ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1728.1 suspect: LH T KOG1187 Signal transduction mechanisms Serine/threonine protein kinase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1728.1 611650 611997 116
(116 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
At5g13290 [T] KOG1187 Serine/threonine protein kinase 27 3.5
>At5g13290 [T] KOG1187 Serine/threonine protein kinase
Length = 401
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 39 STNVVSNTLLYVLFFFARVSGSSRAIGRPVK 69
S+N +S LL+ L FF+R S S+ R VK
Sbjct: 12 SSNTISLLLLFFLVFFSRTSTSTSCRRRTVK 42
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.325 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,095,145
Number of Sequences: 60738
Number of extensions: 101020
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 1
length of query: 116
length of database: 30,389,216
effective HSP length: 92
effective length of query: 24
effective length of database: 24,801,320
effective search space: 595231680
effective search space used: 595231680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)