ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1466 good J KOG3291 Translation, ribosomal structure and biogenesis Ribosomal protein S7
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1466 513485 514276 264
(264 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR113c [J] KOG3291 Ribosomal protein S7 253 2e-67
SPAC16E8.10c [J] KOG3291 Ribosomal protein S7 96 4e-20
AtCh082 [J] KOG3291 Ribosomal protein S7 66 4e-11
AtCh068 [J] KOG3291 Ribosomal protein S7 66 4e-11
>YJR113c [J] KOG3291 Ribosomal protein S7
Length = 247
Score = 253 bits (646), Expect = 2e-67
Identities = 129/235 (54%), Positives = 167/235 (70%), Gaps = 8/235 (3%)
Query: 30 TMQTRFQSQSVNNNASTGEKLASLSDEQVDEWLKVIGSLEEEFSQQDYNPATSLAPGNQS 89
T RFQS SV AS +++ VDEWL+ I L EEFS ++Y P TSLAP QS
Sbjct: 21 TCVARFQS-SVRTPASEPS-----AEKGVDEWLEAINELREEFSAKEYLPETSLAPPGQS 74
Query: 90 RINILEKAMELNKPSFEPSQEQINEWETLKQVPIPKKQDPVLQHVTNMIMRHGKRERAEK 149
++++L+ + +K +P+ EQ+ +WE LK VPIP +++ L H+TNMIMRHGK+E+A+
Sbjct: 75 KVDLLQGSQAGSK--IKPTAEQLAQWEALKSVPIPPRKNATLDHITNMIMRHGKKEKAQT 132
Query: 150 ILSRALYIVFCQTRKDPVKVLKESLDVLAPLMVIKTFKTGVAKATVVPVPLNQRQRFRLA 209
ILSRALY+V+CQTR+DP++ L++SLD LAPLM+ KTF TGVAKA+V+PVPLN+RQR R+A
Sbjct: 133 ILSRALYLVYCQTRQDPIQALEKSLDELAPLMMTKTFNTGVAKASVIPVPLNKRQRNRIA 192
Query: 210 WKWIXXXXXXXXXXXXXXRLGEELVSVFNGNSSGFEKRDSIHKTAIAHRAYINLK 264
W WI RLGEEL ++ G SS FEKRD IHKTAIAHRAYI LK
Sbjct: 193 WNWIVQSANQRVSSDFAVRLGEELTAIAKGTSSAFEKRDQIHKTAIAHRAYIQLK 247
>SPAC16E8.10c [J] KOG3291 Ribosomal protein S7
Length = 241
Score = 96.3 bits (238), Expect = 4e-20
Identities = 66/233 (28%), Positives = 119/233 (50%), Gaps = 14/233 (6%)
Query: 32 QTR-FQSQSVNNNASTGEKLASLSDEQVDEWLKVIGSLEEEFSQQDYNPATSLAPGNQSR 90
QTR FQ +N EK+ +++ +W LE +Q + S +
Sbjct: 10 QTRTFQVGKFTSNEKYNEKIEDINERSNPQWDNA--GLENLLNQLQDSVEQS---ASDDF 64
Query: 91 INILEKAMELNKPSFEPSQEQINEWETLKQ-----VPIPKKQDPVLQHVTNMIMRHGKRE 145
+ LEK +E+ EP N W + + P + D +QH+ N+IMR GK+
Sbjct: 65 MGELEKKIEVENE--EPPLMGTNLWPSPSSSIVGLIDRPFQVDSTVQHLVNLIMRDGKKA 122
Query: 146 RAEKILSRALYIVFCQTRKDPVKVLKESLDVLAPLMVIKTFKTGVAKATVVPVPLNQRQR 205
+AEKI++ AL I+ +T ++P+ VLK+++ ++PLM + + K K+ P+PL +RQR
Sbjct: 123 KAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSAKR-FNKSVEFPMPLKERQR 181
Query: 206 FRLAWKWIXXXXXXXXXXXXXXRLGEELVSVFNGNSSGFEKRDSIHKTAIAHR 258
R+A +WI R+ +E++++ + S+ F+K+D +H+ + +R
Sbjct: 182 RRIALQWILGECKSSSPKRLSDRIVKEIIAIRSKTSNCFKKKDHLHRMCLVNR 234
>AtCh082 [J] KOG3291 Ribosomal protein S7
Length = 155
Score = 66.2 bits (160), Expect = 4e-11
Identities = 39/151 (25%), Positives = 75/151 (48%), Gaps = 3/151 (1%)
Query: 114 EWETLKQVPIPKKQDPVLQHVTNMIMRHGKRERAEKILSRALYIVFCQTRKDPVKVLKES 173
E +T K PI + + ++ + N I++HGK+ A +I+ RAL + +T +P+ VL+++
Sbjct: 8 EEKTAKSDPIYRNR--LVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQA 65
Query: 174 LDVLAPLMVIKTFKTGVAKATVVPVPLNQRQRFRLAWKWIXXXXXXXXXXXXXXRLGEEL 233
+ + P + +K + G VP+ + Q LA +W+ +L EL
Sbjct: 66 IRGVTPDIAVKARRVG-GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSEL 124
Query: 234 VSVFNGNSSGFEKRDSIHKTAIAHRAYINLK 264
V G+ K++ H+ A A+RA+ + +
Sbjct: 125 VDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
>AtCh068 [J] KOG3291 Ribosomal protein S7
Length = 155
Score = 66.2 bits (160), Expect = 4e-11
Identities = 39/151 (25%), Positives = 75/151 (48%), Gaps = 3/151 (1%)
Query: 114 EWETLKQVPIPKKQDPVLQHVTNMIMRHGKRERAEKILSRALYIVFCQTRKDPVKVLKES 173
E +T K PI + + ++ + N I++HGK+ A +I+ RAL + +T +P+ VL+++
Sbjct: 8 EEKTAKSDPIYRNR--LVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQA 65
Query: 174 LDVLAPLMVIKTFKTGVAKATVVPVPLNQRQRFRLAWKWIXXXXXXXXXXXXXXRLGEEL 233
+ + P + +K + G VP+ + Q LA +W+ +L EL
Sbjct: 66 IRGVTPDIAVKARRVG-GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSEL 124
Query: 234 VSVFNGNSSGFEKRDSIHKTAIAHRAYINLK 264
V G+ K++ H+ A A+RA+ + +
Sbjct: 125 VDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,294,121
Number of Sequences: 60738
Number of extensions: 544279
Number of successful extensions: 1902
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1896
Number of HSP's gapped (non-prelim): 4
length of query: 264
length of database: 30,389,216
effective HSP length: 104
effective length of query: 160
effective length of database: 24,072,464
effective search space: 3851594240
effective search space used: 3851594240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)