%), Gaps = 20/470 (4%)

Query: 6   AIKKFTLLLTAIALIFNVYIYTYPSLNPKQCSWRCFEQDAKQGQSNLIF-----SYFNDI 60
           A+KKF    T + ++ N+YIYTYPS +P+QCSW C  ++A   Q +L F     +YF+D+
Sbjct: 5   AVKKFAYFATFLTIVANIYIYTYPSFHPEQCSWNCSNKNAPL-QKDLTFVDKVKNYFSDV 63

Query: 61  LH----SHDDK-NPNDVKLMALGDPQIKGIWANTPYISRLDTFGNDYYLGHIFRTMYNRL 115
                 SH    N  D+ ++A GDPQIKGIW  TPY+SRLDT+GNDYYLGHI+  M  RL
Sbjct: 64  REQWHGSHASAGNDEDIHILAFGDPQIKGIWPKTPYVSRLDTYGNDYYLGHIYDMMQQRL 123

Query: 116 KPSHVVVMGDLFSSQWIGDSEFFNRTVRYTKRLFNRDVKWLYDLQEEHHGDDGTYKVNWV 175
           KP  V VMGDLFSSQWIGDSEF NRT RY  R+F RD   + ++++++  + G YK NW 
Sbjct: 124 KPQVVTVMGDLFSSQWIGDSEFHNRTKRYISRIFKRDPTSIENIKQQNLDEKGQYKANWP 183

Query: 176 EWADNLNKI-------RTGDRPMNFSFGYQDIYNWT-SAENYLFINVSGNHDIGYSGDAT 227
           EW D  N+I          ++ ++F FGY++I++W    E++L IN++GNHD+GYSGDAT
Sbjct: 184 EWGDRFNEILDNVKENEADNQELSFGFGYENIHSWNPDLEDFLIINITGNHDVGYSGDAT 243

Query: 228 YQHMARYRELLGKDNYWIEYNAGTDNAWRIIVLNDLLLEGPALQPELLETNWEFLYQLFE 287
           YQHM R+ +L GKDNYWIEY   T + WRI+VLNDLLLEGPALQPE +E  W FL QL E
Sbjct: 244 YQHMTRFHDLFGKDNYWIEYETNTTHPWRIVVLNDLLLEGPALQPEFVEATWIFLNQLNE 303

Query: 288 RKFEGSTVLLTHIPFYKPSGLCYDGPEFRYYPEDYQREPYKSKLLRSQNHLSAEASNRVL 347
           RKF GSTVLLTH+PFYK  GLC DGP+ RYYP+ +  E YKS LLRSQNHLS   SN+VL
Sbjct: 304 RKFNGSTVLLTHVPFYKREGLCVDGPDTRYYPDAHAPESYKSGLLRSQNHLSESVSNQVL 363

Query: 348 NLIFDAEKPGIILTGHDHEGCETVYNKDDKGNWTASKTTDPKNLNIKEITVRSMMGEYHG 407
           N+IF+  KPGIILTGHDHEGCETVYNK     W A+K  +  ++ +KEITV+SMMGE++G
Sbjct: 364 NMIFENGKPGIILTGHDHEGCETVYNKKSTSTWEATKNIE-SDVFVKEITVKSMMGEFNG 422

Query: 408 NTGLVTGHFNEATRQWEWSFNLCPFSIQHIWWFTKVVTIITGFLWSSAFF 457
           NTGLVTGHFN  +  WEW+F+LCPF+IQH+WWF KV  ++T F WSS  F
Sbjct: 423 NTGLVTGHFNTDSMTWEWTFSLCPFAIQHVWWFAKVSLLVTIFTWSSLLF 472


>SPAC23A1.02c [L] KOG3662 Cell division control protein/predicted DNA repair
           exonuclease
          Length = 430

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 99/373 (26%)

Query: 67  KNPNDVKLMALGDPQIKG---IWANTPYISRLDTFGNDYYLGHIFRTMYNRLKPSHVVVM 123
           ++ N   +M + DPQI+G   I AN  +   LD +GND +L H+        +P  ++++
Sbjct: 46  EDENSFVIMGVADPQIEGNHKIEANGFFKGTLDLWGNDLFLRHLVHMNQFWGQPDAMILL 105

Query: 124 GDLFSSQWIGDSEFFNRTVRYTKRLFNRDVKWLYDLQEEHHGDDGTYKVNWVEWADNLNK 183
           GDL S Q + + EF  R  R  K                            +  A N  +
Sbjct: 106 GDLVSFQHLDNEEFNKRAKRLKK----------------------------ITGAKNFWQ 137

Query: 184 IRTGDRPMNFSFGYQDIYNWTSAENYLFINVSGNHDIGYSGDATYQHMARYRELLGKDNY 243
           +     P   +F   +I  WT         ++GNHDIGY  +++   ++++ + +G  N 
Sbjct: 138 VGNSSLPAR-TFENGNIPVWT---------IAGNHDIGYGCESSDAQISKWEQAMGPVN- 186

Query: 244 WIEYNAGTDNAWRIIVLNDLLLEGP----------------------ALQPELLETNWEF 281
           W+ +   +    R+I +N L L+                        AL  E  +  W+F
Sbjct: 187 WVSHFNVSKFPVRVIGINSLSLDDVQFYDANPSDIINSKSFSSLGILALSKEARDA-WQF 245

Query: 282 LYQLFERKFEGS--TVLLTHIPFYKPSGLCYDGPEFRYYPEDYQREPYKSKLLRSQNHLS 339
           L+ +     E S  T+L TH+P YKP+ +C D P       D++        ++SQNHLS
Sbjct: 246 LFDI---ALEPSIPTILFTHVPLYKPANVCVDEPRI-VRQLDFR--------VKSQNHLS 293

Query: 340 AEASNRVLNLIFDAEKPGIILTGHDHEGCETVYNKDDKGNWTASKTTDPKNLNIKEITVR 399
              + ++  LI   +   ++L+GHDH GC+  +                      E T+ 
Sbjct: 294 YNTTMKIFELIPSIK---LVLSGHDHMGCDYEHPN-----------------GAIEHTLP 333

Query: 400 SMMGEYHGNTGLV 412
           S MG + GN G V
Sbjct: 334 SAMGYFGGNIGFV 346


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.139    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,620,123
Number of Sequences: 60738
Number of extensions: 1484414
Number of successful extensions: 2938
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2929
Number of HSP's gapped (non-prelim): 3
length of query: 458
length of database: 30,389,216
effective HSP length: 110
effective length of query: 348
effective length of database: 23,708,036
effective search space: 8250396528
effective search space used: 8250396528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)