ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1281 good J KOG3506 Translation, ribosomal structure and biogenesis 40S ribosomal protein S29
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1281 451602 451435 -56
(56 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL061c [J] KOG3506 40S ribosomal protein S29 104 3e-23
YLR388w [J] KOG3506 40S ribosomal protein S29 103 6e-23
SPBC1685.09 [J] KOG3506 40S ribosomal protein S29 99 1e-21
At3g44010 [J] KOG3506 40S ribosomal protein S29 82 1e-16
At3g43980 [J] KOG3506 40S ribosomal protein S29 82 1e-16
CE26849 [J] KOG3506 40S ribosomal protein S29 80 4e-16
7299254 [J] KOG3506 40S ribosomal protein S29 78 2e-15
Hs4506717 [J] KOG3506 40S ribosomal protein S29 77 4e-15
Hs22045088 [J] KOG3506 40S ribosomal protein S29 52 2e-07
Hs17448062 [J] KOG3506 40S ribosomal protein S29 47 5e-06
>YDL061c [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 104 bits (259), Expect = 3e-23
Identities = 45/56 (80%), Positives = 51/56 (90%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56
MAHENVW+SHPR+FGKGSRQCR+ SH+GL+RKY LNI RQ FREKANDIGF+KYR
Sbjct: 1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLVRKYDLNICRQCFREKANDIGFHKYR 56
>YLR388w [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 103 bits (256), Expect = 6e-23
Identities = 45/56 (80%), Positives = 51/56 (90%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56
MAHENVW+SHPR++GKGSRQCR+ SH+GLIRKYGLNI RQ FREKANDIGF K+R
Sbjct: 1 MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR 56
>SPBC1685.09 [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 99.0 bits (245), Expect = 1e-21
Identities = 45/56 (80%), Positives = 48/56 (85%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56
MAHENVW+SHPRK+GKGSRQC +G GLIRKYGLNI RQSFRE ANDIGF KYR
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVKYR 56
>At3g44010 [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 82.0 bits (201), Expect = 1e-16
Identities = 36/56 (64%), Positives = 41/56 (72%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56
M H NVW SHP+K+G GSR CR+ G+ GLIRKYGLN RQ FR A +IGF KYR
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56
>At3g43980 [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 82.0 bits (201), Expect = 1e-16
Identities = 36/56 (64%), Positives = 41/56 (72%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56
M H NVW SHP+K+G GSR CR+ G+ GLIRKYGLN RQ FR A +IGF KYR
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56
>CE26849 [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 80.5 bits (197), Expect = 4e-16
Identities = 34/54 (62%), Positives = 42/54 (76%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYK 54
M +N+W+SHPRKFG GSR CR+ H GLIRKYGL++ R+ FRE+A DIGF K
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKK 54
>7299254 [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 78.2 bits (191), Expect = 2e-15
Identities = 36/54 (66%), Positives = 40/54 (73%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYK 54
M +WYSHPRK+G+GSR CR + GLIRKYGLNI RQ FRE ANDIGF K
Sbjct: 1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54
>Hs4506717 [J] KOG3506 40S ribosomal protein S29
Length = 56
Score = 77.0 bits (188), Expect = 4e-15
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYK 54
M H+ +++SHPRKFG+GSR CR+ + GLIRKYGLN+ RQ FR+ A DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>Hs22045088 [J] KOG3506 40S ribosomal protein S29
Length = 127
Score = 52.0 bits (123), Expect = 2e-07
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 15 GKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYK 54
G+GSR CR+ + GLI+KYGLN+ Q FR+ A DIGF K
Sbjct: 86 GEGSRSCRVCSNRQGLIQKYGLNMCPQCFRQYAKDIGFIK 125
>Hs17448062 [J] KOG3506 40S ribosomal protein S29
Length = 349
Score = 47.0 bits (110), Expect = 5e-06
Identities = 17/38 (44%), Positives = 28/38 (72%)
Query: 1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNI 38
M H+ +++SH +KFG+GS C + + GLI+KYGL++
Sbjct: 1 MGHQQLYWSHQQKFGQGSCSCHVCSNQQGLIQKYGLHV 38
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,636,002
Number of Sequences: 60738
Number of extensions: 111277
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 10
length of query: 56
length of database: 30,389,216
effective HSP length: 32
effective length of query: 24
effective length of database: 28,445,600
effective search space: 682694400
effective search space used: 682694400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)