ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1190 suspect: LH R KOG0255 General function prediction only Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1190 417851 417354 -166
(166 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
YPR156c [R] KOG0255 Synaptic vesicle transporter SVOP and relate... 48 7e-06
>YPR156c [R] KOG0255 Synaptic vesicle transporter SVOP and related
transporters (major facilitator superfamily)
Length = 622
Score = 47.8 bits (112), Expect = 7e-06
Identities = 33/98 (33%), Positives = 53/98 (53%), Gaps = 14/98 (14%)
Query: 29 QSSPLSKISTTQEVEDYV------KDNVQKGE-----TDSIDSLKATNLDLSKKAIPGFN 77
++S LS + + Q+ + Y+ K N+ + T+++ SL+ + SK +P N
Sbjct: 14 ETSSLSDVES-QQPQQYIPSESGSKSNMAPNQLKLTRTETVKSLQDMGVS-SKAPVPDVN 71
Query: 78 QP-IAEGAEFPEEYEIETRTGLVKVATLHQLNRLDTRV 114
P ++ FPEEY +ET TGLV VATLH + R T +
Sbjct: 72 APQSSKNKIFPEEYTLETPTGLVPVATLHSIGRTSTAI 109
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.131 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,844,517
Number of Sequences: 60738
Number of extensions: 253395
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 1
length of query: 166
length of database: 30,389,216
effective HSP length: 98
effective length of query: 68
effective length of database: 24,436,892
effective search space: 1661708656
effective search space used: 1661708656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)