ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV1994 good A KOG2781 RNA processing and modification U3 small nucleolar ribonucleoprotein (snoRNP) component
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV1994 702044 701196 -283
(283 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL075w [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP... 502 e-142
SPAC19A8.07c [A] KOG2781 U3 small nucleolar ribonucleoprotein (s... 318 4e-87
Hs15529982 [A] KOG2781 U3 small nucleolar ribonucleoprotein (sno... 285 4e-77
At1g63780 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoR... 267 1e-71
CE18464 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP... 254 7e-68
7301265 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP... 252 4e-67
At4g01560 [A] KOG2780 Ribosome biogenesis protein RPF1 contains ... 148 8e-36
7297917 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IM... 139 5e-33
Hs13376605 [A] KOG2780 Ribosome biogenesis protein RPF1 contains... 139 6e-33
CE28332 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IM... 134 1e-31
SPAC4F8.04 [A] KOG2780 Ribosome biogenesis protein RPF1 contains... 123 3e-28
ECU11g1910 [A] KOG2781 U3 small nucleolar ribonucleoprotein (sno... 121 1e-27
YHR088w [A] KOG2780 Ribosome biogenesis protein RPF1 contains IM... 114 2e-25
>YNL075w [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 290
Score = 502 bits (1293), Expect = e-142
Identities = 247/290 (85%), Positives = 271/290 (93%), Gaps = 7/290 (2%)
Query: 1 MLRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPLPKEIAEDEQLQKDFQYDE 60
MLRRQARERREYLYRKAQELQ+SQLQQKRQIIKQALAQGKPLPKE+AEDE LQKDF+YD+
Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
Query: 61 SAQE-------QIDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRG 113
S +E Q+DDEY+ATSGI +P+IIVTTSRDPSTRLSQFAKEIKLLFP AVRLNRG
Sbjct: 61 SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
Query: 114 NYIMPNLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSG 173
NY+MPNLVDAC+ SGT+DLVVLHEHRGVPTSLT+SHFPHGPTA F+LHNVV+RHDI+N+G
Sbjct: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
Query: 174 NQSEVNPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVK 233
NQSEVNPHLIFDNFTT LGKRV ILKHLF GPKKD+ RVITFANRGDFISVRQHVYV+
Sbjct: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
Query: 234 TREGVELAEVGPRFEMRLFELKLGTLENKDADVEWQLRRFVRTASRKDYL 283
TREGVE+AEVGPRFEMRLFEL+LGTLENKDADVEWQLRRF+RTA++KDYL
Sbjct: 241 TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>SPAC19A8.07c [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 289
Score = 318 bits (816), Expect = 4e-87
Identities = 155/282 (54%), Positives = 210/282 (73%), Gaps = 8/282 (2%)
Query: 1 MLRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPLPKEIAEDEQLQKDFQYDE 60
MLRR RERR+++Y++ QELQE++L +KR+ +++AL K L K++ ED QLQKD++YDE
Sbjct: 1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDE 60
Query: 61 SAQEQ------IDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGN 114
S Q +DDEY G EPK++VTTSR+PS+RL+QFAKE++LL P + RLNRGN
Sbjct: 61 SRATQEETETNLDDEYHRL-GEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGN 119
Query: 115 YIMPNLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGN 174
++ +LV+A + + +D+V+LHEHRG+P L +SH P+GPT F+LHNVVLRHDI N+G
Sbjct: 120 IVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGT 179
Query: 175 QSEVNPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKT 234
SE PHLIF+N T+ LGKRV+T L LFPP PK RV+TFAN D+IS R H+Y KT
Sbjct: 180 MSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAKT 239
Query: 235 -REGVELAEVGPRFEMRLFELKLGTLENKDADVEWQLRRFVR 275
+ + L+E GPRFEM+LFE+ LGT++ DADVEW+L+ + R
Sbjct: 240 GPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPYQR 281
>Hs15529982 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 291
Score = 285 bits (730), Expect = 4e-77
Identities = 148/290 (51%), Positives = 206/290 (71%), Gaps = 9/290 (3%)
Query: 1 MLRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPLPKEIAEDE-QLQKDFQYD 59
MLRR+AR RREYLYRKA+E + Q++++ +++AL + + +P E+ + LQ ++D
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60
Query: 60 ESAQE----QIDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNY 115
++ E +DDEY +G+ +PK+++TTSRDPS+RL FAKE+KL+FP A R+NRG +
Sbjct: 61 DAGGEGVTSHVDDEYR-WAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRH 119
Query: 116 IMPNLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQ 175
+ LV AC+ +G +DL+V+HEHRG P L VSH P GPTA+FTL NVV+RHDI + G
Sbjct: 120 EVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTM 179
Query: 176 SEVNPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKT- 234
SE PHLI F++ LGKRV IL++LFP PK D+ RVITFAN+ D+IS R HVY KT
Sbjct: 180 SEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVITFANQDDYISFRHHVYKKTD 238
Query: 235 REGVELAEVGPRFEMRLFELKLGTLENK-DADVEWQLRRFVRTASRKDYL 283
VEL EVGPRFE++L+ ++LGTLE + ADVEW+ + TA ++ +L
Sbjct: 239 HRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>At1g63780 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 294
Score = 267 bits (683), Expect = 1e-71
Identities = 130/294 (44%), Positives = 206/294 (69%), Gaps = 13/294 (4%)
Query: 1 MLRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPLPKEIAEDE-QLQKDFQYD 59
M RR R ++EY+YRK+ E E ++ +++++I++AL +GKP+P E+ E +L+++ +
Sbjct: 1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60
Query: 60 ES----AQEQIDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNY 115
+ + IDDEY A + A+PKI++TTSR+PS L +F KE+K +FP + R+NRG+
Sbjct: 61 DQNTAVPRSHIDDEY-ANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQ 119
Query: 116 IMPNLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNS--- 172
++ +++ ++ +D++++HEHRGVP L +SH P GPTA+F L NVV RHDI +
Sbjct: 120 VISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSI 179
Query: 173 GNQSEVNPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYV 232
G E PHLIF+NFTT +G+RV ILKH+F P PK DA R++TF+N+ D+IS R HVY
Sbjct: 180 GKMPEQYPHLIFNNFTTQMGQRVGNILKHIF-PAPKLDAKRIVTFSNQSDYISFRNHVYD 238
Query: 233 KTREG---VELAEVGPRFEMRLFELKLGTLENKDADVEWQLRRFVRTASRKDYL 283
K G +EL E+GPRFE+RL+++KLGT+E +A++EW +R ++ T+ ++ ++
Sbjct: 239 KGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>CE18464 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 292
Score = 254 bits (650), Expect = 7e-68
Identities = 135/286 (47%), Positives = 189/286 (65%), Gaps = 6/286 (2%)
Query: 1 MLRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPLPKEIAEDE-QLQKDFQYD 59
M+RR+ R RRE+++RK+ E ++ L++KR+ I+ AL + + +D +L K +
Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWG 60
Query: 60 ESAQEQIDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNYIMPN 119
Q + D EY +G +PKI++TTSRDPS+RL FAKE+KL+FP A R+NRG+Y +
Sbjct: 61 -GQQYETDSEYR-WAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQ 118
Query: 120 LVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQSEVN 179
+V A + ++DL++ E RG P + V H P GPTAFF++ NVV+RHDI N G SE
Sbjct: 119 VVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSEQY 178
Query: 180 PHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKTREG-V 238
PHLIFDN + LG R TILKHLFP PK D+ R+ITF+N D+IS R HVY +G V
Sbjct: 179 PHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRIITFSNSEDYISFRHHVYKTENDGEV 237
Query: 239 ELAEVGPRFEMRLFELKLGTLEN-KDADVEWQLRRFVRTASRKDYL 283
EL E GPRFE++ +++KLGTLE A+ EW LR + TA ++ +L
Sbjct: 238 ELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>7301265 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 298
Score = 252 bits (644), Expect = 4e-67
Identities = 128/284 (45%), Positives = 192/284 (67%), Gaps = 6/284 (2%)
Query: 1 MLRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPL-PKEIAEDEQLQKDFQY- 58
MLR+QAR+RREYLY KA + Q+ ++ + +++ + K + K + + K +Y
Sbjct: 1 MLRKQARQRREYLYNKALTERLKSKQKIQETVVKSINENKAIGSKNVKKSLTAYKSLKYA 60
Query: 59 DESAQEQ-IDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNYIM 117
DE ++ ++DEY +G +PKI++TTS +PS+RL F KE++L+ P A ++NRGNY +
Sbjct: 61 DEGVDDRTVNDEYHY-AGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNRGNYQL 119
Query: 118 PNLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQSE 177
L+ AC+ + +D +++HEHRG+P SL V H P+GPTAFF + +VV+RHDI + G+ SE
Sbjct: 120 TTLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIGHMSE 179
Query: 178 VNPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKTREG 237
PHLIF+NF TP+G R ILKHLFP PK+++ RV++F N D I R H Y +
Sbjct: 180 QKPHLIFNNFKTPIGLRTVKILKHLFPV-PKENSQRVMSFLNHNDSIIFRHHQYKYVNKE 238
Query: 238 VELAEVGPRFEMRLFELKLGTLEN-KDADVEWQLRRFVRTASRK 280
+EL EVGPRF ++L+++KLGTLEN K AD EW R ++ T+ ++
Sbjct: 239 LELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>At4g01560 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 343
Score = 148 bits (374), Expect = 8e-36
Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 31/305 (10%)
Query: 7 RERREYLYRKAQELQESQLQQKRQII------KQALAQGKPLPKEIAEDEQLQKDFQYDE 60
+++R +Y A++ E +L+++++I K+AL G+ P+++ + ++ + DE
Sbjct: 42 KDKRSKVY--AKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIP-KTIENTRESDE 98
Query: 61 SAQEQIDDEYSATSGIAE----------PKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRL 110
+ D+E A E PK+++TT R STR E+ + P +
Sbjct: 99 TVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHYQ 158
Query: 111 NRGNYIMPNLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDIL 170
RG Y + +V+ + L+V+H +R P +L + P+GPTA F L N+VLR DI
Sbjct: 159 KRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDIK 218
Query: 171 NSGNQSEVNPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHV 230
N GN + P L+ +NFTT LG RV + LFPP P RV+TF N+ DFI R H
Sbjct: 219 NHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFFRHHR 278
Query: 231 YV------KTREGVE------LAEVGPRFEMRLFELKLGTLENKDADVEWQLRRFVRTAS 278
Y+ K+ +G E L E GPRF ++L L+ GT + K + EW + + T+
Sbjct: 279 YIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSR 338
Query: 279 RKDYL 283
R+ +L
Sbjct: 339 RRFFL 343
>7297917 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 394
Score = 139 bits (350), Expect = 5e-33
Identities = 92/289 (31%), Positives = 153/289 (52%), Gaps = 12/289 (4%)
Query: 7 RERREYLYRKAQELQESQLQQKRQIIKQALAQGKP--LPKEIAEDEQLQ----KDFQYDE 60
+E+R LY+K ++ + + Q+R+ ++A P + + E +Q + D +E
Sbjct: 106 KEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEE 165
Query: 61 SAQE-QIDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNYIMPN 119
+E Q+DD S EPK+++T + +P T+ +F E+ +FP A+ R +
Sbjct: 166 LQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKK 225
Query: 120 LVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQ-SEV 178
+ + + +D+V+++E R P L V H P+GPTA F L NV L DI + ++
Sbjct: 226 ICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKH 285
Query: 179 NPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKTREG- 237
P +I +NFTT LG V +L LF P+ R +TF N+ D+I R H Y T+EG
Sbjct: 286 RPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGK 345
Query: 238 -VELAEVGPRFEMRLFELKLGTLENKDADVEWQL--RRFVRTASRKDYL 283
V+L E+GPRF ++L L+ GT ++K D W + +R + R+ +L
Sbjct: 346 RVKLRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>Hs13376605 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 349
Score = 139 bits (349), Expect = 6e-33
Identities = 90/290 (31%), Positives = 158/290 (54%), Gaps = 13/290 (4%)
Query: 7 RERREYLY-RKAQELQESQLQQKRQIIKQALAQG-----KPLPKEIAED---EQLQKDFQ 57
++RR ++ R Q+ ++ +L K+++ K+ A G KP+PK I ++ D
Sbjct: 60 KQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPN 119
Query: 58 YDESAQEQIDDEYSAT-SGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNYI 116
+E A ++ DE+++ + PKI++TTS P R + +++ + P + R
Sbjct: 120 DEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 179
Query: 117 MPNLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSG-NQ 175
+ ++ C +DL+V++E R P L +SH P+GPTA F + +V LR +I G +
Sbjct: 180 LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 176 SEVNPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYV-KT 234
+E P +I +NFTT LG + + LFP P+ +V TF N+ D+I R H Y+ ++
Sbjct: 240 TEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRS 299
Query: 235 REGVELAEVGPRFEMRLFELKLGTLENKDADVEWQLR-RFVRTASRKDYL 283
+ V + E+GPRF ++L L+ GT ++K + EW + R + T+ RK +L
Sbjct: 300 EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>CE28332 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 384
Score = 134 bits (338), Expect = 1e-31
Identities = 81/274 (29%), Positives = 139/274 (50%), Gaps = 7/274 (2%)
Query: 15 RKAQELQESQLQQKRQIIKQALAQGKPLPKEIA---EDEQLQKDFQYDESAQEQIDDEYS 71
RK + ++ + Q R + ++ Q K +PK I E + + + DE ++ +DE++
Sbjct: 110 RKDKRARQGERAQIRDELGESAPQ-KEVPKTIESMREYDATMVNEEDDEVEHDEANDEFA 168
Query: 72 AT-SGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNYIMPNLVDACQTSGTS 130
+ PK+++T + +F E++ P + R N ++ +++ + +
Sbjct: 169 PYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFT 228
Query: 131 DLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQSEVNPHLIFDNFTTP 190
DL+V+HE R P + H P GPTA+F ++++ D+ G + P +I +NF T
Sbjct: 229 DLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTR 288
Query: 191 LGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKTREG--VELAEVGPRFE 248
LG + +L LFP PK RV+TF N+ D+I R H Y +EG L E+GPRF
Sbjct: 289 LGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAALLELGPRFT 348
Query: 249 MRLFELKLGTLENKDADVEWQLRRFVRTASRKDY 282
+RL L+ GT + K + EW L+R SR+ +
Sbjct: 349 LRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRF 382
>SPAC4F8.04 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 306
Score = 123 bits (309), Expect = 3e-28
Identities = 87/282 (30%), Positives = 141/282 (49%), Gaps = 14/282 (4%)
Query: 16 KAQELQESQLQQKRQIIKQALAQGKPLPKEIAE----DEQLQKDFQYDESAQEQIDDEYS 71
K + +E ++++ K+ L + +P I DE + +D +E E DDE+S
Sbjct: 25 KLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELKDDEFS 84
Query: 72 A--TSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTA-VRLNRGNYIMPNLVDACQTSG 128
A + PK++VTTS+ S + FA E+ FP A R G+ + + +A G
Sbjct: 85 AYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRG 144
Query: 129 TSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQSEVNPHLIFDNFT 188
+DL+VL+E R +LT+ H P+GP+ +FTL N+ +I N G + P LI +NF+
Sbjct: 145 YTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPELIINNFS 204
Query: 189 TPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKTRE-------GVELA 241
T LG V + LF P+ +V+T + DF+ R+H Y + G L
Sbjct: 205 TRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQ 264
Query: 242 EVGPRFEMRLFELKLGTLENKDADVEWQLRRFVRTASRKDYL 283
E+GPRF MRL ++ G + K+ +V ++ + RK +L
Sbjct: 265 ELGPRFTMRLRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306
>ECU11g1910 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 269
Score = 121 bits (304), Expect = 1e-27
Identities = 79/280 (28%), Positives = 145/280 (51%), Gaps = 19/280 (6%)
Query: 2 LRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPLPKEIAEDEQLQKDFQYDES 61
+ R+ RERREYL +K +E+ + + ++K++ + +AL +P EI +D + D E
Sbjct: 1 MNRRKRERREYLLQKEREMLDKEAEEKKRRLGEALESNTKIPHEIRKDAPMLLDEIIYEG 60
Query: 62 AQEQIDDEYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRGNYIMPNLV 121
+I++E+ PK++VTTSR PS++L FAK + L+ RG +
Sbjct: 61 ---RIEEEHRL------PKVMVTTSRSPSSQLLHFAKHLSLVL-NGENFIRGQLREEEVS 110
Query: 122 DACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQSEVNPH 181
D G + ++++HE+RG P SL VS+FP GPT FT ++ H + +
Sbjct: 111 DVAHKYGYTCVIIVHENRGRPASLAVSYFPFGPTMRFT----IIDHFLTRRAFPLAPKAY 166
Query: 182 LIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYVKTREGVELA 241
+ DN +G +++ + LFP + A R+++ NR D I+ R H ++ + L+
Sbjct: 167 FVCDNMEGTVGIKIKEKMALLFPQCSR--AKRIVSLVNRNDTIAFR-HYLIENGDRTTLS 223
Query: 242 EVGPRFEMRLFELKLGTLENKDADVEWQLRRFVRTASRKD 281
+ ++R +E++ GT E D + EW + ++ + ++
Sbjct: 224 K-SLGMDLRAYEIRKGTFE-MDGEFEWAYKPYMNSRRTRE 261
>YHR088w [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 295
Score = 114 bits (285), Expect = 2e-25
Identities = 80/286 (27%), Positives = 137/286 (46%), Gaps = 16/286 (5%)
Query: 2 LRRQARERREYLYRKAQELQESQLQQKRQIIKQALAQGKPLPKEIAEDEQLQKDFQYDES 61
++ + + R + RK + + + + Q +K+ + Q + DE + K+ + DE
Sbjct: 22 IKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQ--TIENTRVYDETINKEVEGDE- 78
Query: 62 AQEQIDD--EYSATSGIAEPKIIVTTSRDPSTRLSQFAKEIKLLFPTAVRLNRG-NYIMP 118
DD Y ++ PKI +TT+ + +FA + + P + R Y +
Sbjct: 79 -----DDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLK 133
Query: 119 NLVDACQTSGTSDLVVLHEHRGVPTSLTVSHFPHGPTAFFTLHNVVLRHDILNSGNQSEV 178
+ D C +D+V+++E + T LT H P GPT +F L + V I+ G +
Sbjct: 134 EISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSH 193
Query: 179 NPHLIFDNFTTPLGKRVETILKHLFPPGPKKDAARVITFANRGDFISVRQHVYV-KTREG 237
P LI +NF T LG+ V + + + P P + +VIT N+ D+I R+H YV K E
Sbjct: 194 IPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNER 253
Query: 238 VELAEVGPRFEMRLFELKLGTLENKDADVEWQLRRFVRTASRKDYL 283
V L E+GP+F ++L L+ G E + EW+ + + +K YL
Sbjct: 254 VGLQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,964,258
Number of Sequences: 60738
Number of extensions: 744378
Number of successful extensions: 3358
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3317
Number of HSP's gapped (non-prelim): 13
length of query: 283
length of database: 30,389,216
effective HSP length: 105
effective length of query: 178
effective length of database: 24,011,726
effective search space: 4274087228
effective search space used: 4274087228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)