ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV1711.1    suspect: Pn  K     KOG1831   Transcription                                                  Negative regulator of transcription

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV1711.1 603533 603408 -42  
         (42 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

7303881 [K] KOG1831 Negative regulator of transcription                28   1.9  
Hs20556995 [WV] KOG1216 von Willebrand factor and related coagul...    27   5.4  
CE14096 [A] KOG1588 RNA-binding protein Sam68 and related KH dom...    27   7.1  

>7303881 [K] KOG1831 Negative regulator of transcription
          Length = 1766

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 4    PKTLAIPSPTAKTLPVSFKLDSSETPLILSSKI 36
            P+ + +P P    L V    DSS  P +LSS I
Sbjct: 1516 PRNMRLPDPFTPNLKVDMLSDSSNAPKVLSSYI 1548


>Hs20556995 [WV] KOG1216 von Willebrand factor and related coagulation
          proteins
          Length = 880

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 9  IPSPTAKTLPVSFKLDSSETPLILSSKIEETSV 41
          +P+ TA T+P S  + ++ TP +L S +   SV
Sbjct: 4  MPTATASTVPSSSTVGTTRTPAVLPSSLPTFSV 36


>CE14096 [A] KOG1588 RNA-binding protein Sam68 and related KH domain
           proteins
          Length = 463

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 1   MFKPKTLAIPSPTAKTLPVSFKLDSSETPLILSSKIEETSV 41
           MF PK+ +I SPT    P+S+   S +  L   +  E   V
Sbjct: 103 MFNPKSRSIFSPTLPATPMSYGKSSMDKSLFSPTATEPIEV 143


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.308    0.126    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,246,459
Number of Sequences: 60738
Number of extensions: 52572
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 3
length of query: 42
length of database: 30,389,216
effective HSP length: 18
effective length of query: 24
effective length of database: 29,295,932
effective search space: 703102368
effective search space used: 703102368
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)