ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1610 good Z KOG0679 Cytoskeleton Actin-related protein - Arp4p/Act3p
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1610 568625 567312 -438
(438 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR034w [Z] KOG0679 Actin-related protein - Arp4p/Act3p 191 1e-48
YJL081c [Z] KOG0679 Actin-related protein - Arp4p/Act3p 82 2e-15
Hs5729722 [Z] KOG0676 Actin and related proteins 64 3e-10
At1g18450 [Z] KOG0679 Actin-related protein - Arp4p/Act3p 61 4e-09
SPBP23A10.08 [Z] KOG0679 Actin-related protein - Arp4p/Act3p 60 6e-09
SPAC23D3.09 [Z] KOG0679 Actin-related protein - Arp4p/Act3p 57 5e-08
At3g27000 [Z] KOG0677 Actin-related protein Arp2/3 complex subun... 57 5e-08
ECU01g0460 [Z] KOG0676 Actin and related proteins 54 6e-07
Hs5729720 [Z] KOG0676 Actin and related proteins 52 1e-06
CE06111 [Z] KOG0677 Actin-related protein Arp2/3 complex subunit... 51 3e-06
7302793 [Z] KOG0679 Actin-related protein - Arp4p/Act3p 51 3e-06
At2g42090 [Z] KOG0676 Actin and related proteins 51 4e-06
YHR129c [Z] KOG0676 Actin and related proteins 50 5e-06
>YPR034w [Z] KOG0679 Actin-related protein - Arp4p/Act3p
Length = 477
Score = 191 bits (486), Expect = 1e-48
Identities = 146/483 (30%), Positives = 226/483 (46%), Gaps = 79/483 (16%)
Query: 5 KSVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVK-VFGKWEMIEHCDDE--SA 61
K VVI R + GFSN +LPQ I+PS Y+ +G + + +FG + MI+ ++
Sbjct: 6 KCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGD 65
Query: 62 EIYQLYDKNGLPNDWDMMDAQWQYIFQS-LGIQFEDYPVCVVLPSDLNSARRKRFMEQLL 120
E+Y L D GLP +WD ++ QW+Y++ + L + E+ P+ + +P+ N +E+
Sbjct: 66 EVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPAT-NGKPDMAILERYY 124
Query: 121 GYGF-----PMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKI 175
F P+ Q++ E + LS G+SS V+DIG SG V +IDG++ K +K
Sbjct: 125 ELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKF 184
Query: 176 GGAFLNWQICD------------QYLKQDSGKSTKIWRDATEWLPNFKNSMLQVSP---I 220
GG FL++Q+ + + + + +ST +W +A+ W+ FK++MLQVS
Sbjct: 185 GGDFLDFQVHERLAPLIKEENDMENMADEQKRSTDVWYEASTWIQQFKSTMLQVSEKDLF 244
Query: 221 ELDANY----DVAPHYQHMVSPMD-------LT----------KNFLLD--KKTLTFTNK 257
EL+ Y D+ Q + MD LT KNFL KTLT K
Sbjct: 245 ELERYYKEQADIYAKQQEQLKQMDQQLQYTALTGSPNNPLVQKKNFLFKPLNKTLTLDLK 304
Query: 258 QLYTIGELLFKPVIHVSNNANGDVEMADVNDIEKKPHPEKLIGVIGLIRACIQSLLNGVN 317
+ Y E LFKP + I K PE +G L+ ++ +N
Sbjct: 305 ECYQFAEYLFKPQL-----------------ISDKFSPEDGLG--PLMAKSVKKAGASIN 345
Query: 318 AMXXXXXXXXXXXXXXXXXXXXXXXXXXEDTNIPTHSYTSEQLQSLLLTNILVTGSTSNI 377
+M ++ + + + EQ+ SLLLTN+++TGSTS I
Sbjct: 346 SM----KANTSTNPNGLGTSHINTNVGDNNSTASSSNISPEQVYSLLLTNVIITGSTSLI 401
Query: 378 QGLEQRILNDVSVSLND--LTTVRPKILFKQTKLDRNFQSWQSATTLCRLPLRESLHAWE 435
+G+EQRI+ ++S+ LTT Q +DR Q W A T+ LP SL W
Sbjct: 402 EGMEQRIIKELSIRFPQYKLTT-----FANQVMMDRKIQGWLGALTMANLP-SWSLGKWY 455
Query: 436 SIE 438
S E
Sbjct: 456 SKE 458
>YJL081c [Z] KOG0679 Actin-related protein - Arp4p/Act3p
Length = 489
Score = 81.6 bits (200), Expect = 2e-15
Identities = 58/182 (31%), Positives = 86/182 (46%), Gaps = 8/182 (4%)
Query: 4 MKSVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVKVFGKWEM-IEHCDDESAE 62
+ +VVI G+S D PQ I+PS Y Y D + K+F + + I D E
Sbjct: 14 VSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKP 73
Query: 63 IYQLYDKNGLPNDWDMMDAQWQYIFQS-LGIQFED-YPVCVVLPSDLNSARRKRFMEQLL 120
I + NGL DWD QWQ+ Q+ L + P + P ++ RK+ +E LL
Sbjct: 74 IIE----NGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLL 129
Query: 121 -GYGFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKIGGAF 179
G F L + C + + GR + +VVDIGH V ++DG+ + + N I G F
Sbjct: 130 EGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKF 189
Query: 180 LN 181
+N
Sbjct: 190 IN 191
>Hs5729722 [Z] KOG0676 Actin and related proteins
Length = 415
Score = 64.3 bits (155), Expect = 3e-10
Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 5/184 (2%)
Query: 4 MKSVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVKVFGKWEMIEHCDDESAEI 63
+K+V+I + CG++ + P + S + +D KW ++ H +
Sbjct: 49 IKAVIIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKWTLVGHELLNTEAP 108
Query: 64 YQLYD--KNGLPNDWDMMDAQWQYIFQS-LGIQFEDYPVCVVLPSDLNSARRKRFMEQLL 120
+L + K+G+ DWD + W+YIF++ + I E++ V V P S+ R+++ E +
Sbjct: 109 LKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNREKYAELMF 168
Query: 121 G-YGFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDG-VLFKQYRKENKIGGA 178
+G P + + ++++ + S G++SG+VV+ GH V + +G VL + + GG
Sbjct: 169 ETFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGD 228
Query: 179 FLNW 182
N+
Sbjct: 229 LTNY 232
>At1g18450 [Z] KOG0679 Actin-related protein - Arp4p/Act3p
Length = 440
Score = 60.8 bits (146), Expect = 4e-09
Identities = 79/381 (20%), Positives = 139/381 (35%), Gaps = 86/381 (22%)
Query: 69 KNGLPNDWDMMDAQWQYIFQSLGIQFEDYPVCVVLPSDLNSARRKRFMEQLL--GYGFPM 126
K+G+ +DWD++D W++ F L I ++P+ + P LN+ +++ +L+ Y P
Sbjct: 96 KDGIVSDWDLVDNIWEHAFNCLMIDPTEHPMLLAEP-PLNTQQQREKAAELMFEKYKVPA 154
Query: 127 VQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKIGGAFLNWQICD 186
+ + V + + GR++ +VVD G + V DG + ++ + +GG FL D
Sbjct: 155 LFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLT----D 210
Query: 187 QYLKQDSGKSTKI----------------------WRDATEWLPNFKNSMLQVSPIELDA 224
LK K KI D TE F M+ +
Sbjct: 211 CLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSIC 270
Query: 225 NYDVAPHYQHMVSPMDLTKNFLLDKKTLTFTNKQLYTIGELLFKPVIHVSNNANGDVEMA 284
P+ S + T L D +TL + + +++F P I
Sbjct: 271 RVPDTPYDDKSYSNIPTTSYELPDGQTLEI-GADRFKVPDVMFNPSI------------- 316
Query: 285 DVNDIEKKPHPEKLIGVIGLIRACIQSLLNGVNAMXXXXXXXXXXXXXXXXXXXXXXXXX 344
++ P EK +I +R ++ +N
Sbjct: 317 ----VQTIPGMEKYAEMIPSVRGLPHMVMESINKC------------------------- 347
Query: 345 XEDTNIPTHSYTSEQLQSLLLTNILVTGSTSNIQGLEQRILNDVSVSLNDLTTVRPKILF 404
D +I Y+S IL+ G TS++Q L++R+ D+ + R K+L
Sbjct: 348 --DVDIRRELYSS----------ILLAGGTSSMQQLKERLEKDLIE--ESPHSARVKVLA 393
Query: 405 KQTKLDRNFQSWQSATTLCRL 425
+R F W + L L
Sbjct: 394 SGNTTERRFSVWIGGSILASL 414
>SPBP23A10.08 [Z] KOG0679 Actin-related protein - Arp4p/Act3p
Length = 433
Score = 60.1 bits (144), Expect = 6e-09
Identities = 92/450 (20%), Positives = 173/450 (38%), Gaps = 84/450 (18%)
Query: 4 MKSVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVKVFGKWEMIEHCDDESAEI 63
+ ++VI GFS +D+P+ ++PS Y DG ++FG E + + EI
Sbjct: 11 VSAIVIDPGSKWTRIGFSGEDIPKCVLPS-YCGEFSDGR--RLFG--EEYIYKSNPGMEI 65
Query: 64 YQLYDKNGLPNDWDMMDAQWQY-IFQSLGIQFEDYPVCVVLPSDLNSARRKRFMEQLL-G 121
+NG +WD+ W+Y + Q L ++P+ + P D R + +E +
Sbjct: 66 KNAI-RNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFES 124
Query: 122 YGFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDG-VLFKQYRKENKIGGAF- 179
P L + C + G+ + +VDIG V + DG VL K Y+ ++ G A
Sbjct: 125 LRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAIN 184
Query: 180 ---------LNWQICDQYLKQDSGKSTKIWRDAT-EWLPNFKNSMLQVSPIELDANYDVA 229
N+++ +YL + S +I + A E P +++ ++ YD
Sbjct: 185 DILAQTLRDKNFEVMPKYLVK-SKNPVEIGQPANCELRP--RDTTDSYHQFQVQRVYDEW 241
Query: 230 PHYQHMVSPMDLTKNFLLDKKTLTFTN-------KQLYTIGELLFKPVI--HVSNNANGD 280
++S + + + + F + + Y I E LF P ++ +
Sbjct: 242 KEECALISDVPFSSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVPGSDEEMNEEPSKP 301
Query: 281 VEMADVNDIEKKPH-----PEKLIGVIGLIRACIQSLLNGVNAMXXXXXXXXXXXXXXXX 335
+E + N++ ++ +++G+ L + CI
Sbjct: 302 IEQTENNEVSQQDSSVTNTSSRILGIPQLFQNCI-------------------------- 335
Query: 336 XXXXXXXXXXEDTNIPTHSYTSEQLQSLLLTNILVTGSTSNIQGLEQRILNDVSVSLNDL 395
S +++ LL N++V G TS +QG R+ N++S
Sbjct: 336 ------------------SECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELS---KLY 374
Query: 396 TTVRPKILFKQTKLDRNFQSWQSATTLCRL 425
R KI ++R++ SW + L L
Sbjct: 375 PGSRLKIHASGHVVERSYASWLGGSILSSL 404
>SPAC23D3.09 [Z] KOG0679 Actin-related protein - Arp4p/Act3p
Length = 430
Score = 57.0 bits (136), Expect = 5e-08
Identities = 44/181 (24%), Positives = 80/181 (43%), Gaps = 4/181 (2%)
Query: 6 SVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVKVFGKWEMIEHCDDESAEIYQ 65
S+VI G++ ++ P I+PS Y + D + + E+ H E+
Sbjct: 12 SLVIDPGSCWTRFGYAGEESPMTILPSYY-GVRSDVTGRNKYVVDELQIHAPIPGMEVKN 70
Query: 66 LYDKNGLPNDWDMMDAQWQY-IFQSLGIQFEDYPVCVVLPSDLNSARRKRFMEQLLGY-G 123
NG+ DW+ W+ + + L + +Y + + PS + R++ ME
Sbjct: 71 -GKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLH 129
Query: 124 FPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKIGGAFLNWQ 183
P L +AVC + +S+ ++VDIG V V+DG++ ++ + + G FLN
Sbjct: 130 VPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNAN 189
Query: 184 I 184
I
Sbjct: 190 I 190
>At3g27000 [Z] KOG0677 Actin-related protein Arp2/3 complex subunit Arp2
Length = 389
Score = 57.0 bits (136), Expect = 5e-08
Identities = 68/299 (22%), Positives = 120/299 (39%), Gaps = 28/299 (9%)
Query: 5 KSVVIQISQTRVI-CGFSNQDLPQLIVPS----QYLAYK-----RDGSDVKVFGKWEMIE 54
K+VV+ + T + CGF+ ++ P + P L Y+ + D+ V +
Sbjct: 4 KNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELR 63
Query: 55 HCDDESAEIYQLYDKNGLPNDWDMMDAQWQYIFQS-LGIQFEDYPVCVVLPSDLNSARRK 113
H D + ++ NG+ +WD M+ W + F + L I D + + P S R+
Sbjct: 64 HQLDINYPVH-----NGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNRE 118
Query: 114 RFMEQLLG-YGFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKE 172
+ +E + Y F V + +AV +QG +G+V+D G V V+DG F K
Sbjct: 119 KMIETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKR 178
Query: 173 NKIGGAFLNWQICDQYLKQDSGKSTKIWRDATEWLPNFKNSMLQVSPIELDANYDVAPHY 232
+ G + + D L G + D E + K + +S YD
Sbjct: 179 MNVAGRHITAYLVD--LLSRRGYAMNKTAD-FETVREIKEKLCYIS-------YDYKRES 228
Query: 233 QHMVSPMDLTKNFLLDKKTLTFTNKQLYTIGELLFKP-VIHVSNNANGDVEMADVNDIE 290
Q + L KN+ L + + + E LF P +I V + D+ + +++
Sbjct: 229 QLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMD 287
>ECU01g0460 [Z] KOG0676 Actin and related proteins
Length = 407
Score = 53.5 bits (127), Expect = 6e-07
Identities = 73/329 (22%), Positives = 140/329 (42%), Gaps = 26/329 (7%)
Query: 4 MKSVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVKVFGKWEMI-EHCDDESAE 62
++++VI I V GF+ D P+ + PS K G V + K + + +
Sbjct: 37 VQALVIDIGSGVVKSGFAGDDAPRAVFPSIVGFPKHKGVMVGMGQKDAYVGDEAQTKRGI 96
Query: 63 IYQLYD-KNGLPNDWDMMDAQWQYIF-QSLGIQFEDYPVCVVLPSDLNSARRKRFMEQLL 120
++ Y ++G+ N+WD M+ W + F L + E++PV ++ + LN + + Q++
Sbjct: 97 LHIKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPV-LLTEAPLNPKANREKITQIM 155
Query: 121 --GYGFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKIGGA 178
+ P + +AV + + GR++GIV D G V + +G + G
Sbjct: 156 FETFNVPSFYISIQAVLSLYASGRTTGIVFDSGDGVSHVVPIYEGYSLPYAINRIDLAGR 215
Query: 179 FLNWQICDQYLKQDSGKSTKIWRDATEWLPNFKNSMLQVSPIELDANYDV-APHYQHMVS 237
L + Q + +SG S + E + + K + VS NY+ + +H+ S
Sbjct: 216 DLTDYL--QLILTESGNSFTTTAE-REIVRDIKEKLCYVS-----LNYEEDMRNTEHLAS 267
Query: 238 PMDLTKNFLLDKKTLTFTNKQLYTIGELLFKPVIH------VSNNANGDVEMADVNDIEK 291
+TK + + + + + ELLF+P + + N + DV DI K
Sbjct: 268 ---ITKTYEMPDGQVISIGNERFRAPELLFQPKLRGLELKGIHQNIYDSIMKCDV-DIRK 323
Query: 292 KPHPE-KLIGVIGLIRACIQSLLNGVNAM 319
+ + L G + + +LN + A+
Sbjct: 324 ELYGNIVLSGGTTMYPGLAERILNEIKAL 352
>Hs5729720 [Z] KOG0676 Actin and related proteins
Length = 435
Score = 52.4 bits (124), Expect = 1e-06
Identities = 40/165 (24%), Positives = 76/165 (45%), Gaps = 8/165 (4%)
Query: 5 KSVVIQISQTRVICGFSNQDLP----QLIVPSQYLAYKRDGSDVKVFGKWEMIEHCDDES 60
K+VV+ + CGF+ P V Y+ + G + K + + + +
Sbjct: 70 KAVVVDLGTGYCKCGFAGLPRPTHKISTTVGKPYMETAKTGDNRKETFVGQELNNTNVHL 129
Query: 61 AEIYQLYDKNGLPNDWDMMDAQWQYIF-QSLGIQFEDYPVCVVLPSDLNSARRKRFMEQL 119
+ L ++G+ DWD + W+Y+F Q + I E++ V V P R+++ E L
Sbjct: 130 KLVNPL--RHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEML 187
Query: 120 L-GYGFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDG 163
+ P + + ++ + S GR+SG+VV++GH V + +G
Sbjct: 188 FEAFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEG 232
>CE06111 [Z] KOG0677 Actin-related protein Arp2/3 complex subunit Arp2
Length = 395
Score = 51.2 bits (121), Expect = 3e-06
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 11/182 (6%)
Query: 5 KSVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVKVFGKWEMIE-HCDDESAEI 63
K +V+ V CG++ + P I PS + + + G E+ + +E +++
Sbjct: 7 KVIVVDNGTGFVKCGYAGTNFPAHIFPS--MVGRPIVRSTQRVGNIEIKDLMVGEECSQL 64
Query: 64 YQLYD-----KNGLPNDWDMMDAQWQYIFQSLGIQFEDYPVCVVL---PSDLNSARRKRF 115
Q+ D NG+ +WD M W + F + + ++L P + NS R K F
Sbjct: 65 RQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMF 124
Query: 116 MEQLLGYGFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKI 175
YGF + + +AV +QG +G+VVD G + V +G + I
Sbjct: 125 QVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDI 184
Query: 176 GG 177
G
Sbjct: 185 AG 186
>7302793 [Z] KOG0679 Actin-related protein - Arp4p/Act3p
Length = 425
Score = 51.2 bits (121), Expect = 3e-06
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 65 QLYDKNGLPNDWDMMDAQWQYIFQSLGIQFEDYPVCVVLPSDLNSARRKRFMEQLL--GY 122
Q Y K+G+ ++WD+ + Y + ++ +Y + + N + + +L+ Y
Sbjct: 90 QTYMKDGMIDNWDLFEKVIDYAYANVIQSEPEYHPVLFSEASWNVRNNREKLTELMFEKY 149
Query: 123 GFPMVQLLNEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKIGGAFLNW 182
P L+ AV S GR++ +VVD G + V +G + Q ++ +GG FL+
Sbjct: 150 NVPAFFLVKNAVLAAFSSGRATALVVDSGATHTSAVPVHEGYVLSQAVVKSPLGGDFLSR 209
Query: 183 QICDQYLKQDSGKSTKIWRDATE 205
Q C Q+L++ + +++ A++
Sbjct: 210 Q-CRQHLEKHGIDLSPVYKIASK 231
>At2g42090 [Z] KOG0676 Actin and related proteins
Length = 366
Score = 50.8 bits (120), Expect = 4e-06
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 4 MKSVVIQISQTRVICGFSNQDLPQLIVPSQYLAYKRDGSDVKVFGKWEMIEHCDDESAEI 63
MK +V V GF+ + P+++ P + RDG + + + +I
Sbjct: 1 MKPIVCDKGHGMVQAGFAGDEAPKVVFPC-VVGRPRDGLNPNE----SYVGEEGHANRDI 55
Query: 64 YQLYD--KNGLPNDWDMMDAQWQYIF-QSLGIQFEDYPVCVV-LPSDLNSARRKRFMEQL 119
L D ++G+ N+WD M+ W Y F L + E++PV + P + + R K
Sbjct: 56 LTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMTQIMF 115
Query: 120 LGYGFPMVQLLNEAVCNTLSQGRSSGIVVDIG 151
+ P + + ++V S GR++G+V+D+G
Sbjct: 116 ESFDVPAMYVSMQSVLYLYSSGRTTGVVLDLG 147
>YHR129c [Z] KOG0676 Actin and related proteins
Length = 384
Score = 50.4 bits (119), Expect = 5e-06
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 69 KNGLPNDWDMMDAQWQYIFQSLGIQFE---DYPVCVVLPSDLNSARRKRFMEQLLGYGFP 125
K+G+ DWD M+ W Y+ + +Q + ++P+ ++ + +N + + M Q+L F
Sbjct: 79 KHGVVEDWDSMELIWSYVLNEV-LQLQNIGEHPL-LITEAPMNPLKNREQMAQVLFETFD 136
Query: 126 MVQLL--NEAVCNTLSQGRSSGIVVDIGHSGVKVDVVIDGVLFKQYRKENKIGGAFLNWQ 183
+ L N AV + + GR++G VVD G + DG IGGA + Q
Sbjct: 137 VSALYVSNPAVLSLYASGRTTGCVVDCGEGYCSTVPIYDGFALPASMMRMDIGGADITEQ 196
Query: 184 ICDQYLKQDSGKS 196
+ Q L++ +G S
Sbjct: 197 LQFQ-LRKSAGVS 208
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,357,603
Number of Sequences: 60738
Number of extensions: 1068467
Number of successful extensions: 2492
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2466
Number of HSP's gapped (non-prelim): 20
length of query: 438
length of database: 30,389,216
effective HSP length: 109
effective length of query: 329
effective length of database: 23,768,774
effective search space: 7819926646
effective search space used: 7819926646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)