ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV1961    suspect: LH   S     KOG4704  Function unknown                                               Uncharacterized conserved protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV1961 690760  691905 382  
         (382 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YKL047w [S] KOG4704 Uncharacterized conserved protein                 135   8e-32

>YKL047w [S] KOG4704 Uncharacterized conserved protein
          Length = 516

 Score =  135 bits (341), Expect = 8e-32
 Identities = 125/473 (26%), Positives = 210/473 (43%), Gaps = 106/473 (22%)

Query: 3   IFVHEFDVLKGNTLVWT---NGDAKTLEGLEYTVLPSGIHLRNTDTVYFKLDGKP----- 54
           IF+ +FD+ KGN ++W+   NG A  L  +E+  LP+GIH +  D V F +  +      
Sbjct: 33  IFLSKFDMKKGNIIIWSKSINGAAIDLSNIEFKSLPAGIHEQTDDVVNFVVPKELDVCQT 92

Query: 55  --------GLAVFKQNTMELEASQHHIDRSKVRMFSFGTIFD--------HPMDYEQL-- 96
                   G+A FKQN+ ++  + + IDRSKV+MFS G I D            Y+++  
Sbjct: 93  AKTTTYDYGIAYFKQNSFDIIENDNRIDRSKVQMFSLGVIIDVQNASSDSKKHFYKEIYH 152

Query: 97  ----SLYEGGMKDALERWWKDQD---YSVLEE-WDEKQNGDDTSN----FDFNGT----- 139
               + Y   ++  L +W + +D   + + E+ +DE   G    N    F+ +       
Sbjct: 153 AYAANRYSSYLESLLGQWIRQRDLDKFDIFEKFFDENNQGHMAENSVEVFEHSPKERRHL 212

Query: 140 -------CLTIGPIVLQLWRCALLQERILIL-NKGVEVKKCNQLCHLLTKMASLEGGTYC 191
                     +GP++  LW+ +LLQ RILIL  +G   + CN L + +  ++ L      
Sbjct: 213 VEYLPYWTRKLGPLIFPLWKASLLQSRILILVPQGESFELCNSLAYCVFLISMLPKNLIG 272

Query: 192 NAMT-------ITMLNAD-----QFKSFEAWCATTSDEILIYDTDLFDKLVIWDPNGIHL 239
           N ++        T+  +D      FK    + ATTS+EIL+Y  +++D +V    +    
Sbjct: 273 NHVSDEYIKPIFTVSTSDIPFLESFKKGNGYVATTSEEILLYKPEIYDIVVKLTSSSTIE 332

Query: 240 RDSMKEI----------KCNEVDFTVFKSL----TSDDLST----FNYQYESSIIWSKLI 281
               KE+          K   +D  V++ L      +D ST     +++    I W + +
Sbjct: 333 ESPEKEVEILTASGEQNKATPLDLEVYEKLILGELQEDASTNATCRHHEVTEPISWLQFL 392

Query: 282 IDGLFMLFTGNLYKPWYHL------------------ELAPIEHPDFVQYFSERTHDIYQ 323
           IDG F+L T       YHL                  E+   E  + V+YF  RT ++Y 
Sbjct: 393 IDGFFLLTTAGYLVAPYHLANNFKIPRHVSGPEPNNSEIQIAE--NLVRYFHRRTSNLYN 450

Query: 324 RLKAIVELFPTQDS---IYQNANILIDLRLDYFN--DTDFIRQLSQHWFEKPV 371
            LK +++     DS   I   A+ L  L LD F+  D  F++ ++  WF++ +
Sbjct: 451 DLKDVIQKSENIDSEQPITIAASFLTKLNLDCFSKQDHQFVKDIALKWFQRSI 503


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.323    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,580,194
Number of Sequences: 60738
Number of extensions: 1109880
Number of successful extensions: 2431
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2426
Number of HSP's gapped (non-prelim): 1
length of query: 382
length of database: 30,389,216
effective HSP length: 108
effective length of query: 274
effective length of database: 23,829,512
effective search space: 6529286288
effective search space used: 6529286288
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)