ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV1150    good          A     KOG3801  RNA processing and modification                                Uncharacterized conserved protein BCN92

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV1150 403312  403584 91   
         (91 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER048w-a [A] KOG3801 Uncharacterized conserved protein BCN92         112   1e-25
HsM9966893 [A] KOG3801 Uncharacterized conserved protein BCN92         82   1e-16
7290272 [A] KOG3801 Uncharacterized conserved protein BCN92            69   1e-12
SPBC13G1.06c [A] KOG3801 Uncharacterized conserved protein BCN92       60   5e-10
At5g61220 [A] KOG3801 Uncharacterized conserved protein BCN92          54   4e-08
CE11002_1 [A] KOG3801 Uncharacterized conserved protein BCN92          50   5e-07

>YER048w-a [A] KOG3801 Uncharacterized conserved protein BCN92
          Length = 94

 Score =  112 bits (279), Expect = 1e-25
 Identities = 52/88 (59%), Positives = 68/88 (77%)

Query: 4  TGASKTQILHMYKEFIRNASKIQNYNFREYFLRRARESFRANKNVENPEKISELLSEAEK 63
          T  ++ Q+L +YKEFI+NA++  NYNFREYFL + R +FR N N ++P+ +  L  EA+ 
Sbjct: 5  TAPTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKN 64

Query: 64 DLGVLKRQSVISNMYTFDKLVVEPLKKR 91
          DLGVLKRQSVIS MYTFD+LVVEPL+ R
Sbjct: 65 DLGVLKRQSVISQMYTFDRLVVEPLQGR 92


>HsM9966893 [A] KOG3801 Uncharacterized conserved protein BCN92
          Length = 91

 Score = 82.4 bits (202), Expect = 1e-16
 Identities = 34/81 (41%), Positives = 60/81 (73%)

Query: 6  ASKTQILHMYKEFIRNASKIQNYNFREYFLRRARESFRANKNVENPEKISELLSEAEKDL 65
          +S+ Q+L +Y+  +R + +   YN+R Y +RR R++FR NKNV++P +I  L+++A++DL
Sbjct: 4  SSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDL 63

Query: 66 GVLKRQSVISNMYTFDKLVVE 86
          GV++RQ  I  +Y+ DKL++E
Sbjct: 64 GVIRRQVHIGQLYSTDKLIIE 84


>7290272 [A] KOG3801 Uncharacterized conserved protein BCN92
          Length = 92

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 28/84 (33%), Positives = 58/84 (68%)

Query: 6  ASKTQILHMYKEFIRNASKIQNYNFREYFLRRARESFRANKNVENPEKISELLSEAEKDL 65
          +++ Q + +Y+  +R + K+ +YNFR Y  R+ R++FRAN++  +  +I   ++E +++L
Sbjct: 2  STRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQNL 61

Query: 66 GVLKRQSVISNMYTFDKLVVEPLK 89
           +++RQ +I ++Y+ DKLV+E  K
Sbjct: 62 ELIRRQVIIGHLYSADKLVIENKK 85


>SPBC13G1.06c [A] KOG3801 Uncharacterized conserved protein BCN92
          Length = 102

 Score = 60.1 bits (144), Expect = 5e-10
 Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 7  SKTQILHMYKEFIRNASKIQNYNFREYFLRRARESFRANKNVENPEKISELLSEAEKDLG 66
          SK  ++ +Y+  ++  SK+  Y +REY +RR R+ F+  K   +P K  + + ++EK L 
Sbjct: 4  SKQHVVRLYRNILKT-SKLFPYTYREYTIRRTRDKFKELKVESDPAKFEQGIKDSEKLLE 62

Query: 67 VLKRQSVISNMYTFDKLVVE 86
          +++RQS+I+ MY    LVVE
Sbjct: 63 IIQRQSIINGMYNKRNLVVE 82


>At5g61220 [A] KOG3801 Uncharacterized conserved protein BCN92
          Length = 87

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 7  SKTQILHMYKEFIRNASKIQNYNFREYFLRRARESFRANKNVENPEKISELLSEAEKDLG 66
          S +++L + +  +R   +  +YN REY  RR  + FR NKN+ +P K++E  +EA+K L 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 67 VLKR 70
          V +R
Sbjct: 63 VAER 66


>CE11002_1 [A] KOG3801 Uncharacterized conserved protein BCN92
          Length = 143

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 24  KIQNYNFREYFLRRARESFRANKNVENPEKISELLSEAEKDLGVLKRQSVISNMYTFDKL 83
           +I  YN+R +F RR R+ F AN+ V +  +  +L  E +K L  LKRQ++   +Y  +K 
Sbjct: 46  QIPQYNYRSFFQRRIRDHFVANRAVCDVTEQKKLYEEGQKQLESLKRQAIFCKLYPHNKT 105

Query: 84  VVE 86
           +VE
Sbjct: 106 IVE 108


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.132    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,667,050
Number of Sequences: 60738
Number of extensions: 152505
Number of successful extensions: 666
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 6
length of query: 91
length of database: 30,389,216
effective HSP length: 67
effective length of query: 24
effective length of database: 26,319,770
effective search space: 631674480
effective search space used: 631674480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)