ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1715 good DKL KOG2496 Cell cycle control, cell division, chromosome partitioning Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit
r_klactV1715 good DKL KOG2496 Replication, recombination and repair Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit
r_klactV1715 good DKL KOG2496 Transcription Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1715 605566 606759 398
(398 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR025c [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase... 379 e-105
SPBP16F5.02 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polyme... 157 3e-38
Hs4502623 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymera... 104 2e-22
7296498 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase... 100 3e-21
7299935 [K] KOG0794 CDK8 kinase-activating protein cyclin C 74 5e-13
CE25333 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase... 70 7e-12
YNL025c [K] KOG0794 CDK8 kinase-activating protein cyclin C 69 1e-11
At5g27620 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymera... 68 2e-11
Hs4885119 [K] KOG0794 CDK8 kinase-activating protein cyclin C 68 3e-11
At5g48640 [K] KOG0794 CDK8 kinase-activating protein cyclin C 60 7e-09
At5g48630 [K] KOG0794 CDK8 kinase-activating protein cyclin C 58 2e-08
>YPR025c [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH/TFIIK cyclin H subunit
Length = 393
Score = 379 bits (973), Expect = e-105
Identities = 192/351 (54%), Positives = 250/351 (70%), Gaps = 11/351 (3%)
Query: 45 KKAESKRITDDDLYRHSSQYRLWSFTKEQLESRRRALNAKVVDKVNEKLQDIISKHNDLS 104
K KRI+DDDLYRHSSQYR+WS+TK+QL+ +R NA+ + + E L HN L+
Sbjct: 36 KPPNYKRISDDDLYRHSSQYRMWSYTKDQLQEKRVDTNARAIAYIEENLLKFREAHN-LT 94
Query: 105 QEELNAINEKAVPVTMEEELKFVNFFAKKVQSFCHSLNLPTEVCATAISFFRRFFLVNST 164
+EE+ + KA+P+TMEEEL VNF+AKKVQ LNLPTEV ATAISFFRRFFL NS
Sbjct: 95 EEEIKVLEAKAIPLTMEEELDLVNFYAKKVQVIAQHLNLPTEVVATAISFFRRFFLENSV 154
Query: 165 MEIHPKHILLASIFLACKSENYFIGIEAFAKKTKSQPTTILKYEFDVLESLQFTLLNHHP 224
M+I PK I+ +IFLACKSENYFI +++FA+K KS ++LK+EF +LESL+F+LLNHHP
Sbjct: 155 MQIDPKSIVHTTIFLACKSENYFISVDSFAQKAKSTRDSVLKFEFKLLESLKFSLLNHHP 214
Query: 225 YRPLHGFFLDIQYILHGKVDLNYMGQIYTNCKRRITETLLTDVVYHYTPPQITLACLLID 284
Y+PLHGFFLDIQ +L+GKVDLNYMGQIY CK+RIT LLTDVVY YTPPQITLA LLI+
Sbjct: 215 YKPLHGFFLDIQNVLYGKVDLNYMGQIYDRCKKRITAALLTDVVYFYTPPQITLATLLIE 274
Query: 285 DEALTLKYLEVKFGS--------PPEEQKDSETEGLKTEETPSDTKLPSNLKLQT--LTA 334
DEAL +YLE KF S P E+++ + + TE+ + + + L
Sbjct: 275 DEALVTRYLETKFPSREGSQESVPGNEKEEPQNDASTTEKNKEKSTESEEYSIDSAKLLT 334
Query: 335 LIRECQAMILNVETLSKEEATKIDAKLHYCQNPMLLVDRMRRQKQQRDSSA 385
+IREC+++I + + S EEA KI AK +YCQNP L+ +++R+ D+S+
Sbjct: 335 IIRECKSIIEDCKPPSTEEAKKIAAKNYYCQNPSTLIQKLKRKLNGEDTSS 385
>SPBP16F5.02 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH/TFIIK cyclin H subunit
Length = 322
Score = 157 bits (397), Expect = 3e-38
Identities = 102/314 (32%), Positives = 165/314 (52%), Gaps = 36/314 (11%)
Query: 56 DLYRHSSQYRLWSFTKEQLESRRRALNAKVVDKVNEKLQDIISKHNDLSQEELNAINEKA 115
D +R S+ YR W FT+E L R +N K + V E++ + +S N + E+
Sbjct: 4 DKFRDSTHYRDWIFTEEDLSKTRAKVNEKFTNIVRERMLEELSLQNKEASLEV-----LP 58
Query: 116 VPVTMEEELKFVNFFAKKVQSFCHSLNLPTEVCATAISFFRRFFLVNSTMEIHPKHILLA 175
+T+EEEL+ VN+++ ++ + +L+LPT + +TAI FF+RF+L+NS ME PK I
Sbjct: 59 PTLTVEEELELVNYYSFQLNALSSALSLPTHIRSTAILFFKRFYLINSVMEYSPKIISFT 118
Query: 176 SIFLACKSENYFIGIEAFAKK-TKSQPTTILKYEFDVLESLQFTLLNHHPYRPLHGFFLD 234
S+FLA K +++I IE F K K+ P +L+YEF+V +SL++ L P+RPL GF LD
Sbjct: 119 SLFLATKCNDHYISIEQFCKNMPKTTPEEVLEYEFNVCQSLKWDLYVWLPFRPLQGFLLD 178
Query: 235 IQYILHGKVDLNYMGQIYTNCKRRITETLLTDVVYHYTPPQITLACLLIDDEALTLKYLE 294
Q +L KV + + + K+ + ETL +D+ + ++P I L + + + L+Y+E
Sbjct: 179 CQTVL-PKVAVEKFYECHDLSKKFLIETLHSDIYFLHSPSIIALGAIYHTNPTICLQYIE 237
Query: 295 VKFGSPPEEQKDSETEGLKTEETPSDTKLPSNLKLQTLTALIRECQAMILNVETLSKEEA 354
K PE Q P + +NLK + K++A
Sbjct: 238 AK--KIPELQ-------------PLIISISANLK--------------ATKKFKIEKKKA 268
Query: 355 TKIDAKLHYCQNPM 368
KL++C NP+
Sbjct: 269 QDYGRKLYFCMNPL 282
>Hs4502623 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH/TFIIK cyclin H subunit
Length = 323
Score = 104 bits (260), Expect = 2e-22
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 56/337 (16%)
Query: 57 LYRHSSQYRLWSFTKEQLESRRRALNAKVVDKVNEKLQDIISKHNDLSQEELNAINEKAV 116
+Y +SSQ R W+F+ E+ +R RA N K + + + +
Sbjct: 1 MYHNSSQKRHWTFSSEEQLARLRA-------DANRKFRCKAVANGKVLPND--------- 44
Query: 117 PVTME--EELKFVNFFAKKVQSFCHSLN--LPTEVCATAISFFRRFFLVNSTMEIHPKHI 172
PV +E EE+ ++ K++ FC +P V TA +F+RF+L NS ME HP+ I
Sbjct: 45 PVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRII 104
Query: 173 LLASIFLACKSENYFIGIEAFAKKTKSQP-------TTILKYEFDVLESLQFTLLNHHPY 225
+L FLACK + + + F + P IL+YE +++ L F L+ H+PY
Sbjct: 105 MLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPY 164
Query: 226 RPLHGFFLDIQY---ILHGKVDLNYMGQIYTNCKRRITETLLTDVVYHYTPPQITLACLL 282
RP GF +D++ IL L + N LTD YTP QI L +L
Sbjct: 165 RPFEGFLIDLKTRYPILENPEILRKTADDFLN------RIALTDAYLLYTPSQIALTAIL 218
Query: 283 IDDEALTLKYLEVKFGSPPEEQKDSETEGLKTEETPSDTKLPSNLKLQTLTALIRECQAM 342
+ E SE+ LK T L L +++ + +
Sbjct: 219 SSASRAGITM----------ESYLSESLMLKENRT----------CLSQLLDIMKSMRNL 258
Query: 343 ILNVETLSKEEATKIDAKLHYCQNPMLLVDRMRRQKQ 379
+ E EE + KL C + L ++ + ++++
Sbjct: 259 VKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRK 295
>7296498 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH/TFIIK cyclin H subunit
Length = 324
Score = 100 bits (250), Expect = 3e-21
Identities = 90/339 (26%), Positives = 144/339 (41%), Gaps = 53/339 (15%)
Query: 57 LYRHSSQYRLWSFTKE-QLESRRRALNAKVVDKVNEKLQDIISKHNDLSQEELNAINEKA 115
+Y SSQ R W+F E QL R N+K ++ E+ Q DL++ L + E+
Sbjct: 1 MYPVSSQKRSWTFANEGQLMEFRVEQNSKYIESHEEEAQG-----RDLNEHFLTSAEERL 55
Query: 116 VPVTMEEELKFVNFFAKKVQSFCHSLN--LPTEVCATAISFFRRFFLVNSTMEIHPKHIL 173
+ LK + + FC +P V TA +F+RF+L NS M+ HPK IL
Sbjct: 56 L-------LKQYEIY---LFDFCRRFEPTMPKCVVGTAFHYFKRFYLNNSPMDYHPKEIL 105
Query: 174 LASIFLACKSENYFIGIEAFAKKTKSQ----PTTILKYEFDVLESLQFTLLNHHPYRPLH 229
+F+ACK E + + I F K +L E ++ L + L H+P+RP+
Sbjct: 106 ATCVFVACKVEEFNVSINQFVNNIKGDRNKATDIVLSNELLLIGQLNYYLTIHNPFRPIE 165
Query: 230 GFFLDIQYILHGKVDLNYMGQIYTNCKRRITETLLTDVVYHYTPPQITLACLLIDDEALT 289
GF +DI+ + ++ ++ + I T +D +TP QI LA +L
Sbjct: 166 GFLIDIK----TRSNMQNPDRLRPHIDSFIDSTYYSDACLLHTPSQIALAAVL------- 214
Query: 290 LKYLEVKFGSPPEEQKDSETEGLKTEETPSDTKLPSNLKLQTLTALIRECQAMILNVETL 349
S +E DS L + + KL L +R+ + M+ +
Sbjct: 215 ------HAASREQENLDSYVTDL--------LFVSAREKLPGLIDAVRKIRIMVKQYQQP 260
Query: 350 SKEEATKIDAKLHYCQNPM------LLVDRMRRQKQQRD 382
+E+ I+ KL C+N L +R+RR D
Sbjct: 261 DREKVKAIEKKLDKCRNQANNPDSELYKERLRRLYTDED 299
>7299935 [K] KOG0794 CDK8 kinase-activating protein cyclin C
Length = 267
Score = 73.6 bits (179), Expect = 5e-13
Identities = 65/196 (33%), Positives = 87/196 (44%), Gaps = 34/196 (17%)
Query: 105 QEELNAINEKAVPVTMEEELKFVNFFAKKVQSFCHSLNLPTEVCATAISFFRRFFLVNST 164
Q +L A+NE +E K FFA +Q L L +V ATA +F+RF+ NS
Sbjct: 26 QHDLLALNE-------DEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSL 78
Query: 165 MEIHPKHILLASIFLACKSENY-------FIGIEAFAKKTK----------SQPTTILKY 207
I P + I LA K E + I I A KTK + IL+
Sbjct: 79 KNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILEC 138
Query: 208 EFDVLESLQFTLLNHHPYRPLHGFFLDIQYILHGKVDLNYMGQIYTNCKRRITETLLTDV 267
EF +LE+L L+ + PYRPL L D+ Q+ T R + ++L TDV
Sbjct: 139 EFYLLENLDCCLIVYQPYRPL----------LQLVQDMGQEDQLLTLSWRIVNDSLRTDV 188
Query: 268 VYHYTPPQITLACLLI 283
Y P QI +ACL I
Sbjct: 189 CLLYPPYQIAIACLQI 204
>CE25333 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH/TFIIK cyclin H subunit
Length = 296
Score = 69.7 bits (169), Expect = 7e-12
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 11/172 (6%)
Query: 118 VTMEEELKFVNFFAKKVQSFCHSL--NLPTEVCATAISFFRRFFLVNSTMEIHPKHILLA 175
VT EEEL+ F ++ V TA++FF+R FLV + + +++A
Sbjct: 10 VTPEEELRMQRSIEDAALKFADKFRPHIWPSVKWTALAFFKRAFLVWVPSDTSIRMVMMA 69
Query: 176 SIFLACKSENYFIGIEAFAK-----KTKSQPTTILKYEFDVLESLQFTLLNHHPYRPLHG 230
+LA K + ++I IE F K + + ILK E ++++ L + L H PYRP G
Sbjct: 70 CFYLAMKIDEFYITIEDFVKNMNVGEPRQNAERILKLEPELMKILDYNLTVHCPYRPYEG 129
Query: 231 FFLDIQYILHGKVDLNY-MGQIYTNCKRRITETLLTDVVYHYTPPQITLACL 281
+D++ + + LN+ + I + R L TDV+ Y P QI LA +
Sbjct: 130 HLMDMKTRM---LLLNFDLESIRRDSMRFFQNALQTDVLLLYPPSQIALAAI 178
>YNL025c [K] KOG0794 CDK8 kinase-activating protein cyclin C
Length = 323
Score = 68.9 bits (167), Expect = 1e-11
Identities = 60/239 (25%), Positives = 98/239 (40%), Gaps = 26/239 (10%)
Query: 61 SSQYRLWSFTKEQLESRRRALNAKVVDKVNEKLQDII-SKHNDLSQEELNAINEKAVPVT 119
S+Q W +TK L R+ L + L ++ SK N + Q K +P+T
Sbjct: 8 STQRHHWQYTKASLAKERQKLWLLECQLFPQGLNIVMDSKQNGIEQSIT-----KNIPIT 62
Query: 120 MEE-------ELKFVNFFAKKVQSFCHSLNLPTEVCATAISFFRRFFLVNSTMEIHPKHI 172
+ L+ +F + LN+ ATA + RF + S EI+ +
Sbjct: 63 HRDLHYDKDYNLRIYCYFL--IMKLGRRLNIRQYALATAHIYLSRFLIKASVREINLYML 120
Query: 173 LLASIFLACKSENYFIGIEAFAKKTKS--------QPTTILKYEFDVLESLQFTLLNHHP 224
+ ++LACK E I + ++ PT + ++EF +LE L+ L+ HHP
Sbjct: 121 VTTCVYLACKVEECPQYIRTLVSEARTLWPEFIPPDPTKVTEFEFYLLEELESYLIVHHP 180
Query: 225 YRPLHGFFLDIQYILHGKVDLNYMGQIYTNCKRRITETLLTDVVYHYTPPQITLACLLI 283
Y+ L +Q + + NC I ++ + DV Y P I +ACL I
Sbjct: 181 YQSLKQI---VQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFI 236
>At5g27620 [DKL] KOG2496 Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH/TFIIK cyclin H subunit
Length = 300
Score = 68.2 bits (165), Expect = 2e-11
Identities = 66/296 (22%), Positives = 119/296 (39%), Gaps = 50/296 (16%)
Query: 58 YRHSSQYRLWSFTKEQLESRRRALNAKVVDKVNE----KLQDIISKHNDLSQEELNA--- 110
++ S+Q W FT ++L R +A N + V + + +++ S ++++ +
Sbjct: 4 FQTSTQRAKWIFTPQKLAERYKAANQRAVQMLEKCGTTQVEVDASGSLTYPKDKVGSGDQ 63
Query: 111 INEKAVPVTMEEELKFVNFFAKKVQSFCHSLNLPTEVCATAISFFRRFFLVNSTMEIHPK 170
++K P++ +EE F+ KVQ C + P ++
Sbjct: 64 ADKKLKPLSADEERFMRAFYEAKVQEVCSAFAFPHKI----------------------- 100
Query: 171 HILLASIFLACKSENYFIGIEAFAKKTKSQPTTILKYEFDVLESLQFTLLNHHPYRPLHG 230
EN+ + E K ILKYE VL+SL+F L+ + PYR + G
Sbjct: 101 ------------QENH-VSAEEIGKGINQDHRIILKYEMAVLQSLEFDLIVYAPYRAIEG 147
Query: 231 FFLDIQYILHGKVD-LNYMGQIYTNCKRRITETLLTDVVYHYTPPQITLACLLIDDEALT 289
F +++ L + D + + + + +LTD + P Q+ LA L I + L
Sbjct: 148 FVNNMEEFLQARDDEIQKLESLLKGATAEADKVMLTDAPLLFPPGQLALASLRIANGVLG 207
Query: 290 L----KYLEVKFGSPPEEQKDSETEGL--KTEETPSDTKLPSNLKLQTLTALIREC 339
+ +YLE P E SE L E + K PS ++ + ++ C
Sbjct: 208 VIDFDRYLENIVSQPNSEHTTSELTKLLDNIEYLVKNYKCPSEKDMKHINRKLKSC 263
>Hs4885119 [K] KOG0794 CDK8 kinase-activating protein cyclin C
Length = 303
Score = 67.8 bits (164), Expect = 3e-11
Identities = 57/197 (28%), Positives = 86/197 (42%), Gaps = 28/197 (14%)
Query: 103 LSQEELNAINEKAVPVTMEEEL-KFVNFFAKKVQSFCHSLNLPTEVCATAISFFRRFFLV 161
L +++L +K + EEE K FF +Q+ L L +V ATA +F+RF+
Sbjct: 36 LDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYAR 95
Query: 162 NSTMEIHPKHILLASIFLACKSENYFIGIE-----------------AFAKKTKSQPTTI 204
S I P + +FLA K E + + AF K+ + I
Sbjct: 96 YSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHI 155
Query: 205 LKYEFDVLESLQFTLLNHHPYRPLHGFFLDIQYILHGKVDLNYMGQIYTNCKRRITETLL 264
L+ EF +LE + L+ +HPYRPL +QY+ D+ + R + +T
Sbjct: 156 LECEFYLLELMDCCLIVYHPYRPL------LQYV----QDMGQEDMLLPLAWRIVNDTYR 205
Query: 265 TDVVYHYTPPQITLACL 281
TD+ Y P I LACL
Sbjct: 206 TDLCLLYPPFMIALACL 222
>At5g48640 [K] KOG0794 CDK8 kinase-activating protein cyclin C
Length = 259
Score = 59.7 bits (143), Expect = 7e-09
Identities = 51/201 (25%), Positives = 91/201 (44%), Gaps = 32/201 (15%)
Query: 103 LSQEELNAIN----EKAVPVTMEEELKFVNF-FAKKVQSFCHSLNLPTEVCATAISFFRR 157
L EE++ ++ E+ + + ++ K + F + + + + V ATAI++ RR
Sbjct: 15 LDPEEVDVVHDLDKERGISI---DDFKLIKFHMSNHIMKLAQHIKVRQRVVATAITYMRR 71
Query: 158 FFLVNSTMEIHPKHILLASIFLACKSENYFI---GIEAFAKK------------TKSQPT 202
++ S +E P+ + L ++LA K+E + + + K+ K +
Sbjct: 72 VYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFYIKRLCNIFFFYPDEYNKYELK 131
Query: 203 TILKYEFDVLESLQFTLLNHHPYRPLHGFFLDIQYILHGKVDLNYMGQIYTNCKRRITET 262
IL E VLE+L + L+ HPYR L F D D+N M QI + +T
Sbjct: 132 DILGMEMKVLEALDYYLVVFHPYRSLSEFLQDA-----ALNDVN-MNQITWGI---VNDT 182
Query: 263 LLTDVVYHYTPPQITLACLLI 283
D++ + P +I LAC+ I
Sbjct: 183 YKMDLILVHPPYRIALACIYI 203
>At5g48630 [K] KOG0794 CDK8 kinase-activating protein cyclin C
Length = 253
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 123 ELKFVNFFAKKVQSFCHSLNLPTEVCATAISFFRRFFLVNSTMEIHPKHILLASIFLACK 182
+L N+ +K Q + + V ATA+++ RR + S E P+ + ++LACK
Sbjct: 41 KLHMSNYISKLAQH----IKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACK 96
Query: 183 SENYFIGIEAFA---------KKTKSQPTTILKYEFDVLESLQFTLLNHHPYRPLHGFFL 233
+E + + +K + + IL+ E VLE+L F L+ HPYR L F
Sbjct: 97 AEESVVHAKLLVFYMKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQ 156
Query: 234 DIQYILHGKVDLNYMGQIYTNCKRRITETLLTDVVYHYTPPQITLACLLI 283
D L + + +T D++ + P ITLAC+ I
Sbjct: 157 DSGINDTSMTHLTW---------GLVNDTYRMDLILIHPPFLITLACIYI 197
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,987,549
Number of Sequences: 60738
Number of extensions: 902436
Number of successful extensions: 3428
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3401
Number of HSP's gapped (non-prelim): 12
length of query: 398
length of database: 30,389,216
effective HSP length: 108
effective length of query: 290
effective length of database: 23,829,512
effective search space: 6910558480
effective search space used: 6910558480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)