ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1504.1 good U KOG1586 Intracellular trafficking, secretion, and vesicular transport Protein required for fusion of vesicles in vesicular transport, alpha-SNAP
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1504.1 530916 530197 -240
(240 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBL050w [U] KOG1586 Protein required for fusion of vesicles in v... 285 3e-77
SPAC959.02 [U] KOG1586 Protein required for fusion of vesicles i... 216 3e-56
At3g56190 [U] KOG1586 Protein required for fusion of vesicles in... 140 2e-33
Hs4505329 [U] KOG1586 Protein required for fusion of vesicles in... 136 2e-32
Hs17484764 [U] KOG1586 Protein required for fusion of vesicles i... 130 2e-30
7293665 [U] KOG1586 Protein required for fusion of vesicles in v... 130 2e-30
CE27369_2 [U] KOG1586 Protein required for fusion of vesicles in... 106 3e-23
At3g56450 [U] KOG1586 Protein required for fusion of vesicles in... 78 1e-14
Hs14719410 [R] KOG1124 FOG: TPR repeat 34 0.21
7293815 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein 33 0.27
YPL235w [K] KOG2680 DNA helicase TIP49 TBP-interacting protein 33 0.36
At5g67630 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein 33 0.46
SPBC83.08 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein 32 0.61
CE01031 [H] KOG2672 Lipoate synthase 32 0.79
At3g49830 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein 32 1.0
CE05411 [D] KOG0018 Structural maintenance of chromosome protein... 31 1.8
At1g09170 [Z] KOG0239 Kinesin (KAR3 subfamily) 31 1.8
Hs5730023 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein 30 2.3
At5g24350 [S] KOG1797 Uncharacterized conserved protein (Neurobl... 30 2.3
Hs5454124 [U] KOG2580 Mitochondrial import inner membrane transl... 30 3.0
CE17254 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein 30 3.0
At2g41720 [R] KOG4197 FOG: PPR repeat 30 3.0
YDR495c_2 [U] KOG2063 Vacuolar assembly/sorting proteins VPS39/V... 29 5.1
YER041w [L] KOG2520 5'-3' exonuclease 29 6.7
YBR049c [K] KOG0051 RNA polymerase I termination factor Myb supe... 29 6.7
7300484 [U] KOG2580 Mitochondrial import inner membrane transloc... 29 6.7
7297645 [R] KOG1124 FOG: TPR repeat 29 6.7
At3g05520 [Z] KOG0836 F-actin capping protein alpha subunit 28 8.8
>YBL050w [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 292
Score = 285 bits (730), Expect = 3e-77
Identities = 138/240 (57%), Positives = 180/240 (74%)
Query: 1 MDQAGDTFLRAAECQIQASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQ 60
++ AGD+FL+AA+ Q +A NEDEAGNTY+EAYKCFK+G + A +SL +I IFT RGQ
Sbjct: 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112
Query: 61 FRRGANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNG 120
FRRGANFKF DY AI YE AG+WY QDQ++ALSNK +IKCADLKAL+G
Sbjct: 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172
Query: 121 DYLEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSF 180
Y+EA++I K++++S+GN+LSQWSLK+Y LK GLC LAA D VAA ++L E QS DP+F
Sbjct: 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232
Query: 181 SQSREFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTIVEADDDLL 240
+ SRE L ++I+AV EGD+E+LS+ E+D F +LD WK TIL K+K +I + +DDLL
Sbjct: 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQEDDLL 292
>SPAC959.02 [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 289
Score = 216 bits (549), Expect = 3e-56
Identities = 104/236 (44%), Positives = 156/236 (66%), Gaps = 1/236 (0%)
Query: 4 AGDTFLRAAECQIQASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQFRR 63
AG F +AAE Q++ ++D+A +TY+EA+K ++ P++AA L +I++FTRRG FRR
Sbjct: 54 AGYAFEKAAEMQLKTDDKDDAASTYVEAFKSYRR-EKPSEAARVLQIAIELFTRRGNFRR 112
Query: 64 GANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNGDYL 123
AN+K D +A+ YE AG+WY DQA AL+NK+Y+K ADL L G+Y
Sbjct: 113 AANYKMDLGDIFEQELQDTKAALGAYEDAGEWYSSDQADALANKAYLKAADLAGLCGEYS 172
Query: 124 EATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQS 183
A ++V S+ N L +WS+K+YLLK GLCY+A GD +A ++L +DPSF+ +
Sbjct: 173 LAIRKFEQVARASVQNNLLKWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPSFAST 232
Query: 184 REFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTIVEADDDL 239
RE++LL ++ + + D + K++ YD+ +KLD WKTTILLK+K++I EA+DDL
Sbjct: 233 REYQLLKDLQDTIEASDANMFADKVFTYDQLSKLDSWKTTILLKIKSSIQEAEDDL 288
>At3g56190 [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 289
Score = 140 bits (352), Expect = 2e-33
Identities = 75/240 (31%), Positives = 133/240 (55%), Gaps = 6/240 (2%)
Query: 2 DQAGDTFLRAAECQIQASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQF 61
DQAG +L+ A+C +++ ++ +A N Y EA KC+K + +AA L ++++IF G+
Sbjct: 50 DQAGKAYLKLADCHLKSDSKHDAANAYAEAAKCYKKVDTN-EAASCLERAVNIFCEIGRL 108
Query: 62 RRGANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNGD 121
A + + + AIA +E A +++ ++ +N+ +K A A
Sbjct: 109 NMAARY-YKEIAEYYESDQKFEQAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYAAQLEQ 167
Query: 122 YLEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFS 181
Y +A +I + + +SL N L ++ +K +LL G+C+L DVV+ +L + Q LDP+F+
Sbjct: 168 YEKAIKIYEDIARHSLNNNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFT 227
Query: 182 QSREFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTI----VEADD 237
+RE + L+++ A+ E D K + + E+D LD WKTT+LL+VK + +E DD
Sbjct: 228 GTRECKFLADLASAIDEEDIAKFTDVVKEFDSMTPLDSWKTTMLLRVKEKLKAKELEEDD 287
>Hs4505329 [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 295
Score = 136 bits (343), Expect = 2e-32
Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 2/236 (0%)
Query: 4 AGDTFLRAAECQIQASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQFRR 63
AG+ F +AA+ +Q ++ +A +++A FK + P +A L ++I+I+T G+F
Sbjct: 61 AGNAFCQAAQLHLQLQSKHDAATCFVDAGNAFKK-ADPQEAINCLMRAIEIYTDMGRFTI 119
Query: 64 GANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNGDYL 123
A D AIA+YE + D+Y +++ + +NK +K A AL Y
Sbjct: 120 AAKHHISIAEIYETELVDIEKAIAHYEQSADYYKGEESNSSANKCLLKVAGYAALLEQYQ 179
Query: 124 EATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQS 183
+A +I ++V N++ L ++S K+Y K LC+ D++ A ++ + + L P+FS S
Sbjct: 180 KAIDIYEQVGTNAMDTPLLKYSAKDYFFKAALCHFCI-DMLNAKLAVQKYEELFPAFSDS 238
Query: 184 REFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTIVEADDDL 239
RE +L+ ++EA E + + ++ + EYD ++LD W TT+LL++K TI ++DL
Sbjct: 239 RECKLMKKLLEAHEEQNVDSYTESVKEYDSISRLDQWLTTMLLRIKKTIQGDEEDL 294
>Hs17484764 [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 298
Score = 130 bits (326), Expect = 2e-30
Identities = 74/239 (30%), Positives = 132/239 (54%), Gaps = 5/239 (2%)
Query: 4 AGDTFLRAAECQIQASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQFRR 63
AG+ F +AA+ +Q ++ ++ ++++A +K + P +A L +IDI+T G+F
Sbjct: 61 AGNAFCQAAKLHMQLQSKHDSATSFVDAGNAYKK-ADPQEAINCLNAAIDIYTDMGRFTI 119
Query: 64 GANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNGDYL 123
A D AIA+YE + D+Y +++ + +NK +K A A Y
Sbjct: 120 AAKHHITIAEIYETELVDIEKAIAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQYQ 179
Query: 124 EATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQS 183
+A EI ++V N++ N L ++S K+Y K LC+ D + A +L + + + P+F+ S
Sbjct: 180 KAIEIYEQVGANTMDNPLLKYSAKDYFFKAALCHFIV-DELNAKLALEKYEEMFPAFTDS 238
Query: 184 REFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTIV---EADDDL 239
RE +LL ++EA E ++E ++ + E+D ++LD W TT+LL++K +I E D DL
Sbjct: 239 RECKLLKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTTMLLRIKKSIQGDGEGDGDL 297
>7293665 [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 292
Score = 130 bits (326), Expect = 2e-30
Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 2/235 (0%)
Query: 3 QAGDTFLRAAECQIQASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQFR 62
+AG+ F AA +A + +AG Y++A C+K + A L KSIDI+T G+F
Sbjct: 58 KAGECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVES-AVNCLMKSIDIYTDMGRFT 116
Query: 63 RGANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNGDY 122
A + +I +YE A D++ +++++ +NK +K A A DY
Sbjct: 117 MAAKHHQSIAEMYESDPNNLAKSIQHYEQAADYFKGEESVSSANKCMLKVAQYAAQLEDY 176
Query: 123 LEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQ 182
+A I ++V +SL + L ++S KEY + LC+L+ D++ A ++ + P+F
Sbjct: 177 EKAISIYEQVAASSLESSLLKYSAKEYFFRAALCHLSV-DLLNAQHAIEKYAQQYPAFQD 235
Query: 183 SREFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTIVEADD 237
SREF+L+ + E + E + E ++ + +YD ++LD W TTILL++K E D
Sbjct: 236 SREFKLIKVLCENLEEQNIEGFTEAVKDYDSISRLDQWYTTILLRIKKAADEDPD 290
>CE27369_2 [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 250
Score = 106 bits (265), Expect = 3e-23
Identities = 62/236 (26%), Positives = 118/236 (49%), Gaps = 3/236 (1%)
Query: 4 AGDTFLRAAECQIQ-ASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQFR 62
AGD FL AAE + ++ + Y EA CF+ P +A + L K+ +I+T G+F
Sbjct: 14 AGDAFLEAAEFYAKNGDSKHDCATQYAEAANCFRK-IQPERAVQCLEKTSEIYTDMGRFT 72
Query: 63 RGANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNGDY 122
A D + +Y+ A D+Y ++ + ++K +K A A Y
Sbjct: 73 MAAKNHVSIAELYETELPDKEQCVKHYQQAADYYKGEEQKSSASKCLVKVAMYSAELEKY 132
Query: 123 LEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQ 182
+A + +++ + +++ K + + LC+L D + ++L + ++ PSF+
Sbjct: 133 SQAIAVFEEIAFFEADHSTLKYAAKGHFFQALLCHLCI-DPINTQQALQKYENASPSFTD 191
Query: 183 SREFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTIVEADDD 238
SRE + + ++ A+ E E ++ + +D+ ++LD+W T++LLKVK TI D+D
Sbjct: 192 SRECKFVKELLAAIDEKKEETFTECVANFDKISRLDNWSTSLLLKVKRTIEGEDED 247
>At3g56450 [U] KOG1586 Protein required for fusion of vesicles in vesicular
transport alpha-SNAP
Length = 381
Score = 78.2 bits (191), Expect = 1e-14
Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 39/216 (18%)
Query: 2 DQAGDTFLRAAECQIQASNEDEAGNTYIEAYKCFKTGSSPAQAAESLAKSIDIFTRRGQF 61
DQAG +L+ A+C ++A++ NTY+ +C + ++ +
Sbjct: 138 DQAGIAYLKLADCHLKANS---LANTYMIMDECMDHEIAEYYESDEM------------- 181
Query: 62 RRGANFKFXXXXXXXXXXXDYPSAIANYETAGDWYLQDQAIALSNKSYIKCADLKALNGD 121
+ AIA YETA +++ ++ +N+ +K A +
Sbjct: 182 --------------------FEQAIAYYETAAEFFQIEEVTTSANQCNLKVAQYAS---Q 218
Query: 122 YLEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFS 181
+ + +K +SL NKL ++ +K +LL G+C+L DVV+ +L + Q LDP+FS
Sbjct: 219 LEQQSRFMKTQARHSLNNKLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFS 278
Query: 182 QSREFELLSNVIEAVREGDTEKLSQKIYEYDRFNKL 217
+RE + L+++ A+ E D K + E D + L
Sbjct: 279 GTRECKFLADLASAIDEEDIAKFTDVSKEIDSVSPL 314
>Hs14719410 [R] KOG1124 FOG: TPR repeat
Length = 519
Score = 33.9 bits (76), Expect = 0.21
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 108 SYIKCADLKALNGDYLEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAAD 167
+YI + L GD +A E+ KK VE S N E L +GL YL G A
Sbjct: 170 TYIMLGKIHLLEGDLDKAIEVYKKAVEFSPEN-------TELLTTLGLLYLQLGIYQKAF 222
Query: 168 KSLNESQSLDPS 179
+ L + + DP+
Sbjct: 223 EHLGNALTYDPT 234
>7293815 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein
Length = 481
Score = 33.5 bits (75), Expect = 0.27
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 137 LGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAV 196
LGNK+ + +KE + AGDV+ DK+ + L SF+++R+++ V
Sbjct: 170 LGNKIIECFMKEKI--------QAGDVITIDKASGKVNKLGRSFTRARDYDATGAQTRFV 221
Query: 197 R--EGDTEKLSQ-----KIYEYDRFNKLDH 219
+ EG+ +K + ++E D N H
Sbjct: 222 QCPEGELQKRKEVVHTVTLHEIDVINSRTH 251
>YPL235w [K] KOG2680 DNA helicase TIP49 TBP-interacting protein
Length = 471
Score = 33.1 bits (74), Expect = 0.36
Identities = 22/69 (31%), Positives = 37/69 (52%), Gaps = 10/69 (14%)
Query: 137 LGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAV 196
LGNK+ KE +L AGDV++ DK+ + L SF++SR+++ + V
Sbjct: 171 LGNKMIDGLTKEKVL--------AGDVISIDKASGKITKLGRSFARSRDYDAMGADTRFV 222
Query: 197 R--EGDTEK 203
+ EG+ +K
Sbjct: 223 QCPEGELQK 231
>At5g67630 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein
Length = 469
Score = 32.7 bits (73), Expect = 0.46
Identities = 16/52 (30%), Positives = 32/52 (60%), Gaps = 2/52 (3%)
Query: 160 AGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAVR--EGDTEKLSQKIY 209
+GDV+A DK+ + L SFS+SR+++ + + V+ EG+ +K + ++
Sbjct: 186 SGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVH 237
>SPBC83.08 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein
Length = 465
Score = 32.3 bits (72), Expect = 0.61
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 137 LGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAV 196
LG K+ KE +L AGDV++ DKS+ L SFS++R+++ + V
Sbjct: 168 LGTKMIDSLTKEKVL--------AGDVISIDKSVGRVTKLGRSFSRARDYDAMGADTRFV 219
Query: 197 R--EGDTEKLSQKIY 209
+ +G+ +K + ++
Sbjct: 220 QCPQGEIQKRKEVVH 234
>CE01031 [H] KOG2672 Lipoate synthase
Length = 354
Score = 32.0 bits (71), Expect = 0.79
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 113 ADLKALN------GDYLEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAA 166
ADL+A N G Y++ T+ V E K QW+ EY K+G Y+A+G +V +
Sbjct: 279 ADLRASNVDVVTFGQYMQPTKRHLLVKEWVTPEKFDQWA--EYSKKLGFLYVASGPLVRS 336
Query: 167 DKSLNE 172
E
Sbjct: 337 SYKAGE 342
>At3g49830 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein
Length = 473
Score = 31.6 bits (70), Expect = 1.0
Identities = 15/52 (28%), Positives = 32/52 (60%), Gaps = 2/52 (3%)
Query: 160 AGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAVR--EGDTEKLSQKIY 209
+GDV+ D+ + L SF++SR+F+++ + + V+ EG+ EK + ++
Sbjct: 187 SGDVIVLDRFCGKITKLGRSFTRSRDFDVMGSKTKFVQCPEGELEKRKEVLH 238
>CE05411 [D] KOG0018 Structural maintenance of chromosome protein 1 (sister
chromatid cohesion complex Cohesin subunit SMC1)
Length = 542
Score = 30.8 bits (68), Expect = 1.8
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 121 DYLEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSF 180
DY E E KK ++ + + L++ + KI C+L ++ K +++
Sbjct: 318 DYTELPEYYKKESDDIIATSYKRSMLEKEIKKIRQCWLDENNI----KDDANIDNINMRI 373
Query: 181 SQSREFELLSNVIEAVREGDTEKLSQKIYEYDRFNKLDHWKTTILLKVKNTIVEADDDL 239
++ L+ IE+ + EK+S ++ RFN T L ++ I + +D L
Sbjct: 374 KEATTKHTLALNIESEARLNWEKVSLRVMRSARFNNFMAPLQTSLSRIYAEIAQDEDSL 432
>At1g09170 [Z] KOG0239 Kinesin (KAR3 subfamily)
Length = 1046
Score = 30.8 bits (68), Expect = 1.8
Identities = 20/77 (25%), Positives = 39/77 (49%), Gaps = 1/77 (1%)
Query: 158 LAAGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAVREGDTEKLSQKIYEYDRFNKL 217
L +GD+ S NE D S+ + E+++N +EA ++ + E+L + YE +K
Sbjct: 298 LGSGDL-GRTISGNEETLSDASYGEENVTEIVNNNMEASQDSNVEELENQDYELYAISKE 356
Query: 218 DHWKTTILLKVKNTIVE 234
K ++++ + T E
Sbjct: 357 KTEKQQLIIERQQTHTE 373
>Hs5730023 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein
Length = 463
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 160 AGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAVR--EGDTEKLSQKIY 209
AGDV+ DK+ + L SF+++R+++ + + + V+ +G+ +K + ++
Sbjct: 189 AGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH 240
>At5g24350 [S] KOG1797 Uncharacterized conserved protein
(Neuroblastoma-amplified protein)
Length = 2376
Score = 30.4 bits (67), Expect = 2.3
Identities = 12/31 (38%), Positives = 20/31 (63%)
Query: 167 DKSLNESQSLDPSFSQSREFELLSNVIEAVR 197
DK L + L+ SF++S +FE L N + ++R
Sbjct: 2325 DKQLESLEHLEDSFAESSDFETLKNTVSSLR 2355
>Hs5454124 [U] KOG2580 Mitochondrial import inner membrane translocase subunit
TIM44
Length = 452
Score = 30.0 bits (66), Expect = 3.0
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 39/187 (20%)
Query: 42 AQAAESLAKSID--IFTRRGQFRRGANFKFXXXXXXXXXXXDYPSAIANYETAG------ 93
+Q ES+ K+ID + + G +RR + + AN E G
Sbjct: 180 SQGVESVKKAIDDSVLGQTGPYRRPQRLRKRTEFAGDKFKEEKVFE-ANEEALGVVLHKD 238
Query: 94 -DWYLQDQAIALSNKSYIKCADLKALNGD----YLEATEILKKVVENSLGNKLSQWSLKE 148
WY Q + +N + + ++K + ++ A+ L V + LG S+ + E
Sbjct: 239 SKWYQQWKDFKENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSE 298
Query: 149 YLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQSR-----EFELLSNVIEAVREGDTEK 203
L +I +DP+F + R E +++ NV+EA+ G+ +
Sbjct: 299 VLTEI--------------------LRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDI 338
Query: 204 LSQKIYE 210
L YE
Sbjct: 339 LKDWCYE 345
>CE17254 [K] KOG2680 DNA helicase TIP49 TBP-interacting protein
Length = 448
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 137 LGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQSREFELLSNVIEAV 196
LG+K+ LKE ++ GDV+ DK+ L SF++S +++ + ++ V
Sbjct: 170 LGSKMVDACLKEKVMP--------GDVIQVDKASGRVTRLGRSFNRSHDYDAMGPKVKLV 221
Query: 197 R--EGDTEKLSQKIY 209
+ +G+ +K + ++
Sbjct: 222 QCPDGEIQKRRETVH 236
>At2g41720 [R] KOG4197 FOG: PPR repeat
Length = 810
Score = 30.0 bits (66), Expect = 3.0
Identities = 25/87 (28%), Positives = 38/87 (42%), Gaps = 8/87 (9%)
Query: 82 YPSAIANYETAGDWY----LQDQ----AIALSNKSYIKCADLKALNGDYLEATEILKKVV 133
Y + I + AG W L D AIA S +Y + +G++ EA E+ KK+
Sbjct: 181 YDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMT 240
Query: 134 ENSLGNKLSQWSLKEYLLKIGLCYLAA 160
+N +G L ++ K G Y A
Sbjct: 241 DNGVGPDLVTHNIVLSAYKSGRQYSKA 267
>YDR495c_2 [U] KOG2063 Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3
Length = 865
Score = 29.3 bits (64), Expect = 5.1
Identities = 31/106 (29%), Positives = 53/106 (49%), Gaps = 21/106 (19%)
Query: 106 NKSYIKCADLKA--------LNGDYLEATEILKKVVENSL--GNKLSQWSLKEYLLKIGL 155
+K Y KC +LK+ +N + E ++I K+ + L N+L+ W E LLKI
Sbjct: 693 SKYYEKCENLKSENEKDDEFINFTFDEISKIDKEHILTLLFFPNELTNWVSSEELLKI-- 750
Query: 156 CYLAAGDVVAADKSLNE-------SQSLDPSFSQSREFELLSNVIE 194
YL+ D + +K + + Q LD S S + EL++N+++
Sbjct: 751 -YLSFNDFRSVEKYIGKQNLVAVMKQYLDIS-SLNYSVELVTNLLQ 794
>YER041w [L] KOG2520 5'-3' exonuclease
Length = 759
Score = 28.9 bits (63), Expect = 6.7
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 138 GNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSLNESQSLDPSFSQS-----REFELLSNV 192
G K + SL + + +G Y + +KSL +Q DP+FS ++F L
Sbjct: 270 GKKFDRLSLLFFSVLLGADYNRGVKGLGKNKSLQLAQCEDPNFSMEFYDIFKDFNLEDLT 329
Query: 193 IEAVREGDTEKLSQKIYEY 211
E++R+ +++Y Y
Sbjct: 330 SESLRKSRYRLFQKRLYLY 348
>YBR049c [K] KOG0051 RNA polymerase I termination factor Myb superfamily
Length = 810
Score = 28.9 bits (63), Expect = 6.7
Identities = 14/39 (35%), Positives = 22/39 (55%)
Query: 107 KSYIKCADLKALNGDYLEATEILKKVVENSLGNKLSQWS 145
++Y+KC +A N +E E+LKKV+ + L Q S
Sbjct: 516 RNYVKCGTNRASNRWSVEEEELLKKVISDMLEEAQQQQS 554
>7300484 [U] KOG2580 Mitochondrial import inner membrane translocase subunit
TIM44
Length = 459
Score = 28.9 bits (63), Expect = 6.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 168 KSLNESQSLDPSFSQSR-----EFELLSNVIEAVREGDTEKLSQKIYE 210
+++ E +DPSF Q E +++ N++E++ GD E L +E
Sbjct: 305 ETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFE 352
>7297645 [R] KOG1124 FOG: TPR repeat
Length = 336
Score = 28.9 bits (63), Expect = 6.7
Identities = 22/78 (28%), Positives = 32/78 (40%), Gaps = 3/78 (3%)
Query: 111 KCADLKALNGDYLEATEILKKVVENSLGNKLSQWSLKEYLLKIGLCYLAAGDVVAADKSL 170
K L L G+Y EA +K + N W+ ++ IG+ Y A KS
Sbjct: 41 KLGHLHLLLGEYSEALSAYQKYLRFRENN---YWTNHAFIYGIGVAYFKLRCFKWAIKSF 97
Query: 171 NESQSLDPSFSQSREFEL 188
E L P+F+ + E L
Sbjct: 98 QELLYLSPNFTCANEVHL 115
>At3g05520 [Z] KOG0836 F-actin capping protein alpha subunit
Length = 308
Score = 28.5 bits (62), Expect = 8.8
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 160 AGDVVAADKS-LNESQSLDPSFSQSREFELLSNVIEAVREGDTEKLSQKIYEYDRF 214
AGDV+ + S +NE++ LDP +Q + + + VR + E+L E R+
Sbjct: 76 AGDVIVSSYSEINENEYLDPRTAQVAIVDHVKQICTKVRPANDEELPSLYIEEYRY 131
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.131 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,898,707
Number of Sequences: 60738
Number of extensions: 472722
Number of successful extensions: 1130
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 31
length of query: 240
length of database: 30,389,216
effective HSP length: 103
effective length of query: 137
effective length of database: 24,133,202
effective search space: 3306248674
effective search space used: 3306248674
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)