ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1258 good U KOG3133 Intracellular trafficking, secretion, and vesicular transport 40 kDa farnesylated protein associated with peroxisomes
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1258 443101 442202 -300
(300 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL065c [U] KOG3133 40 kDa farnesylated protein associated with ... 184 1e-46
At5g17550 [U] KOG3133 40 kDa farnesylated protein associated wit... 62 1e-09
At3g03490 [U] KOG3133 40 kDa farnesylated protein associated wit... 55 2e-07
Hs4506339 [U] KOG3133 40 kDa farnesylated protein associated wit... 49 7e-06
>YDL065c [U] KOG3133 40 kDa farnesylated protein associated with peroxisomes
Length = 350
Score = 184 bits (468), Expect = 1e-46
Identities = 125/327 (38%), Positives = 169/327 (51%), Gaps = 49/327 (14%)
Query: 19 PRKLDEQEKQE-----TVPNEAVTKGEPATQSD------------DPEVVEMMEDLXXXX 61
P KLDE E + +V N++ K + A D DPE+ EMM DL
Sbjct: 28 PTKLDEAEPDDVQAKGSVYNDSENKEKNAESKDSDGVQVANESEEDPELKEMMVDLQNEF 87
Query: 62 XXXXXXEGGDTDQEMVQNFETLLTVLGDASKEKDHNSVKHVQEQLKSGT----------- 110
G + + + ++F L++ L +A+K H ++ LKS +
Sbjct: 88 ANLMKNNGNENNVK-TEDFNKLISALEEAAKVP-HQQMEQGCSSLKSNSTDKGTVNGSNP 145
Query: 111 GFKNIISNTLDRLKENSTKVDESLEEEKK-------NQNXXXXXXXXXXXXVEXXXXXXX 163
GFKNI+SNTLDRLKEN KVD SL EE K N N V
Sbjct: 146 GFKNIVSNTLDRLKENGNKVDTSLAEETKESQRSGQNNNIDDILSQLLDQMVASGGKESA 205
Query: 164 XXXXXXX------AILKMLSQMSSKEVLYQPMKQMQGEFTEWMGLHEEDPEHSDKIDNYK 217
AI K+L QM+SKEVLY+PMK+M+ EF W + E+ EH +KI YK
Sbjct: 206 ENQFDLKDGEMDDAITKILDQMTSKEVLYEPMKEMRSEFGVWFQENGENEEHKEKIGTYK 265
Query: 218 KQYALVNQIIGVFESDDYTNEKYHAEIADLLDELEQLGDSPVAKGTSNDP---GNDMSEL 274
+Q+ +V++I+ ++E DY K+ + +LLDELEQLGDSP+ ++N P GN+ EL
Sbjct: 266 RQFNIVDEIVNIYELKDYDELKHKDRVTELLDELEQLGDSPIR--SANSPLKHGNEEEEL 323
Query: 275 AKMLEIQG-DENLGNIDKDLEDTCKQQ 300
KMLEI G D NLGN+DK+L D CKQQ
Sbjct: 324 MKMLEIDGNDPNLGNLDKELTDGCKQQ 350
>At5g17550 [U] KOG3133 40 kDa farnesylated protein associated with peroxisomes
Length = 274
Score = 62.0 bits (149), Expect = 1e-09
Identities = 35/162 (21%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 116 ISNTLDRLKENSTKVDESLEEEKKNQNXXXXXXXXXXXXVEXXXXXXXXXXXXXXAILKM 175
++ LD+L+E + + + LE Q ++ + M
Sbjct: 105 VTEALDKLREQTRETVKGLESLSSKQQPTGSDDAMVEDWIKQFENLTGSNDLESI-VDTM 163
Query: 176 LSQMSSKEVLYQPMKQMQGEFTEWMGLHEEDPEHSDKIDNYKKQYALVNQIIGVFESDDY 235
+ Q+ SK++L++PMK++ + +W+ HE + ++ D Y +QY L+ ++ V+E++
Sbjct: 164 MQQLLSKDILHEPMKEIGARYPKWLEEHESS-LNKEEFDRYSRQYELIKELNLVYENEPN 222
Query: 236 TNEKYHAEIADLLDELEQLGDSPVAKGTSNDPGNDMSELAKM 277
+ K I +++ ++++ G P DPG D + L +M
Sbjct: 223 NSTK----IMEIMQKMQECGQPPSDIVQEMDPGFDFASLGQM 260
>At3g03490 [U] KOG3133 40 kDa farnesylated protein associated with peroxisomes
Length = 248
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/162 (20%), Positives = 73/162 (44%), Gaps = 6/162 (3%)
Query: 116 ISNTLDRLKENSTKVDESLEEEKKNQNXXXXXXXXXXXXVEXXXXXXXXXXXXXXAILKM 175
++ LD+L+E + + + LE Q ++ + M
Sbjct: 79 VAEALDKLREQTRETVKGLESISSKQLPASDDDGMVEDFLKQFEDLAGSKDLESI-VETM 137
Query: 176 LSQMSSKEVLYQPMKQMQGEFTEWMGLHEEDPEHSDKIDNYKKQYALVNQIIGVFESDDY 235
+ Q+ SK++L++PMK++ + +W+ +E D Y +QY L+ ++ V+E++
Sbjct: 138 MQQLLSKDILHEPMKELGARYPKWLKENEASLSKED-YKRYSQQYKLIEELNAVYENEPN 196
Query: 236 TNEKYHAEIADLLDELEQLGDSPVAKGTSNDPGNDMSELAKM 277
+ K I +++ ++++ G P DPG D + L ++
Sbjct: 197 NSSK----IMEIMQKMQECGQPPSDIVKEIDPGFDFASLGQI 234
>Hs4506339 [U] KOG3133 40 kDa farnesylated protein associated with peroxisomes
Length = 299
Score = 49.3 bits (116), Expect = 7e-06
Identities = 44/184 (23%), Positives = 80/184 (42%), Gaps = 22/184 (11%)
Query: 93 EKDHNSVKHVQEQLKSGTGFKNIISNTLDRLKENSTKVDESLEEEKKNQNXXXXXXXXXX 152
+K + V + S F + + TL L +N+T + S E++
Sbjct: 106 QKLSEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSEEE-----------LT 154
Query: 153 XXVEXXXXXXXXXXXXXXAILKMLSQ-MSSKEVLYQPMKQMQGEFTEWMGLHEED--PEH 209
+E I++ + Q + SK+VLY +K++ ++ EW+ H E PE
Sbjct: 155 KAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQ 214
Query: 210 SDKIDNYKKQYALVNQIIGVFE----SDDYTNEKYHAE-IADLLDELEQLGDSPVAKGTS 264
+K Y++Q++++ +I FE +D T +K E + DL+ +L+ LG P
Sbjct: 215 FEK---YQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAGE 271
Query: 265 NDPG 268
PG
Sbjct: 272 MPPG 275
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.304 0.126 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,853,674
Number of Sequences: 60738
Number of extensions: 640991
Number of successful extensions: 1567
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 4
length of query: 300
length of database: 30,389,216
effective HSP length: 106
effective length of query: 194
effective length of database: 23,950,988
effective search space: 4646491672
effective search space used: 4646491672
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)