ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV1321    suspect: LH   L     KOG4141  Replication, recombination and repair                          DNA repair and recombination protein RAD52/RAD22

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV1321 465222 464596 -209 
         (209 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDL059c [L] KOG4141 DNA repair and recombination protein RAD52/R...   209   2e-54
ECU09g0930 [L] KOG4141 DNA repair and recombination protein RAD5...    49   5e-06

>YDL059c [L] KOG4141 DNA repair and recombination protein RAD52/RAD22
          Length = 238

 Score =  209 bits (533), Expect = 2e-54
 Identities = 105/207 (50%), Positives = 138/207 (65%), Gaps = 10/207 (4%)

Query: 5   TDISYEGTSYTVNTGLDIKDFQIEEDWYNRPASEWSVKRIGQLQGKVEQYTYRIYHSNKY 64
           + ISY+ T+Y    GLDIK+FQI EDW  RPAS WSV+RIG LQ K+E+YTY IYH+NKY
Sbjct: 9   SSISYDSTTYGTAPGLDIKEFQIIEDWNGRPASAWSVQRIGLLQSKIERYTYNIYHNNKY 68

Query: 65  GKHNLARLIPGHVLISFANECFGYDGWSSEVEEI--------TSLEHTENAASEDKRESH 116
           GKHNL++LIPGH LI FANE FGYDGW  +V ++        T++ + EN  + + +  +
Sbjct: 69  GKHNLSKLIPGHALIQFANETFGYDGWRMDVIDVEARECQPFTAVNNGENTNTSEVK--Y 126

Query: 117 TVLAEARVKLVLKDDTYTFAGGFGKSTMPXXXXXXXXXXXXXITDALKNCLLGFEKVILD 176
           TV+AEA+VK+ LKD T T  GG G+ T+              + DALK  LL FEK+ILD
Sbjct: 127 TVVAEAQVKVTLKDGTNTQCGGLGRITLSSRGECYNRSKKEAVGDALKKALLSFEKIILD 186

Query: 177 HEIKIKQNYYVDGVFKAEMSKIEGKTS 203
           +E KI  NYYVDG++ ++  K E  T+
Sbjct: 187 YETKITNNYYVDGLYGSKKIKNEANTN 213


>ECU09g0930 [L] KOG4141 DNA repair and recombination protein RAD52/RAD22
          Length = 204

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 73  IPGHVLISFANECFGYDGWSSEVEEITSLEHTENAASEDKRESHTVLAEARVKLVLKDDT 132
           + G  +IS AN  FG++GWSSE+  + S+++ E   +EDKR    V     V++ LKD T
Sbjct: 49  VEGWTIISLANRIFGFNGWSSEIRSM-SIDYEE---AEDKRVGLGV--SCLVRVTLKDGT 102

Query: 133 YTFAGGFGKS-TMPXXXXXXXXXXXXXITDALKNCLLGF 170
           Y    GFG +                  TDALK  L  F
Sbjct: 103 YREDIGFGSAENQKCRAMAYEKAKKEAATDALKRALRQF 141


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,819,629
Number of Sequences: 60738
Number of extensions: 447757
Number of successful extensions: 1164
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 2
length of query: 209
length of database: 30,389,216
effective HSP length: 102
effective length of query: 107
effective length of database: 24,193,940
effective search space: 2588751580
effective search space used: 2588751580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)