ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1852 good O KOG3281 Posttranslational modification, protein turnover, chaperones Mitochondrial F1-ATPase assembly protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1852 654433 653480 -318
(318 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL315c [O] KOG3281 Mitochondrial F1-ATPase assembly protein 339 4e-93
SPAC3A12.12 [O] KOG3281 Mitochondrial F1-ATPase assembly protein 115 8e-26
7300175 [O] KOG3281 Mitochondrial F1-ATPase assembly protein 64 2e-10
Hs16159302 [O] KOG3281 Mitochondrial F1-ATPase assembly protein 57 3e-08
>YNL315c [O] KOG3281 Mitochondrial F1-ATPase assembly protein
Length = 318
Score = 339 bits (869), Expect = 4e-93
Identities = 171/311 (54%), Positives = 225/311 (71%), Gaps = 13/311 (4%)
Query: 13 ASQLSATQFKRIIGASSIQSNSSYSTDSLEQQYKDKLLDKAREQGFNXXXXXXXXXXXXX 72
++QLS F + IG + + + S EQ+Y+ KLL++A++QGFN
Sbjct: 15 SNQLSPI-FNKAIGTVPV---FRFYSSSPEQKYRKKLLEEAQKQGFNSIEELKNHLKETI 70
Query: 73 XXXXXXXXRIDPLKELEDYEQRTKMSSN-----IAKSRGPIDPSMPKQPFKTLDSFLDVE 127
+IDPLKELEDY+Q+T+M +N + KSR P+DPS PK PFKTLDSFLDV
Sbjct: 71 ESKKREFNKIDPLKELEDYQQKTQMENNNSKHLMTKSRSPLDPSAPKVPFKTLDSFLDVG 130
Query: 128 KVKNLSKQECEFLWRARWANKDNVLNAVVPIDIWEKISALAKENPFFVIPLPRERAVEET 187
K+K+LSKQE EFLWRARWA KDN L AV+P+ +++K+ A A+ NP FV+PLPR+ E+
Sbjct: 131 KLKDLSKQEVEFLWRARWAQKDNTLCAVIPVSVYDKMMANARNNPIFVLPLPRQVQSED- 189
Query: 188 AAESAEKQEPAMEMHYIQWQFVGPKTVHCIMTTLAEYKLHKEFARPHTTLQFHLDLAKEK 247
+ +E ME+HYIQWQFVGP+T HC+MT+LAEYKLH+EFARPHTTLQFH DL K+K
Sbjct: 190 ---AKPNEEQGMELHYIQWQFVGPQTTHCMMTSLAEYKLHQEFARPHTTLQFHSDLVKDK 246
Query: 248 NIVLMNGQVESDSNVSLPESQLLLLNVQRFYGAMGQDSGFAQKRVQLLKDFTNGSPNFNV 307
IV MNG VE D+NV++ ++QLLLLNVQRFYGAMG+++ A++RVQLL+DF+ SP F V
Sbjct: 247 GIVFMNGHVEPDTNVNVQDAQLLLLNVQRFYGAMGEETPVAKQRVQLLRDFSKASPGFTV 306
Query: 308 DLLVALSQVME 318
+ L++LSQ ME
Sbjct: 307 EKLISLSQSME 317
>SPAC3A12.12 [O] KOG3281 Mitochondrial F1-ATPase assembly protein
Length = 286
Score = 115 bits (288), Expect = 8e-26
Identities = 67/189 (35%), Positives = 104/189 (54%), Gaps = 17/189 (8%)
Query: 114 KQPFKTLDSFLDVEKVKNLSKQECEFLWRARWANKDNVLNAVVPIDIWEKISALAKENPF 173
K L+ ++DVEK+K L E LWRAR D++L+A +P +I+EK+ + A+ P+
Sbjct: 100 KSDLSGLNRYIDVEKIKELPTSTIEKLWRARNIG-DDILSACIPKEIYEKMLSRARMYPY 158
Query: 174 FVIPLPRERAVEETAAESAEKQEPAMEMHYIQWQFVGPKTVHCIMTTLAEYKLHKEFARP 233
FV+PLPR + +E H++QW F H ++T+L EYKL +A P
Sbjct: 159 FVLPLPRG--------------DKGIESHFLQWNFPNKNEAHLLVTSLLEYKLKGSYAAP 204
Query: 234 HTTLQFHLDLAKEKNIVLMNGQVESDSNVSLPESQLLLLNVQRFYGAMGQDSGFAQKRVQ 293
HT + DL K I LM Q E +S + QLL+L +Q+FY A +++ ++R+
Sbjct: 205 HTIMLHFADLLNLKGITLMRCQFE-PKKLSANDVQLLVLAIQKFYNA-SENTPLGKERLA 262
Query: 294 LLKDFTNGS 302
LL F+ G+
Sbjct: 263 LLAAFSKGA 271
>7300175 [O] KOG3281 Mitochondrial F1-ATPase assembly protein
Length = 254
Score = 64.3 bits (155), Expect = 2e-10
Identities = 59/237 (24%), Positives = 108/237 (44%), Gaps = 34/237 (14%)
Query: 82 IDPLKELEDYEQRTKMSSNIAKSRGPIDPSMPKQ-PFKTLDSFLDVEKVKNLSKQECEFL 140
++P+K D + +++ S + + + + P K L + +E +++ + +E +
Sbjct: 47 VNPIK---DGQSQSRSYSELLNPKQKLQAEQAAELPHKKLTDIMKLELIEDKTAEEVSQI 103
Query: 141 WRARWANKDNVLNAVVPIDIWEKISALAKENPFFVIPLPRERAVEETAAESAEKQEPAME 200
W K+ VL A + +E + A AKE+P F++PLPR E
Sbjct: 104 WLEYHKTKE-VLAATLSTSQYENLMARAKEHPVFLLPLPRSEGFE--------------- 147
Query: 201 MHYIQWQFVGPKTVHCIMTTLAEYKLHKEFARPHTTLQFHLDLAKEKNIVLMNGQVESDS 260
++ QF TVH T L Y++H E A P H ++K +VLM G+ ++
Sbjct: 148 --FVMLQFAA-NTVH--FTPLLAYQVHHENA-PECLTVVHYTEVQDKGVVLMRGEYDT-K 200
Query: 261 NVSLPESQLLLLNVQRFYGAMGQDSGFAQKRVQLLKDFTNGSPNF-NVDLLVALSQV 316
++ E+Q L +Q FY + D G +++LL FT F ++DL+ + +
Sbjct: 201 VLTAQEAQCLANELQMFY--LKPDEG----KLRLLNTFTRKPDEFKHMDLIKEVENI 251
>Hs16159302 [O] KOG3281 Mitochondrial F1-ATPase assembly protein
Length = 328
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 118 KTLDSFLDVEKVKNLSKQECEFLWRARWANKDNVLNAVVPIDIWEKISALAKENPFFVIP 177
KTL S ++E VK + +E + +W+ +A KD V AV+P + ++ I A+ P F+
Sbjct: 142 KTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVY-AVIPAEKFDLIWNRAQSCPTFLCA 200
Query: 178 LPRERAVEETAAESAEKQEPAMEMHYIQWQFVGPKTVHCIMTTLAEYKLHKEFARPHTTL 237
LPR E Q E+H+ T L + E A L
Sbjct: 201 LPRREGYEFFVG-----QWTGTELHF---------------TALINIQTRGEAAASQLIL 240
Query: 238 QFHLDLAKEKNIVLMNGQVESDSNVSLPESQLLLLNVQRFY 278
+ +L +EK IVLM +++S + +++ E+Q + VQ FY
Sbjct: 241 YHYPELKEEKGIVLMTAEMDS-TFLNVAEAQCIANQVQLFY 280
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,980,331
Number of Sequences: 60738
Number of extensions: 650349
Number of successful extensions: 1798
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1788
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 30,389,216
effective HSP length: 106
effective length of query: 212
effective length of database: 23,950,988
effective search space: 5077609456
effective search space used: 5077609456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)