ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1243.1 check: MH A KOG3482 RNA processing and modification Small nuclear ribonucleoprotein (snRNP) SMF
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1243.1 437827 438165 113
(113 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR182w [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 96 8e-21
SPBC3E7.14 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 92 1e-19
CE00446 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 84 2e-17
7303504 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 82 9e-17
Hs4507131 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 82 2e-16
Hs14755615 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 82 2e-16
At4g30220 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 81 2e-16
SPAC2F3.17c [A] KOG1783 Small nuclear ribonucleoprotein F 57 4e-09
Hs5901998 [A] KOG1783 Small nuclear ribonucleoprotein F 57 5e-09
CE22886 [A] KOG1783 Small nuclear ribonucleoprotein F 56 9e-09
ECU04g0790 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF 54 3e-08
7291213 [A] KOG1783 Small nuclear ribonucleoprotein F 52 1e-07
At3g59810 [A] KOG1783 Small nuclear ribonucleoprotein F 52 2e-07
At2g43810 [A] KOG1783 Small nuclear ribonucleoprotein F 50 4e-07
YBL026w [A] KOG3448 Predicted snRNP core protein 41 3e-04
YDR378c [A] KOG1783 Small nuclear ribonucleoprotein F 37 0.004
ECU10g1580 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) S... 37 0.006
7294589 [A] KOG3448 Predicted snRNP core protein 37 0.006
CE23975 [A] KOG3448 Predicted snRNP core protein 36 0.008
Hs10863977 [A] KOG3448 Predicted snRNP core protein 35 0.013
SPBC4B4.05 [A] KOG1780 Small Nuclear ribonucleoprotein G 33 0.065
Hs14741936 [A] KOG1774 Small nuclear ribonucleoprotein E 32 0.11
YKL124w [R] KOG1477 SPRY domain-containing proteins 31 0.25
Hs4506077 [T] KOG2397 Protein kinase C substrate 80 KD protein h... 31 0.25
At1g03330 [A] KOG3448 Predicted snRNP core protein 31 0.25
Hs4507129 [A] KOG1774 Small nuclear ribonucleoprotein E 31 0.32
Hs14765206 [A] KOG1774 Small nuclear ribonucleoprotein E 30 0.42
At1g20580 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3 30 0.42
Hs5454046 [U] KOG1985 Vesicle coat complex COPII subunit SEC24/s... 30 0.55
7297315 [A] KOG1774 Small nuclear ribonucleoprotein E 30 0.71
At1g58050 [A] KOG0920 ATP-dependent RNA helicase A 29 0.93
7298673 [F] KOG2070 Guanine nucleotide exchange factor 29 0.93
YLR438c-a [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 29 1.2
CE18225 [O] KOG4295 Serine proteinase inhibitor (KU family) 29 1.2
At4g30330 [A] KOG1774 Small nuclear ribonucleoprotein E 29 1.2
YML102w [BL] KOG1009 Chromatin assembly complex 1 subunit B/CAC2... 28 1.6
SPBC9B6.05c [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) ... 28 1.6
At2g18740 [A] KOG1774 Small nuclear ribonucleoprotein E 28 1.6
At1g76860 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 28 1.6
At1g61850 [I] KOG4231 Intracellular membrane-bound Ca2+-independ... 28 1.6
ECU09g1805 [A] KOG3448 Predicted snRNP core protein 28 2.1
CE23346 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3 28 2.1
At1g69190 [H] KOG2544 Dihydropteroate synthase/78-dihydro-6-hydr... 28 2.1
HsM7657637 [K] KOG1548 Transcription elongation factor TAT-SF1 28 2.7
Hs21361437 [K] KOG1548 Transcription elongation factor TAT-SF1 28 2.7
CE28950 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related L... 28 2.7
CE11940 [K] KOG3600 Thyroid hormone receptor-associated protein ... 28 2.7
At5g27720 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP) 28 2.7
At3g57150 [J] KOG2529 Pseudouridine synthase 28 2.7
At2g19930 [A] KOG0988 RNA-directed RNA polymerase QDE-1 required... 28 2.7
7297687 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP) 28 2.7
At2g02380 [O] KOG0868 Glutathione S-transferase 27 3.5
7301084 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 27 3.5
7298127 [Q] KOG0158 Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies 27 3.5
SPAC27D7.07c [A] KOG3428 Small nuclear ribonucleoprotein SMD1 an... 27 4.6
Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 27 4.6
At1g21190 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 27 4.6
At1g03360 [A] KOG3013 Exosomal 3'-5' exoribonuclease complex sub... 27 4.6
YOR159c [A] KOG1774 Small nuclear ribonucleoprotein E 27 6.0
YCL054w [AR] KOG1098 Putative SAM-dependent rRNA methyltransfera... 27 6.0
Hs7657315 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 27 6.0
Hs6857826 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 27 6.0
Hs4502289 [P] KOG0204 Calcium transporting ATPase 27 6.0
Hs20539426 [R] KOG1710 MYND Zn-finger and ankyrin repeat protein 27 6.0
Hs14733321 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 27 6.0
ECU03g0840 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3 27 6.0
CE29626 [K] KOG0155 Transcription factor CA150 27 6.0
CE28173 [K] KOG0155 Transcription factor CA150 27 6.0
CE28172 [K] KOG0155 Transcription factor CA150 27 6.0
7304036 [Q] KOG0158 Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies 27 6.0
YML104c [ZUD] KOG2101 Intermediate filament-like protein sorting... 26 7.9
YGR187c [S] KOG2973 Uncharacterized conserved protein 26 7.9
SPBC19C2.14 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3 26 7.9
Hs7662438 [R] KOG1721 FOG: Zn-finger 26 7.9
At2g02390 [O] KOG0868 Glutathione S-transferase 26 7.9
At1g70060 [B] KOG4204 Histone deacetylase complex SIN3 component 26 7.9
At1g58060 [A] KOG0920 ATP-dependent RNA helicase A 26 7.9
7302150 [D] KOG0834 CDK9 kinase-activating protein cyclin T 26 7.9
Hs17433806_2 [R] KOG3209 WW domain-containing protein 26 7.9
>YPR182w [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 86
Score = 95.9 bits (237), Expect = 8e-21
Identities = 45/78 (57%), Positives = 56/78 (71%)
Query: 3 DPEEFKPINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSS 62
D +P+NPKPFL L++ V V LKFN +Y+G LVS D YFNLQL +AEE + VS
Sbjct: 6 DISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSH 65
Query: 63 GKVGDIFIRCNNVLYVGE 80
G +G+IFIRCNNVLY+ E
Sbjct: 66 GTLGEIFIRCNNVLYIRE 83
>SPBC3E7.14 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 78
Score = 92.0 bits (227), Expect = 1e-19
Identities = 45/74 (60%), Positives = 58/74 (77%), Gaps = 1/74 (1%)
Query: 7 FKPINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVG 66
F P+NPKPFL LI K VLV LK+ + +YKG L SVD+Y NLQL +AEE+++ V +G +G
Sbjct: 3 FVPVNPKPFLQGLIGKPVLVRLKWGQ-EYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLG 61
Query: 67 DIFIRCNNVLYVGE 80
+I IRCNNVL+VGE
Sbjct: 62 EILIRCNNVLWVGE 75
>CE00446 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 85
Score = 84.3 bits (207), Expect = 2e-17
Identities = 42/72 (58%), Positives = 54/72 (74%), Gaps = 1/72 (1%)
Query: 8 KPINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGD 67
+P+NPKPFL+ L K V+ LK+ ++YKG LV+VD+Y NLQL AEE I+ S G +G+
Sbjct: 5 QPVNPKPFLNSLTGKFVVCKLKWG-MEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGE 63
Query: 68 IFIRCNNVLYVG 79
I IRCNNVLYVG
Sbjct: 64 ILIRCNNVLYVG 75
>7303504 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 84
Score = 82.4 bits (202), Expect = 9e-17
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 9 PINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDI 68
PINPKPFL+ L K VLV LK+ + +YKG LVSVD Y N+QL + EE+I +G +G++
Sbjct: 2 PINPKPFLNGLTGKPVLVKLKWGQ-EYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEV 60
Query: 69 FIRCNNVLYV 78
IRCNNVLY+
Sbjct: 61 LIRCNNVLYI 70
>Hs4507131 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 86
Score = 81.6 bits (200), Expect = 2e-16
Identities = 39/70 (55%), Positives = 52/70 (73%), Gaps = 1/70 (1%)
Query: 9 PINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDI 68
P+NPKPFL+ L K V+V LK+ ++YKG LVSVD Y N+QL + EE I+ SG +G++
Sbjct: 4 PLNPKPFLNGLTGKPVMVKLKWG-MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 69 FIRCNNVLYV 78
IRCNNVLY+
Sbjct: 63 LIRCNNVLYI 72
>Hs14755615 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 86
Score = 81.6 bits (200), Expect = 2e-16
Identities = 39/70 (55%), Positives = 52/70 (73%), Gaps = 1/70 (1%)
Query: 9 PINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDI 68
P+NPKPFL+ L K V+V LK+ ++YKG LVSVD Y N+QL + EE I+ SG +G++
Sbjct: 4 PLNPKPFLNGLTGKPVMVKLKWG-MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 69 FIRCNNVLYV 78
IRCNNVLY+
Sbjct: 63 LIRCNNVLYI 72
>At4g30220 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 88
Score = 81.3 bits (199), Expect = 2e-16
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 9 PINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDI 68
P+NPKPFL+ L K V+V LK+ ++YKG L SVD+Y NLQL + EE I+ +G +G+I
Sbjct: 5 PVNPKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEI 63
Query: 69 FIRCNNVLYV 78
IRCNNVLYV
Sbjct: 64 LIRCNNVLYV 73
>SPAC2F3.17c [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 75
Score = 57.0 bits (136), Expect = 4e-09
Identities = 31/68 (45%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 11 NPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFI 70
+P FL+++I K VL+ L + + YKG L +D Y NL L EE +N + GD FI
Sbjct: 4 SPNEFLNKVIGKKVLIRLS-SGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFI 62
Query: 71 RCNNVLYV 78
R NNVLYV
Sbjct: 63 RGNNVLYV 70
>Hs5901998 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 80
Score = 56.6 bits (135), Expect = 5e-09
Identities = 29/67 (43%), Positives = 39/67 (57%), Gaps = 1/67 (1%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIR 71
P FL Q+I + V+V L + + Y+G L +D Y N+ L EE +N K GD FIR
Sbjct: 8 PSDFLKQIIGRPVVVKLN-SGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIR 66
Query: 72 CNNVLYV 78
NNVLY+
Sbjct: 67 GNNVLYI 73
>CE22886 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 77
Score = 55.8 bits (133), Expect = 9e-09
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 11 NPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFI 70
NP FL ++I K V+V L + + Y+G L +D Y N+ L EE N K GD FI
Sbjct: 6 NPAEFLKKVIGKPVVVKLN-SGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFI 64
Query: 71 RCNNVLYV 78
R NNVLY+
Sbjct: 65 RGNNVLYI 72
>ECU04g0790 [A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF
Length = 81
Score = 54.3 bits (129), Expect = 3e-08
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 11 NPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFI 70
NPK FL ++ ++ V V LK+ ++ Y+G LV+ D YFN+ L + E + +S K+G++ I
Sbjct: 13 NPKQFLQRMKNRSVRVALKWGQV-YEGTLVASDNYFNILLDECTEREGE-ASVKIGEVSI 70
Query: 71 RCNNVLYVGE 80
RCNN+ + E
Sbjct: 71 RCNNIKRICE 80
>7291213 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 79
Score = 52.0 bits (123), Expect = 1e-07
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNN 74
F++Q+ + V V L N + Y+G L +D Y N+ L EE +N K GD FIR NN
Sbjct: 10 FINQIHGRPVAVKLN-NGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGDAFIRGNN 68
Query: 75 VLYV 78
VLY+
Sbjct: 69 VLYI 72
>At3g59810 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 91
Score = 51.6 bits (122), Expect = 2e-07
Identities = 26/67 (38%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIR 71
P FL + + V+V L + + Y+G L +D Y N+ + EE +N K GD FIR
Sbjct: 15 PADFLKSIRGRPVVVKLN-SGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
Query: 72 CNNVLYV 78
NNVLY+
Sbjct: 74 GNNVLYI 80
>At2g43810 [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 91
Score = 50.4 bits (119), Expect = 4e-07
Identities = 27/76 (35%), Positives = 38/76 (49%), Gaps = 1/76 (1%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIR 71
P FL + K V+V L + + Y+G L +D Y N+ + EE +N GD F+R
Sbjct: 15 PADFLKSIRGKPVVVKLN-SGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVR 73
Query: 72 CNNVLYVGEDVNKQSD 87
NNVLY+ SD
Sbjct: 74 GNNVLYISTTKGTLSD 89
>YBL026w [A] KOG3448 Predicted snRNP core protein
Length = 95
Score = 40.8 bits (94), Expect = 3e-04
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQL-----TDAEEIINDVSSGKVGDIF 69
F L+D++V+V LK N I+ KG L SVD + NL+L TD ++ + G V +IF
Sbjct: 6 FFKTLVDQEVVVELK-NDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPH---LGSVRNIF 61
Query: 70 IRCNNVLYV 78
IR + V YV
Sbjct: 62 IRGSTVRYV 70
>YDR378c [A] KOG1783 Small nuclear ribonucleoprotein F
Length = 123
Score = 37.0 bits (84), Expect = 0.004
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 13/74 (17%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEE--------IINDVSSGKVG 66
FL +I K V V L + + Y GRL S+D + N+ L+ A E ++N +S
Sbjct: 52 FLSDIIGKTVNVKLA-SGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNS---- 106
Query: 67 DIFIRCNNVLYVGE 80
D+F+R V+Y+ E
Sbjct: 107 DVFLRGTQVMYISE 120
>ECU10g1580 [A] KOG3459 Small nuclear ribonucleoprotein (snRNP) Sm core protein
Length = 135
Score = 36.6 bits (83), Expect = 0.006
Identities = 30/101 (29%), Positives = 50/101 (48%), Gaps = 16/101 (15%)
Query: 22 KDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVS-------------SGKVGDI 68
K VLV+L+ N+ + GR+V+ D ++NL + DA+E+ S K+G +
Sbjct: 33 KPVLVSLRSNR-KVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKRQGCEFSRKLGKV 91
Query: 69 FIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKEENGELA 109
FIR + V+ V ++ + DQ K +D GE+A
Sbjct: 92 FIRGDTVILVAGEI--EVDQVEKDGLEDGKGEDASLPGEVA 130
>7294589 [A] KOG3448 Predicted snRNP core protein
Length = 95
Score = 36.6 bits (83), Expect = 0.006
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSG--KVGDIFIRC 72
F L+ K+V+V LK N + G L SVD Y N++LTD D V + FIR
Sbjct: 6 FFKSLVGKEVVVELK-NDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRG 64
Query: 73 NNVLYV---GEDVNKQ 85
+ V YV G++V+ Q
Sbjct: 65 SVVRYVQLPGDEVDTQ 80
>CE23975 [A] KOG3448 Predicted snRNP core protein
Length = 103
Score = 36.2 bits (82), Expect = 0.008
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLT-----DAEEIINDVSSGKVGDIF 69
F L+ KDV+V LK N + G L SVD Y N++LT D E + VS V + F
Sbjct: 12 FFKSLVGKDVVVELK-NDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVS---VKNCF 67
Query: 70 IRCNNVLYV 78
IR + V YV
Sbjct: 68 IRGSVVRYV 76
>Hs10863977 [A] KOG3448 Predicted snRNP core protein
Length = 95
Score = 35.4 bits (80), Expect = 0.013
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTD 52
F L+ KDV+V LK N + G L SVD Y N++LTD
Sbjct: 6 FFKSLVGKDVVVELK-NDLSICGTLHSVDQYLNIKLTD 42
>SPBC4B4.05 [A] KOG1780 Small Nuclear ribonucleoprotein G
Length = 77
Score = 33.1 bits (74), Expect = 0.065
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 14 PFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCN 73
P L + +D+ V V L ++ Y G L D + N+ L D+ E D K+G + IR N
Sbjct: 7 PDLKKYLDRQVFVQLNGSRKVY-GVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGN 65
Query: 74 NVLYV 78
+V+ +
Sbjct: 66 SVIMI 70
>Hs14741936 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 92
Score = 32.3 bits (72), Expect = 0.11
Identities = 17/44 (38%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
Query: 33 IQYKGRLVSVDTYFNLQLTDAEEIINDVSSGK-VGDIFIRCNNV 75
+Q +G ++ D Y NL L DAEEI + S K +G I ++ +N+
Sbjct: 41 MQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNI 84
>YKL124w [R] KOG1477 SPRY domain-containing proteins
Length = 579
Score = 31.2 bits (69), Expect = 0.25
Identities = 19/55 (34%), Positives = 26/55 (46%)
Query: 53 AEEIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKEENGE 107
++E+ V+ G+VG +FI N Y V Q PP GT K D + GE
Sbjct: 390 SDEVELHVNLGQVGFVFIEANVKKYAFGSVYGQIGIPPAYNGTEIKKDTILQKGE 444
>Hs4506077 [T] KOG2397 Protein kinase C substrate 80 KD protein heavy chain
Length = 527
Score = 31.2 bits (69), Expect = 0.25
Identities = 12/27 (44%), Positives = 19/27 (69%)
Query: 85 QSDQPPTPTGTTEKSDDKEENGELAEE 111
+ +QPP P+ TE+ +++EE E AEE
Sbjct: 301 KEEQPPVPSSPTEEEEEEEEEEEEAEE 327
>At1g03330 [A] KOG3448 Predicted snRNP core protein
Length = 93
Score = 31.2 bits (69), Expect = 0.25
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSG--KVGDIFIRC 72
+ L+ ++V V LK N + +G L SVD Y N++L + + D V + FIR
Sbjct: 6 YFKDLVGQEVTVELK-NDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
Query: 73 NNVLYV 78
+ V YV
Sbjct: 65 SVVRYV 70
>Hs4507129 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 92
Score = 30.8 bits (68), Expect = 0.32
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 33 IQYKGRLVSVDTYFNLQLTDAEEIINDVSSGK-VGDIFIRCNNV 75
++ +G ++ D Y NL L DAEEI + S K +G I ++ +N+
Sbjct: 41 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNI 84
>Hs14765206 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 92
Score = 30.4 bits (67), Expect = 0.42
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Query: 33 IQYKGRLVSVDTYFNLQLTDAEEIINDVSSGK-VGDIFIRCNNV 75
++ +G ++ D Y NL L DAEEI + S K +G I ++ N+
Sbjct: 41 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNI 84
>At1g20580 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3
Length = 131
Score = 30.4 bits (67), Expect = 0.42
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 1/67 (1%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIR 71
P LH+ V V LK ++ Y+G ++ + +N QL D D ++ +FIR
Sbjct: 8 PVKLLHEASGHIVTVELKSGEL-YRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIR 66
Query: 72 CNNVLYV 78
+ V ++
Sbjct: 67 GSKVRFM 73
>Hs5454046 [U] KOG1985 Vesicle coat complex COPII subunit SEC24/subunit SFB2
Length = 1268
Score = 30.0 bits (66), Expect = 0.55
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 79 GEDVNKQSDQPPTPTGTTEKSDDKEENGELA 109
GE VN Q+ PTP +T +++EE E A
Sbjct: 358 GEYVNNQASSAPTPLSSTSDDEEEEEEDEEA 388
>7297315 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 94
Score = 29.6 bits (65), Expect = 0.71
Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
Query: 33 IQYKGRLVSVDTYFNLQLTDAEEI-INDVSSGKVGDIFIRCNNVLYV 78
++ +G +V D Y NL L DAEE+ + +G I ++ +N+ +
Sbjct: 40 LRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRNLGRIMLKGDNITLI 86
>At1g58050 [A] KOG0920 ATP-dependent RNA helicase A
Length = 1417
Score = 29.3 bits (64), Expect = 0.93
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDT 44
PK LHQL + + KFNK+ +GR S T
Sbjct: 396 PKALLHQLCQRSGWIAPKFNKVTGEGRNFSYTT 428
>7298673 [F] KOG2070 Guanine nucleotide exchange factor
Length = 1333
Score = 29.3 bits (64), Expect = 0.93
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 39 LVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNNVLYVGEDVNKQS--DQPPTP 92
++ V F+LQ ++ + + + ++G F C N+ + +D++++S +PPTP
Sbjct: 269 ILKVKPSFSLQQQSSDA--SSIFAARLGGAFTACENLASMPDDLSRESSIQEPPTP 322
>YLR438c-a [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 89
Score = 28.9 bits (63), Expect = 1.2
Identities = 22/86 (25%), Positives = 39/86 (44%), Gaps = 1/86 (1%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIR 71
P L +D+ V + L+ + G L + D++ N+ L+DA E I +++ ++ + R
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLV-GTLQAFDSHCNIVLSDAVETIYQLNNEELSESERR 62
Query: 72 CNNVLYVGEDVNKQSDQPPTPTGTTE 97
C V G+ V S G E
Sbjct: 63 CEMVFIRGDTVTLISTPSEDDDGAVE 88
>CE18225 [O] KOG4295 Serine proteinase inhibitor (KU family)
Length = 1965
Score = 28.9 bits (63), Expect = 1.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 4 PEEFKPINPKPFLHQLIDKDVLVTLKFNKIQY 35
PE+F P + + F++ I +V T KF++++Y
Sbjct: 717 PEKFPPAHEQGFVNFAIKSEVTATTKFDRLKY 748
>At4g30330 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 86
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/44 (31%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Query: 33 IQYKGRLVSVDTYFNLQLTDAEEI-INDVSSGKVGDIFIRCNNV 75
++ +GR+ D Y NL L +AEE+ I + +G I ++ +N+
Sbjct: 37 LRIEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNI 80
>YML102w [BL] KOG1009 Chromatin assembly complex 1 subunit B/CAC2 (contains
WD40 repeats)
Length = 468
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/62 (27%), Positives = 28/62 (44%), Gaps = 4/62 (6%)
Query: 50 LTDAEEIINDVSSGKVGDIFIRCNN----VLYVGEDVNKQSDQPPTPTGTTEKSDDKEEN 105
LT E+ IN + GD+ + +L+ ED N Q + P G ++ + +EN
Sbjct: 67 LTHHEQAINVIRFNSKGDVLASAGDDGQVLLWKQEDPNTQQESVVRPFGMDAETSEADEN 126
Query: 106 GE 107
E
Sbjct: 127 KE 128
>SPBC9B6.05c [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 93
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/46 (34%), Positives = 27/46 (57%), Gaps = 1/46 (2%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEII 57
P + +D+ V V L+ ++ + GRL + D + N+ L DAEEI+
Sbjct: 10 PLDLVRLSLDEIVYVKLRGDR-ELNGRLHAYDEHLNMVLGDAEEIV 54
>At2g18740 [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 88
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/44 (31%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Query: 33 IQYKGRLVSVDTYFNLQLTDAEEI-INDVSSGKVGDIFIRCNNV 75
++ +GR+ D Y NL L +AEE+ I + +G I ++ +N+
Sbjct: 37 LRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNI 80
>At1g76860 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 98
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Query: 1 MQDPEEFKPINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDV 60
M EE P + +D+ + V L+ ++ + +G+L + D + N+ L D EE I V
Sbjct: 1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDR-ELRGKLHAFDQHLNMILGDVEETITTV 59
>At1g61850 [I] KOG4231 Intracellular membrane-bound Ca2+-independent
phospholipase A2
Length = 1265
Score = 28.5 bits (62), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 78 VGEDVNKQSDQPPTPTGTTEKSDDKEEN 105
V E+ ++ +PPTPT E SD ++ N
Sbjct: 1181 VNEETEREEMEPPTPTSDWEDSDHEKTN 1208
>ECU09g1805 [A] KOG3448 Predicted snRNP core protein
Length = 94
Score = 28.1 bits (61), Expect = 2.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNN 74
F I V V LK + GRL +D Y NL L D + + + IR ++
Sbjct: 6 FFRSSIGSRVSVMLKAG-VYVSGRLGGIDPYLNLSLLDVRILSSHPGLSSISVCSIRGSS 64
Query: 75 VLYV 78
+ Y+
Sbjct: 65 IKYI 68
>CE23346 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3
Length = 136
Score = 28.1 bits (61), Expect = 2.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 35 YKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNNVLYV 78
Y+G+L + N QL + D S ++ ++FIR N + ++
Sbjct: 29 YRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFM 72
>At1g69190 [H] KOG2544 Dihydropteroate
synthase/78-dihydro-6-hydroxymethylpterin-
pyrophosphokinase/Dihydroneopterin aldolase
Length = 459
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/39 (38%), Positives = 25/39 (63%), Gaps = 6/39 (15%)
Query: 34 QYKGRLVSVDTYFNLQ-----LTDAEEIINDVSSGKVGD 67
+ KG+L+SVDT FN + + + +I+NDVS G + +
Sbjct: 252 EMKGKLISVDT-FNSEVALEAIRNGADILNDVSGGSLDE 289
>HsM7657637 [K] KOG1548 Transcription elongation factor TAT-SF1
Length = 754
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 80 EDVNKQSDQPPTPTGTTEKSDDKEENGELAEE 111
+D+NK+S++ PT +E+ D ++E+ E E
Sbjct: 522 DDLNKESEEEVGPTKESEEDDSEKESDEDCSE 553
>Hs21361437 [K] KOG1548 Transcription elongation factor TAT-SF1
Length = 755
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 80 EDVNKQSDQPPTPTGTTEKSDDKEENGELAEE 111
+D+NK+S++ PT +E+ D ++E+ E E
Sbjct: 523 DDLNKESEEEVGPTKESEEDDSEKESDEDCSE 554
>CE28950 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related La domain
proteins
Length = 1109
Score = 27.7 bits (60), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 59 DVSSGKVGDIFIRCNNVLYVGEDVNKQSDQP---PTPTGTTEKSD 100
D+ + KV I N + ED K SD+P P P+GT D
Sbjct: 747 DIPTSKVSTISAEQFNEMRGNEDAKKTSDEPPEIPLPSGTQPTPD 791
>CE11940 [K] KOG3600 Thyroid hormone receptor-associated protein complex
subunit TRAP240
Length = 2911
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 81 DVNKQSDQPPTPTGTTEKSDDKEENGELAEEAN 113
D ++ P + T ++SDD EEN E+++E N
Sbjct: 2023 DFEEELKLPEAGSETIDESDDDEENEEVSKEEN 2055
>At5g27720 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
Length = 129
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 8/59 (13%)
Query: 24 VLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSG----KVGDIFIRCNNVLYV 78
+LV LK N Y G LV+ DT+ N+ L E+I G ++ + +IR N + Y+
Sbjct: 15 MLVELK-NGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPECYIRGNTIKYL 69
>At3g57150 [J] KOG2529 Pseudouridine synthase
Length = 565
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 54 EEIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKEENGELAEE 111
EEI D +G+ G+ R ++ S P P TT+KS KE GE AEE
Sbjct: 425 EEIKADAENGEAGEARKRKHD----------DSSDSPAPV-TTKKSKTKEVEGEEAEE 471
>At2g19930 [A] KOG0988 RNA-directed RNA polymerase QDE-1 required for
posttranscriptional gene silencing and RNA interference
Length = 929
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (60%)
Query: 16 LHQLIDKDVLVTLKFNKIQYKGRLVSVDTYF 46
LH+++ D ++T+KF +Q S+D YF
Sbjct: 205 LHKVLGDDNVLTVKFADVQKSSSTYSIDHYF 235
>7297687 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
Length = 153
Score = 27.7 bits (60), Expect = 2.7
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 7/48 (14%)
Query: 24 VLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIR 71
+LV LK N Y G LVS D++ N+ L D + + K GD F R
Sbjct: 14 MLVELK-NGETYNGHLVSCDSWMNINLRDV------ICTSKDGDRFWR 54
>At2g02380 [O] KOG0868 Glutathione S-transferase
Length = 223
Score = 27.3 bits (59), Expect = 3.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 2 QDPEEFKPINPKPFLHQLIDKDVLVTLKFNKIQY 35
Q +FK INP + L+D DV++ F I Y
Sbjct: 49 QSDSDFKKINPMGTVPALVDGDVVINDSFAIIMY 82
>7301084 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 143
Score = 27.3 bits (59), Expect = 3.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 31 NKIQYKGRLVSVDTYFNLQLTDAEEIINDV 60
N+ + +GRL + D + N+ L DAEE + V
Sbjct: 3 NERELRGRLHAFDQHLNMVLGDAEETVTTV 32
>7298127 [Q] KOG0158 Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies
Length = 505
Score = 27.3 bits (59), Expect = 3.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 24 VLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKV 65
V + ++F +Q K +V + + FN+++ D ND G++
Sbjct: 449 VCIGMRFATVQIKAAIVELISKFNVKINDKTRKDNDYEPGQI 490
>SPAC27D7.07c [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related
snRNPs
Length = 117
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
Query: 15 FLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNN 74
FL +L ++ V + LK I + G + SVD N L + + V + IR NN
Sbjct: 6 FLMKLTNETVSIELKNGTIVH-GTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNN 64
Query: 75 VLY 77
+ Y
Sbjct: 65 IRY 67
>Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 351
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (51%)
Query: 24 VLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVS 61
+L FN I+ KGR + VD N + E I+DV+
Sbjct: 91 ILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVT 128
>At1g21190 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 97
Score = 26.9 bits (58), Expect = 4.6
Identities = 13/49 (26%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDV 60
P + I++ + V L+ ++ + +G+L + D + N+ L D EE+I +
Sbjct: 12 PLDLIRLSIEERIYVKLRSDR-ELRGKLHAFDQHLNMILGDVEEVITTI 59
>At1g03360 [A] KOG3013 Exosomal 3'-5' exoribonuclease complex subunit Rrp4
Length = 322
Score = 26.9 bits (58), Expect = 4.6
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 29 KFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNNVLYVGEDV 82
K+ K++ KG+L+ VD Y + ++ + V S + D+ I CN ++VGE V
Sbjct: 175 KYGKLE-KGQLLKVDPYL---VKRSKHHFHYVESLGI-DLIIGCNGFIWVGEHV 223
>YOR159c [A] KOG1774 Small nuclear ribonucleoprotein E
Length = 94
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/54 (25%), Positives = 29/54 (52%), Gaps = 8/54 (14%)
Query: 33 IQYKGRLVSVDTYFNLQLTDAEEIINDVSSGK--------VGDIFIRCNNVLYV 78
I+ KG++V D + N+ + +A EI + + GK +G I ++ +N+ +
Sbjct: 37 IRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLI 90
>YCL054w [AR] KOG1098 Putative SAM-dependent rRNA methyltransferase SPB1
Length = 841
Score = 26.6 bits (57), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (58%), Gaps = 4/44 (9%)
Query: 43 DTYFNLQLTDAEEIINDVSSGKVGDIF----IRCNNVLYVGEDV 82
++ FNL+ + I+ND++ GK IF + +N +Y+ E++
Sbjct: 405 ESLFNLKTAEKTGILNDLAKGKKRMIFTDDELAKDNDIYIDENI 448
>Hs7657315 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 102
Score = 26.6 bits (57), Expect = 6.0
Identities = 13/49 (26%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDV 60
P + +D+ + V ++ N + +GRL + D + N+ L D EE + +
Sbjct: 17 PLDLIRLSLDERIYVKMR-NDRELRGRLHAYDQHLNMILGDVEETVTTI 64
>Hs6857826 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 305
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 70 IRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKEEN 105
++ ++L V E+ K S + P+PT ++SD+K ++
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKD 41
>Hs4502289 [P] KOG0204 Calcium transporting ATPase
Length = 1205
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/56 (26%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Query: 48 LQLTDAEEIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKE 103
+QL AE ++ D++ K GD+ + + +L G D+ + +KS DK+
Sbjct: 199 IQLPVAEIVVGDIAQVKYGDL-LPADGILIQGNDLKIDESSLTGESDHVKKSLDKD 253
>Hs20539426 [R] KOG1710 MYND Zn-finger and ankyrin repeat protein
Length = 441
Score = 26.6 bits (57), Expect = 6.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 43 DTYFNLQLTDAEEIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDK 102
D Y QL A+E + + GK+ D+ C N +QP G ++K +
Sbjct: 362 DIYEKQQLEAAKEKRQEENHGKL-DVNSNCVN-----------EEQPEAEVGISQKDSNP 409
Query: 103 EENGELAEEA 112
E++GE +E+
Sbjct: 410 EDSGEGKKES 419
>Hs14733321 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 305
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 70 IRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKEEN 105
++ ++L V E+ K S + P+PT ++SD+K ++
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKD 41
>ECU03g0840 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3
Length = 87
Score = 26.6 bits (57), Expect = 6.0
Identities = 19/67 (28%), Positives = 35/67 (51%), Gaps = 4/67 (5%)
Query: 12 PKPFLHQLIDKDVLVTLKFNK-IQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFI 70
P LH+ + +VT++ + Y+GR+ VD Y NL L D N+ S + ++ I
Sbjct: 6 PLKLLHE--SQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSLSR-KEVLI 62
Query: 71 RCNNVLY 77
R +++ +
Sbjct: 63 RGSSIRF 69
>CE29626 [K] KOG0155 Transcription factor CA150
Length = 693
Score = 26.6 bits (57), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 77 YVGEDVNKQSDQPPTPTGTTEKSDDKEENGELAE 110
Y EDV+K PP+P E + K+E+ +E
Sbjct: 158 YGREDVDKLVQNPPSPKAEEENNQSKKESESESE 191
>CE28173 [K] KOG0155 Transcription factor CA150
Length = 905
Score = 26.6 bits (57), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 77 YVGEDVNKQSDQPPTPTGTTEKSDDKEENGELAE 110
Y EDV+K PP+P E + K+E+ +E
Sbjct: 370 YGREDVDKLVQNPPSPKAEEENNQSKKESESESE 403
>CE28172 [K] KOG0155 Transcription factor CA150
Length = 914
Score = 26.6 bits (57), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 77 YVGEDVNKQSDQPPTPTGTTEKSDDKEENGELAE 110
Y EDV+K PP+P E + K+E+ +E
Sbjct: 379 YGREDVDKLVQNPPSPKAEEENNQSKKESESESE 412
>7304036 [Q] KOG0158 Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies
Length = 437
Score = 26.6 bits (57), Expect = 6.0
Identities = 17/54 (31%), Positives = 27/54 (49%)
Query: 3 DPEEFKPINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEI 56
DPEE K +P +L + L+F KIQ K LVS+ F +++ ++
Sbjct: 360 DPEEVKNRHPMAYLPFGDGPRNCIGLRFGKIQAKIGLVSLLRRFKFSVSNRTDV 413
>YML104c [ZUD] KOG2101 Intermediate filament-like protein sorting nexins and
related proteins containing PX (PhoX) domain(s)
Length = 1127
Score = 26.2 bits (56), Expect = 7.9
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 14 PFLHQLIDKDV----LVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGD 67
P + + D D +V+L N + K ++ + + +L D +++NDV++ VG+
Sbjct: 253 PLIFKFTDPDSWNLRIVSLSQNYFEEKHKVHKIRRMLSKELQDHRKVMNDVANKDVGE 310
>YGR187c [S] KOG2973 Uncharacterized conserved protein
Length = 394
Score = 26.2 bits (56), Expect = 7.9
Identities = 14/57 (24%), Positives = 28/57 (48%)
Query: 55 EIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKEENGELAEE 111
E+ +V + +G++ R N+L GE ++ P+ E+ ++ EE + EE
Sbjct: 331 ELHKNVENEDIGELCYRIVNMLMRGEPGAGAVEEMPSKNAEEEEEEESEEEEDDDEE 387
>SPBC19C2.14 [A] KOG3172 Small nuclear ribonucleoprotein Sm D3
Length = 97
Score = 26.2 bits (56), Expect = 7.9
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 25 LVTLKF-NKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIRCNNVLYV 78
+VT++ N Y+G+L+ + N Q+ D D + ++IR +++ ++
Sbjct: 15 IVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFL 69
>Hs7662438 [R] KOG1721 FOG: Zn-finger
Length = 644
Score = 26.2 bits (56), Expect = 7.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 53 AEEIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKEENGELAEE 111
A+ I N + GK G I ++ + + + D G TE+ D EEN + E
Sbjct: 441 AKHIENICACGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNTEEKMDLEENPDEQSE 499
>At2g02390 [O] KOG0868 Glutathione S-transferase
Length = 221
Score = 26.2 bits (56), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 2 QDPEEFKPINPKPFLHQLIDKDVLVTLKFNKIQY 35
Q +FK INP + L+D DV++ F I Y
Sbjct: 46 QFDSDFKKINPMGTVPALVDGDVVINDSFAIIMY 79
>At1g70060 [B] KOG4204 Histone deacetylase complex SIN3 component
Length = 1386
Score = 26.2 bits (56), Expect = 7.9
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 49 QLTDAEEIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSDQPPTPTGTTEKSDDKE 103
Q+ A E+ DV+S K D + C+N + P T E+++ K+
Sbjct: 803 QVRQASELDKDVTSSKTSDALLSCDN--------TQNDKMPKNLTTPDERAETKQ 849
>At1g58060 [A] KOG0920 ATP-dependent RNA helicase A
Length = 1453
Score = 26.2 bits (56), Expect = 7.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 12 PKPFLHQLIDKDVLVTLKFNKIQYKGR 38
PK FLHQL + KFNK +GR
Sbjct: 411 PKAFLHQLCQRSGWEAPKFNKETGEGR 437
>7302150 [D] KOG0834 CDK9 kinase-activating protein cyclin T
Length = 381
Score = 26.2 bits (56), Expect = 7.9
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 29 KFNKIQYKGRLVSVDTYFNLQLTDAE-EIINDVSSGKVGDIFIRCNNVLYVGEDVNKQSD 87
KF ++GR ++++ ++D EI+ D+ C+ VL + + K++
Sbjct: 199 KFTVQDWEGRQPQQQRWWDMFVSDVTMEILEDI-----------CHQVLDLYQSTQKEAL 247
Query: 88 QPPTPTGTTEKSDDKEENGEL 108
QP +P D ++G+L
Sbjct: 248 QPTSPPQKPPSRADSPKSGKL 268
>Hs17433806_2 [R] KOG3209 WW domain-containing protein
Length = 949
Score = 26.2 bits (56), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 89 PPTPTGTTEKSDDKEENGELAEEAN 113
PP+PT T + DK+EN E N
Sbjct: 481 PPSPTKTAKMKTDKKENAGSLEAIN 505
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,766,364
Number of Sequences: 60738
Number of extensions: 314927
Number of successful extensions: 892
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 81
length of query: 113
length of database: 30,389,216
effective HSP length: 89
effective length of query: 24
effective length of database: 24,983,534
effective search space: 599604816
effective search space used: 599604816
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)