ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV1710.1    suspect: Pn  YU    KOG4719   Intracellular trafficking, secretion, and vesicular transport  Nuclear pore complex protein
r_klactV1710.1    suspect: Pn  YU    KOG4719   Nuclear structure                                              Nuclear pore complex protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV1710.1 604824 604300 -175 
         (175 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOR098c [YU] KOG4719 Nuclear pore complex protein                      28   4.9  
7291151 [TU] KOG0084 GTPase Rab1/YPT1 small G protein superfamil...    28   4.9  
CE09990 [O] KOG1695 Glutathione S-transferase                          28   8.4  

>YOR098c [YU] KOG4719 Nuclear pore complex protein
          Length = 1076

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (52%)

Query: 129 TIGNGNNVGWNISGNITTLSFNDWQSGQRTTT 160
           + G  N  G N S N T+ SFN   +G  TTT
Sbjct: 801 SFGTANTNGTNASANSTSFSFNAPATGNGTTT 832


>7291151 [TU] KOG0084 GTPase Rab1/YPT1 small G protein superfamily and
           related GTP-binding proteins
          Length = 195

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/35 (34%), Positives = 21/35 (59%)

Query: 5   QVSQELGFEFGDSGNINVIQVTVDTGVNQWNLFFS 39
           QVS E GF +   G +   +V+  +G+N +++F S
Sbjct: 129 QVSMEQGFNYAHRGALGFEEVSAKSGMNVYDIFSS 163


>CE09990 [O] KOG1695 Glutathione S-transferase
          Length = 210

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/65 (27%), Positives = 36/65 (54%), Gaps = 1/65 (1%)

Query: 3   SLQVSQELGFEFGDSGNINVIQVTVDTGVNQWNLFFSSQWRVLVLLQQLGQSFTSSQGLL 62
           S  +++ L  +FG +G     +  VD  V+Q+  FF +++R LV+ +++G+S    + L 
Sbjct: 66  SAAINRYLARKFGFAGKTPEEEAWVDAVVDQFKDFF-AEFRKLVIAKRVGKSAEELEKLT 124

Query: 63  GRSIQ 67
              I+
Sbjct: 125 AEVIK 129


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,495,381
Number of Sequences: 60738
Number of extensions: 279978
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 30,389,216
effective HSP length: 99
effective length of query: 76
effective length of database: 24,376,154
effective search space: 1852587704
effective search space used: 1852587704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)