ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1897 good S KOG3393 Function unknown Predicted membrane protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1897 671600 672127 176
(176 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL129w [S] KOG3393 Predicted membrane protein 214 5e-56
SPBC8D2.02c [S] KOG3393 Predicted membrane protein 127 1e-29
SPBPI063 [S] KOG3393 Predicted membrane protein 67 1e-11
>YOL129w [S] KOG3393 Predicted membrane protein
Length = 184
Score = 214 bits (545), Expect = 5e-56
Identities = 108/179 (60%), Positives = 128/179 (71%), Gaps = 7/179 (3%)
Query: 5 HERLFRLPFKLPTSVSAKKVCVYVAGALYGAGLWSFLDCVLYSKHANGSDLHISFIDWVP 64
H LFR PFK+PT +K VY++GALY G W FLD VLYS+++N SD+H++FIDW+P
Sbjct: 6 HVSLFRFPFKIPTFRGIRKGGVYLSGALYALGFWIFLDAVLYSRYSNASDVHVTFIDWIP 65
Query: 65 MLCSVLGMAIVSSIEKNRLLQDALSS--GTFTG-----SQSTAWQARVVLFLGFSLLASG 117
LCS LG IV+SIEKNRLLQ ALSS G F S AWQAR VLF GF+LLA G
Sbjct: 66 FLCSTLGTLIVNSIEKNRLLQGALSSDGGAFGSGVGDLDSSMAWQARTVLFFGFALLAGG 125
Query: 118 ISGSLVVLIVKFLLKDYTSYPTLGMGXXXXXXXXXXXXSCTMLWIGQNVEDEYNYSLTL 176
+SGS+VVLI+KFL+KDY +YPTLGMG SC +LWI QNVEDEY+YSLTL
Sbjct: 126 LSGSIVVLIIKFLVKDYNTYPTLGMGVNNVLGNVCILLSCVVLWIAQNVEDEYSYSLTL 184
>SPBC8D2.02c [S] KOG3393 Predicted membrane protein
Length = 170
Score = 127 bits (318), Expect = 1e-29
Identities = 66/158 (41%), Positives = 100/158 (62%), Gaps = 5/158 (3%)
Query: 19 VSAKKVCVYVAGALYGAGLWSFLDCVLYSKHANGSDLHISFIDWVPMLCSVLGMAIVSSI 78
VS++ + VY AG ++ + +W F+D LYS +LHI+FIDW+P LCS+LG+ IV+SI
Sbjct: 18 VSSRSLGVYFAGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIPFLCSILGIVIVNSI 77
Query: 79 EKNRLLQDALSSGTFTGSQSTAWQARVVLFLGFSLLASGISGSLVVLIVKFLLKDYTSYP 138
+K+RL D+ + +T +S A +AR +LF+GF+LLA G+ GS V I+K+++ Y
Sbjct: 78 DKSRLSGDSFA---YT-DESLARKARFILFIGFALLAGGLGGSFTVFILKYVVAGYEG-K 132
Query: 139 TLGMGXXXXXXXXXXXXSCTMLWIGQNVEDEYNYSLTL 176
+L MG S T LWI N+ D+Y+Y+L L
Sbjct: 133 SLLMGSANIISNILFMISATALWITGNMNDDYHYNLQL 170
>SPBPI063 [S] KOG3393 Predicted membrane protein
Length = 117
Score = 67.4 bits (163), Expect = 1e-11
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 VSSIEKNRLLQDALSSGTFTGSQSTAWQARVVLFLGFSLLASGISGSLVVLIVKFLLKDY 134
V+SI+K+RL D+ + +T +S A +AR +LF+GF+LLA G+ GS V I+K+++ Y
Sbjct: 21 VNSIDKSRLSGDSFA---YT-DESLARKARFILFIGFALLAGGLGGSFTVFILKYVVAGY 76
Query: 135 TSYPTLGMGXXXXXXXXXXXXSCTMLWIGQNVEDEYNYSLTL 176
+L MG S T LWI N+ D+Y+Y+L L
Sbjct: 77 EG-KSLLMGSANIISNILFMISATALWITGNMNDDYHYNLQL 117
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,647,142
Number of Sequences: 60738
Number of extensions: 343193
Number of successful extensions: 655
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 30,389,216
effective HSP length: 99
effective length of query: 77
effective length of database: 24,376,154
effective search space: 1876963858
effective search space used: 1876963858
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)