ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1165 good J KOG3162 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein S18
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1165 410281 409817 -155
(155 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER050c [J] KOG3162 Mitochondrial/chloroplast ribosomal protein S18 119 2e-27
SPCC18B5.04 [J] KOG3162 Mitochondrial/chloroplast ribosomal prot... 74 8e-14
Hs22055525 [J] KOG3162 Mitochondrial/chloroplast ribosomal prote... 51 7e-07
Hs7705630 [J] KOG3162 Mitochondrial/chloroplast ribosomal protei... 50 1e-06
>YER050c [J] KOG3162 Mitochondrial/chloroplast ribosomal protein S18
Length = 202
Score = 119 bits (297), Expect = 2e-27
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 39 KKLESKLIKNFQPGSVYNPFDFSLERIHLDKKFGVRPGSF-DPFNKLKINPLDLYTNPEF 97
KK++ L K G++Y+PFDFS+ RIHLD+K+ S + K NPL+ Y P
Sbjct: 103 KKIDQSLSKKLPKGTIYDPFDFSMGRIHLDRKYQANKNSNRNDIMKSGANPLEFYARPRI 162
Query: 98 LSRFVTSTGKILHRDVTGLSAKNQRRLTKAIKRCQAIGLM 137
LSR+VTSTG+I HRD+TGLSAKNQRRL+KAI+RCQAIGLM
Sbjct: 163 LSRYVTSTGRIQHRDITGLSAKNQRRLSKAIRRCQAIGLM 202
>SPCC18B5.04 [J] KOG3162 Mitochondrial/chloroplast ribosomal protein S18
Length = 166
Score = 73.9 bits (180), Expect = 8e-14
Identities = 47/131 (35%), Positives = 70/131 (52%), Gaps = 8/131 (6%)
Query: 21 DQKLLKEGMSEANSKPTIKK-----LESKLIKNFQPGSVYNPFDFSLERIHLDK--KFGV 73
D + E SEA+S ++ + S L + + G +Y+P D E + KF
Sbjct: 33 DNRKFNERNSEASSNVGFQRRVRSNIPSYLSASVEEGDIYSPNDLLFETVKAKNQAKF-Y 91
Query: 74 RPGSFDPFNKLKINPLDLYTNPEFLSRFVTSTGKILHRDVTGLSAKNQRRLTKAIKRCQA 133
P D F + NP++ + NP LSRFVT G+I R TGL+AKNQR L++AI+R +A
Sbjct: 92 EPVREDCFKTVNENPMNYWKNPVILSRFVTELGRIKPRGDTGLTAKNQRLLSRAIRRARA 151
Query: 134 IGLMSKVHKDI 144
G+M +K +
Sbjct: 152 AGIMPTKYKSV 162
>Hs22055525 [J] KOG3162 Mitochondrial/chloroplast ribosomal protein S18
Length = 157
Score = 50.8 bits (120), Expect = 7e-07
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 92 YTNPEFLSRFVTS-TGKILHRDVTGLSAKNQRRLTKAIKRCQAIGLMSKVHKDISVL 147
Y N + LS+FV+ TG I R VTGL K Q+ +TKAIKR Q +G M +KD + L
Sbjct: 89 YKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYL 145
>Hs7705630 [J] KOG3162 Mitochondrial/chloroplast ribosomal protein S18
Length = 142
Score = 50.1 bits (118), Expect = 1e-06
Identities = 27/57 (47%), Positives = 36/57 (62%), Gaps = 1/57 (1%)
Query: 92 YTNPEFLSRFVTS-TGKILHRDVTGLSAKNQRRLTKAIKRCQAIGLMSKVHKDISVL 147
Y N + LS+FV+ TG I R +TGL K Q+ +TKAIKR Q +G M +KD + L
Sbjct: 74 YKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYL 130
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,128,261
Number of Sequences: 60738
Number of extensions: 374250
Number of successful extensions: 904
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 30,389,216
effective HSP length: 97
effective length of query: 58
effective length of database: 24,497,630
effective search space: 1420862540
effective search space used: 1420862540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)