ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV1177    good          DA    KOG2609  Cell cycle control, cell division, chromosome partitioning     Cyclin D-interacting protein GCIP
r_klactV1177    good          DA    KOG2609  RNA processing and modification                                Cyclin D-interacting protein GCIP

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV1177 413942 413280 -221 
         (221 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR129w [DA] KOG2609 Cyclin D-interacting protein GCIP                103   2e-22
7303695 [DA] KOG2609 Cyclin D-interacting protein GCIP                 52   8e-07
SPBC3E7.13c [DA] KOG2609 Cyclin D-interacting protein GCIP             51   1e-06

>YGR129w [DA] KOG2609 Cyclin D-interacting protein GCIP
          Length = 215

 Score =  103 bits (257), Expect = 2e-22
 Identities = 66/211 (31%), Positives = 108/211 (50%), Gaps = 27/211 (12%)

Query: 38  DLMEIEKKLKSLRKQKVEVSIRNKKAI---IAEEKKNSERRVYSMADDGEDKARSNKSEP 94
           D  ++++KLK L++++V+VSI+++K     I E   N + RVYSM D  +       +E 
Sbjct: 2   DFYKLDEKLKELKRKRVDVSIKSRKLADREIQEVSANRKPRVYSMEDVNDADESVGDTES 61

Query: 95  EDPIKLANYSIREYEKWEAKTQNSRHNKSVMG--DFQTIAKNSYKKEVDALPKDISH--- 149
            +  K  +Y+++EY+ WE +    +  +S  G   +  +AK SY+K +  L     +   
Sbjct: 62  PEKEKAFHYTVQEYDAWERRHPQGKTGQSQRGGISYDQLAKLSYEKTLRNLATQTQNSSK 121

Query: 150 -------------PLKGGI------TEDGKVQVEDNPELVEKMVNDLNERSKKRYMVRKQ 190
                        P KG I      T+ GK+ + D+ +LV K+   L   SKKRY  RK+
Sbjct: 122 QDSSADEEDNKNVPKKGRIGKVQKDTKTGKITIADDDKLVNKLAVSLQSESKKRYEARKR 181

Query: 191 KLDKQNKINLDDGFINDKNKRFNAKLNSEFK 221
           ++     +   + FINDKNK+FN KL+ E K
Sbjct: 182 QMQNAKTLYGVESFINDKNKQFNEKLSRESK 212


>7303695 [DA] KOG2609 Cyclin D-interacting protein GCIP
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 23/199 (11%)

Query: 39  LMEIEKKLKSLRKQKVEVSIRNKKAIIAEEK-----KNSERRV----YSMADDGEDKARS 89
           L E + +L  L K++ E    N + ++AE+      KN E R     + +ADD       
Sbjct: 11  LAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQAEWILADDKARAEAQ 70

Query: 90  NKSEPEDPIKLANYSIREYEKWEAKTQNSRHNKSVMGDFQTIAKNSYKKEVDALP----- 144
              +  + +KL   S  + ++ E K +   +       ++      Y + V ++P     
Sbjct: 71  AAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTARQYNRLVKSMPARDLE 130

Query: 145 ------KDISHPLKGGITEDGKVQVEDNPELVEKMVNDLNERSKKRYMVRKQKLDKQNKI 198
                 +++     GG       + +D P  + KMV DL ++ ++R    ++++      
Sbjct: 131 KYERQKEELGDAFYGGAHTTLHSRTKDTPGAINKMVTDLEQQIERRKKYSRRRIYND--- 187

Query: 199 NLDDGFINDKNKRFNAKLN 217
           + D  FIN++N +FN KL+
Sbjct: 188 DADVDFINERNSKFNKKLD 206


>SPBC3E7.13c [DA] KOG2609 Cyclin D-interacting protein GCIP
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 45/200 (22%), Positives = 90/200 (44%), Gaps = 31/200 (15%)

Query: 44  KKLKSLRKQKVEVSIRNKKAIIAEEKKNS-----ERRVYSMADDGEDKARSNKSEPE--- 95
           +KLK +R+Q  + S  N+K ++ E  +       ERR+     + E++    ++E E   
Sbjct: 13  EKLKKIREQMRKSSHENRKEVVQEHSRMRIDPALERRLERKRMEAEEELAKIETEEEGGD 72

Query: 96  -DPIKLANYSIREYEKWEAKTQNSRHN--KSVMGDFQTIAKNSYKKEVDALPKDISHPLK 152
            +  +  +++I E EKW+ + +  +         D+ + A   Y + +  L  D     K
Sbjct: 73  FERRRAWDWTIEESEKWDQRLRKKKQTIQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDK 132

Query: 153 GGITEDGK---------------VQVEDNPELVEKMVNDLNERSKKRYMVRKQK-LDKQN 196
               E  K               V  + + E VE++V  + ++ ++R    K++  D+++
Sbjct: 133 DKKEEKSKSRSVALYDEAERLDWVSNKPDKEHVERLVESIKKQDQRRLKNTKRRGTDEED 192

Query: 197 KINLDDGFINDKNKRFNAKL 216
            I     FIN++N++FN KL
Sbjct: 193 HIT----FINERNRKFNLKL 208


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.309    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,582,368
Number of Sequences: 60738
Number of extensions: 587349
Number of successful extensions: 2900
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2895
Number of HSP's gapped (non-prelim): 3
length of query: 221
length of database: 30,389,216
effective HSP length: 102
effective length of query: 119
effective length of database: 24,193,940
effective search space: 2879078860
effective search space used: 2879078860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)