ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1520 good A KOG1049 RNA processing and modification Polyadenylation factor I complex, subunit FIP1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1520 535755 536639 295
(295 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR093c [A] KOG1049 Polyadenylation factor I complex subunit FIP1 155 5e-38
SPAC22G7.10 [A] KOG1049 Polyadenylation factor I complex subunit... 80 5e-15
CE09873 [A] KOG1049 Polyadenylation factor I complex subunit FIP1 76 5e-14
Hs13569874 [A] KOG1049 Polyadenylation factor I complex subunit ... 74 2e-13
7296845_1 [A] KOG1049 Polyadenylation factor I complex subunit FIP1 67 3e-11
ECU11g1390 [A] KOG1049 Polyadenylation factor I complex subunit ... 63 4e-10
At5g58040 [A] KOG1049 Polyadenylation factor I complex subunit FIP1 55 2e-07
At3g66652 [A] KOG1049 Polyadenylation factor I complex subunit FIP1 52 1e-06
>YJR093c [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 327
Score = 155 bits (393), Expect = 5e-38
Identities = 102/258 (39%), Positives = 134/258 (51%), Gaps = 56/258 (21%)
Query: 2 SSEDEDDKFLY-------------SDEEDSNVVAKQEGPALKRQK----VEETPKILAHD 44
SSEDEDDKFLY S +++++ A +KRQK VEETP D
Sbjct: 3 SSEDEDDKFLYGSDSELALPSSKRSRDDEADAGASSNPDIVKRQKFDSPVEETPATARDD 62
Query: 45 VPEGNTNEVESEASNQXXXXXXXXXXXXXXXVEIIIGTGNDTSKID-------------S 91
+ ++ S++S+ +E+II G D +++D S
Sbjct: 63 RSD---EDIYSDSSDDDSDSD----------LEVIISLGPDPTRLDAKLLDSYSTAATSS 109
Query: 92 GKSQISAITDTTP---------LGTADHAIAAVAGISDVVPVQEGSIPPEXXXXXXXTID 142
K IS TD + L T A V + +G++P +ID
Sbjct: 110 SKDVISVATDVSNTITKTSDERLITEGEANQGVTATTVKATESDGNVPK----AMTGSID 165
Query: 143 LNPDAQFDGKPIVQIDPEILKEKPWRQPGANISDYFNYGFNEQTWMEYLHRQEHLTKEYN 202
L+ + FD I IDPE+LKEKPWRQPGAN+SDYFNYGFNE TWMEYLHRQE L ++YN
Sbjct: 166 LDKEGIFDSVGITTIDPEVLKEKPWRQPGANLSDYFNYGFNEFTWMEYLHRQEKLQQDYN 225
Query: 203 PQKILMNLLALQQQGKLN 220
P++ILM LL+LQQQGKLN
Sbjct: 226 PRRILMGLLSLQQQGKLN 243
>SPAC22G7.10 [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 344
Score = 79.7 bits (195), Expect = 5e-15
Identities = 45/133 (33%), Positives = 68/133 (50%), Gaps = 12/133 (9%)
Query: 90 DSGKSQISAITDTTPLGTADHAIAAVAGISDVVP----------VQEGSIPPEXXXXXXX 139
+S S I I +T P A+ ++A + P V+ + P+
Sbjct: 42 ESDDSDIEFIIETKPGERAEPLGGSIATLGSTRPSAKPQVEKTAVEVKTTEPQDLSTAET 101
Query: 140 T--IDLNPDAQFDGKPIVQIDPEILKEKPWRQPGANISDYFNYGFNEQTWMEYLHRQEHL 197
+D++ DGK I +ID E +KPWR+PGA+ISDYFNYGF+E TW Y +Q L
Sbjct: 102 APKVDIDAVPTIDGKNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAAYCAKQTTL 161
Query: 198 TKEYNPQKILMNL 210
+++PQK + +L
Sbjct: 162 RDDFSPQKFMASL 174
>CE09873 [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 513
Score = 76.3 bits (186), Expect = 5e-14
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 34/236 (14%)
Query: 1 MSSEDEDDKFLYSDEEDSNVVAKQEGPALKRQKVEETPKILAHD---VPEGNTNEVESEA 57
M D++ ++ +++ + VA E E P ++ D +PE + + E A
Sbjct: 1 MEDFDDEPAVVHLSDDEEHAVAPVED--------SENPDVIQLDDDVIPEEDVPDDEETA 52
Query: 58 SNQXXXXXXXXXXXXXXXVEIIIGTGNDTSKI--DSGKSQISAITDTTPLGTADHAIAAV 115
N +E + +D+ I +SG++ + P D +
Sbjct: 53 EN----------------LENLENVLDDSEIIAENSGEADQEVEEEDNPFADDDDSDEDG 96
Query: 116 AGISDVVPVQEGSIPPEXXXXXXXTIDLNPDAQFDGKPIVQIDPEILKEKPWRQPGANIS 175
G+ + E P E +DL+ A + KPI +D ++++PWR+PGA+I+
Sbjct: 97 GGVQVTIRKME---PTEKPAARQGKLDLDTTATINDKPIYDLDLAQMEDRPWRKPGADIT 153
Query: 176 DYFNYGFNEQTWMEYLHRQEHLTKEYNPQKILMNLLALQQQGKLNDPGSGQPVQNT 231
DYFNYGF E+TW Y RQ+ L E+ + N AL K+ +P PV NT
Sbjct: 154 DYFNYGFTEETWNLYCERQKKLRIEFAGNQKAAN-EALFSSIKIANP-LANPVMNT 207
>Hs13569874 [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 520
Score = 73.9 bits (180), Expect = 2e-13
Identities = 52/213 (24%), Positives = 92/213 (42%), Gaps = 34/213 (15%)
Query: 5 DEDDKFLYSDEEDSNVVAKQEGPALKRQKVEETPKILAHDVPEGNTNEVESEASNQXXXX 64
DE++++LY DE + ++ A +E+ + + VP+ E E ++ +
Sbjct: 20 DEEEEWLYGDENEVERPEEENASANPPSGIED--ETAENGVPKPKVTETEDDSDSDSDDD 77
Query: 65 XXXXXXXXXXXVEIIIGTGNDTSKIDSGKSQISAITDTTPLGTADHAIAAVAGISDVVPV 124
V + IG I +G Q + T P+ + +
Sbjct: 78 EDD--------VHVTIGD------IKTGAPQYGSY-GTAPVN---------------LNI 107
Query: 125 QEGSIPPEXXXXXXXTIDLNPDAQFDGKPIVQIDPEILKEKPWRQPGANISDYFNYGFNE 184
+ G +DL+ +G P++++D + ++KPWR+PGA++SDYFNYGFNE
Sbjct: 108 KTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNE 167
Query: 185 QTWMEYLHRQEHLTK--EYNPQKILMNLLALQQ 215
TW Y +Q+ + E P N + +QQ
Sbjct: 168 DTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQ 200
>7296845_1 [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 534
Score = 67.0 bits (162), Expect = 3e-11
Identities = 37/101 (36%), Positives = 52/101 (50%), Gaps = 13/101 (12%)
Query: 142 DLNPDAQFDGKPIVQIDPEILKEKPWRQPGANISDYFNYGFNEQTWMEYLHRQEHLTKEY 201
D +G + + + L+EKPWR+PGA+I+DYFNYGFNE+TW Y RQ K +
Sbjct: 205 DFEGAGTINGVAVHEFSIDSLEEKPWRKPGADITDYFNYGFNEETWRAYCERQ----KRF 260
Query: 202 NPQKILMNLLALQQQGKLNDP---------GSGQPVQNTIQ 233
+ + L +L Q N P G G P ++IQ
Sbjct: 261 RVAESGVGLASLTQNVNQNAPIGILTDGGMGMGPPGMHSIQ 301
>ECU11g1390 [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 188
Score = 63.2 bits (152), Expect = 4e-10
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 150 DGKPIVQIDPEILKEKPWRQPGANISDYFNYGFNEQTWMEYLHRQE 195
+G+ I+ D E +KPW +PGA+I+DYFNYGFNE TW EY + Q+
Sbjct: 47 EGQNILDYDIESFTDKPWNKPGADITDYFNYGFNEMTWKEYCNMQK 92
>At5g58040 [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 1192
Score = 54.7 bits (130), Expect = 2e-07
Identities = 19/39 (48%), Positives = 29/39 (73%)
Query: 152 KPIVQIDPEILKEKPWRQPGANISDYFNYGFNEQTWMEY 190
K I ++D + +EKPWR PG ++DYFN+G NE++W +Y
Sbjct: 333 KTIFEVDIDSFEEKPWRYPGVEMTDYFNFGLNEESWKDY 371
>At3g66652 [A] KOG1049 Polyadenylation factor I complex subunit FIP1
Length = 980
Score = 52.0 bits (123), Expect = 1e-06
Identities = 17/34 (50%), Positives = 28/34 (82%)
Query: 157 IDPEILKEKPWRQPGANISDYFNYGFNEQTWMEY 190
++ ++L++KPWR PG + SD+FN+G NEQ+W +Y
Sbjct: 160 VNLDVLEKKPWRDPGTDTSDFFNFGLNEQSWKDY 193
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.307 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,567,686
Number of Sequences: 60738
Number of extensions: 610114
Number of successful extensions: 1437
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1427
Number of HSP's gapped (non-prelim): 9
length of query: 295
length of database: 30,389,216
effective HSP length: 106
effective length of query: 189
effective length of database: 23,950,988
effective search space: 4526736732
effective search space used: 4526736732
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)