ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2043 check: MH S KOG0294 Function unknown WD40 repeat-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2043 717476 718645 390
(390 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL021c [S] KOG0294 WD40 repeat-containing protein 453 e-127
Hs20556143 [S] KOG0294 WD40 repeat-containing protein 131 1e-30
Hs8923577 [S] KOG0294 WD40 repeat-containing protein 130 3e-30
7293059 [S] KOG0294 WD40 repeat-containing protein 76 7e-14
SPAC29E6.01 [S] KOG0281 Beta-TrCP (transducin repeats containing... 74 3e-13
7293058 [S] KOG0294 WD40 repeat-containing protein 72 1e-12
Hs16306498 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 70 4e-12
Hs16306496 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 70 4e-12
Hs16306494 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 70 4e-12
Hs7657439 [K] KOG0263 Transcription initiation factor TFIID subu... 70 7e-12
Hs5031817 [D] KOG0267 Microtubule severing protein katanin p80 s... 70 7e-12
SPBC354.03 [R] KOG0266 WD40 repeat-containing protein 69 1e-11
At5g23430 [D] KOG0267 Microtubule severing protein katanin p80 s... 69 2e-11
SPCC16C4.08c [S] KOG0294 WD40 repeat-containing protein 68 2e-11
At1g65030 [S] KOG0294 WD40 repeat-containing protein 68 3e-11
Hs4502477 [S] KOG0281 Beta-TrCP (transducin repeats containing)/... 67 3e-11
Hs16117783 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 67 3e-11
CE28600 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Sl... 67 3e-11
YMR116c [T] KOG0279 G protein beta subunit-like protein 65 2e-10
At5g08390 [D] KOG0267 Microtubule severing protein katanin p80 s... 65 2e-10
YDL145c [U] KOG0292 Vesicle coat complex COPI alpha subunit 64 3e-10
At2g21390 [U] KOG0292 Vesicle coat complex COPI alpha subunit 64 3e-10
7300706 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Sl... 64 4e-10
7293188 [D] KOG0267 Microtubule severing protein katanin p80 sub... 64 5e-10
Hs4758030 [U] KOG0292 Vesicle coat complex COPI alpha subunit 63 7e-10
At1g61210 [D] KOG0267 Microtubule severing protein katanin p80 s... 63 7e-10
YPR178w [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (... 63 9e-10
YIL046w [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 63 9e-10
7292465 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 63 9e-10
Hs5803221 [A] KOG0306 WD40-repeat-containing subunit of the 18S ... 62 1e-09
7303687 [K] KOG0263 Transcription initiation factor TFIID subuni... 62 1e-09
At1g11160 [D] KOG0267 Microtubule severing protein katanin p80 s... 62 1e-09
7302979 [S] KOG0295 WD40 repeat-containing protein 62 1e-09
YNL006w [R] KOG0315 G-protein beta subunit-like protein (contain... 62 2e-09
SPAC57A10.05c [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 62 2e-09
CE27762 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 62 2e-09
CE25007 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 62 2e-09
At5g49430 [R] KOG0644 Uncharacterized conserved protein contains... 62 2e-09
At2g41500 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4... 62 2e-09
7293972 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (... 61 2e-09
At2g47410 [R] KOG0644 Uncharacterized conserved protein contains... 60 4e-09
At1g62020 [U] KOG0292 Vesicle coat complex COPI alpha subunit 60 4e-09
Hs16117781 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 60 6e-09
Hs16117779 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 60 6e-09
CE05372 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (... 60 6e-09
7290331 [R] KOG0266 WD40 repeat-containing protein 60 6e-09
YFL009w [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 60 7e-09
CE29136 [U] KOG0292 Vesicle coat complex COPI alpha subunit 59 9e-09
CE11748 [R] KOG0266 WD40 repeat-containing protein 59 1e-08
Hs16554627 [R] KOG0266 WD40 repeat-containing protein 59 2e-08
Hs22052079 [R] KOG0266 WD40 repeat-containing protein 58 2e-08
Hs21071067 [K] KOG0263 Transcription initiation factor TFIID sub... 58 2e-08
Hs21071065 [K] KOG0263 Transcription initiation factor TFIID sub... 58 2e-08
At3g49660 [R] KOG0266 WD40 repeat-containing protein 58 2e-08
SPAC4D7.03 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 58 3e-08
Hs4557741 [S] KOG0295 WD40 repeat-containing protein 58 3e-08
Hs18544419 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp... 58 3e-08
ECU01g1290 [U] KOG0292 Vesicle coat complex COPI alpha subunit 58 3e-08
7292122 [U] KOG0292 Vesicle coat complex COPI alpha subunit 58 3e-08
SPCC18.05c [S] KOG0271 Notchless-like WD40 repeat-containing pro... 57 4e-08
Hs13376840 [R] KOG4155 FOG: WD40 repeat 57 6e-08
CE29339 [S] KOG0295 WD40 repeat-containing protein 57 6e-08
CE00901 [R] KOG0266 WD40 repeat-containing protein 57 6e-08
ECU01g1300 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 56 8e-08
CE06574 [R] KOG0266 WD40 repeat-containing protein 56 8e-08
Hs4759276 [A] KOG0299 U3 snoRNP-associated protein (contains WD4... 56 1e-07
YLR129w [A] KOG0306 WD40-repeat-containing subunit of the 18S rR... 55 1e-07
YGL004c [R] KOG0266 WD40 repeat-containing protein 55 1e-07
YBR198c [K] KOG0263 Transcription initiation factor TFIID subuni... 55 1e-07
SPAC227.12 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp... 55 1e-07
Hs4758558 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4... 55 1e-07
YJL112w [R] KOG4155 FOG: WD40 repeat 55 2e-07
SPBPJ4664.04 [U] KOG0292 Vesicle coat complex COPI alpha subunit 55 2e-07
7296187 [S] KOG0271 Notchless-like WD40 repeat-containing protein 55 2e-07
YPL183c [R] KOG0974 WD-repeat protein WDR6 WD repeat superfamily 55 2e-07
At3g21540 [A] KOG0306 WD40-repeat-containing subunit of the 18S ... 55 2e-07
7303128 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 ... 55 2e-07
7290824 [DK] KOG0973 Histone transcription regulator HIRA WD rep... 54 3e-07
At1g52360 [U] KOG0276 Vesicle coat complex COPI beta' subunit 54 4e-07
SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein 54 5e-07
CE16234 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NU... 53 7e-07
YPL151c [A] KOG0285 Pleiotropic regulator 1 53 9e-07
Hs9506645 [R] KOG0266 WD40 repeat-containing protein 53 9e-07
Hs4758032 [U] KOG0276 Vesicle coat complex COPI beta' subunit 53 9e-07
Hs4505895 [A] KOG0285 Pleiotropic regulator 1 53 9e-07
At3g15980 [U] KOG0276 Vesicle coat complex COPI beta' subunit 53 9e-07
YCR072c [S] KOG0271 Notchless-like WD40 repeat-containing protein 52 1e-06
HsM7219910 [DK] KOG0973 Histone transcription regulator HIRA WD ... 52 1e-06
Hs21536485 [DK] KOG0973 Histone transcription regulator HIRA WD ... 52 1e-06
At1g79990 [U] KOG0276 Vesicle coat complex COPI beta' subunit 52 1e-06
7302600 [R] KOG4155 FOG: WD40 repeat 52 1e-06
Hs4506439 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 52 2e-06
7299285 [R] KOG4155 FOG: WD40 repeat 52 2e-06
7297878 [K] KOG1034 Transcriptional repressor EED/ESC/FIE requir... 52 2e-06
SPAC630.14c [R] KOG0266 WD40 repeat-containing protein 52 2e-06
Hs13376751 [R] KOG0266 WD40 repeat-containing protein 52 2e-06
ECU08g1250 [U] KOG0276 Vesicle coat complex COPI beta' subunit 52 2e-06
SPBC21B10.05c [R] KOG0315 G-protein beta subunit-like protein (c... 51 3e-06
SPAC4D7.05 [JT] KOG0643 Translation initiation factor 3 subunit ... 51 3e-06
Hs5174447 [T] KOG0279 G protein beta subunit-like protein 51 3e-06
Hs20548461 [R] KOG0644 Uncharacterized conserved protein contain... 51 3e-06
7297305 [T] KOG0279 G protein beta subunit-like protein 51 3e-06
7294830 [K] KOG0263 Transcription initiation factor TFIID subuni... 51 3e-06
YOR269w [S] KOG0295 WD40 repeat-containing protein 51 3e-06
At5g52820 [S] KOG0271 Notchless-like WD40 repeat-containing protein 51 3e-06
Hs7108333_2 [R] KOG4155 FOG: WD40 repeat 51 3e-06
Hs5032027 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/... 50 4e-06
ECU11g1750 [K] KOG0263 Transcription initiation factor TFIID sub... 50 4e-06
ECU03g1520 [DO] KOG0305 Anaphase promoting complex Cdc20 Cdh1 an... 50 4e-06
7301796 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (... 50 4e-06
7300370 [A] KOG0306 WD40-repeat-containing subunit of the 18S rR... 50 4e-06
YCR084c [R] KOG0266 WD40 repeat-containing protein 50 6e-06
SPBC2G2.18 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 50 6e-06
Hs8922428 [S] KOG0271 Notchless-like WD40 repeat-containing protein 50 6e-06
CE18673 [U] KOG0276 Vesicle coat complex COPI beta' subunit 50 6e-06
At5g25150 [K] KOG0263 Transcription initiation factor TFIID subu... 50 6e-06
SPBP22H7.07 [A] KOG0285 Pleiotropic regulator 1 50 7e-06
At1g49040 [T] KOG2127 Calmodulin-binding protein CRAG contains D... 50 7e-06
YMR146c [JT] KOG0643 Translation initiation factor 3 subunit i (... 49 1e-05
7298053 [U] KOG0276 Vesicle coat complex COPI beta' subunit 49 1e-05
7296695 [A] KOG0284 Polyadenylation factor I complex subunit PFS2 49 1e-05
>YKL021c [S] KOG0294 WD40 repeat-containing protein
Length = 468
Score = 453 bits (1165), Expect = e-127
Identities = 228/378 (60%), Positives = 277/378 (72%), Gaps = 19/378 (5%)
Query: 4 NQFRIIVGSYEHXXXXXXXXX-------XXTQPLFTPIFHFQAHSLSVKCLDISKRYLVS 56
NQFRIIVGSYEH P F PIFHFQAHSLS+KCL +S+RYLVS
Sbjct: 62 NQFRIIVGSYEHNILCLSLDIPNQKENDAAKTPHFMPIFHFQAHSLSIKCLAVSRRYLVS 121
Query: 57 GSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDAD-----GQDIQLNKWLLSASE 111
GSNDE+IRIYDLQKRKELGTLL HQGSIT L+FS + + + +KWLLSASE
Sbjct: 122 GSNDEHIRIYDLQKRKELGTLLSHQGSITALQFSHPASSSEDAAVSKGSKNSKWLLSASE 181
Query: 112 DHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVL 171
DHKI+VWRVKDWE GTLKGHTAR+ND DIHP+NR+A+SVS+DHSIRLWNLMT++ A VL
Sbjct: 182 DHKIMVWRVKDWETVGTLKGHTARVNDVDIHPTNRIAISVSDDHSIRLWNLMTLRNAAVL 241
Query: 172 KLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHREIDFSRNTLMHLEREII- 230
KLRKYN NG VRW G G Y AVGL +++LI++T +AKV +EI F R TLMH+E I+
Sbjct: 242 KLRKYNTNGTCVRWLGAKGDYFAVGLRDRVLIYETGSAKVFKEIVFQRKTLMHIETHILP 301
Query: 231 -DGEEYIVVGLNSGAVQFWKASKLY-----XXXXXXXXXXXXXXXXFSLLGHSNRVKDFQ 284
D +EY+ VG++ G V F+ +L+ FSLLGH+NR+KDF+
Sbjct: 302 FDNKEYLSVGISDGNVHFYPCEELFEKVEENEKQEDDDDKEDISPAFSLLGHTNRIKDFK 361
Query: 285 FYHNKFGHYLVTIGSDGRIVVWDMKTRDQVAVYDCGERLNCVAVCDESIEKYDTVKKRAP 344
FY N+FG YLVTIGSDG+IVVWDM T++QVAVYDCGERLNC+ +CDESIEKY+T+KKR
Sbjct: 362 FYTNEFGTYLVTIGSDGKIVVWDMSTKEQVAVYDCGERLNCLTLCDESIEKYNTMKKRDA 421
Query: 345 EEVEVGEPSDVEADPEEL 362
E ++G+ S+VE+D EEL
Sbjct: 422 ETADIGDQSEVESDTEEL 439
>Hs20556143 [S] KOG0294 WD40 repeat-containing protein
Length = 392
Score = 131 bits (330), Expect = 1e-30
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 44/333 (13%)
Query: 35 FHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
F AH+ S+ + ++ R++V+GS DE I IYD++K+ E G L+ H G+IT L+F
Sbjct: 36 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHHSGTITCLKFYG--- 92
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSED 154
N+ L+S +ED I +W K WE ++K H ++ IHPS ++A+SV D
Sbjct: 93 --------NRHLISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTD 144
Query: 155 HSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHRE 214
++R WNL+ + A + ++ QN V W Y+ + + NK+ I++ +TA +
Sbjct: 145 KTLRTWNLVEGRSAFIKNIK---QNAHIVEWSPRGEQYVVI-IQNKIDIYQLDTASISGT 200
Query: 215 IDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLL 274
I + + E + V + ++F+ L
Sbjct: 201 ITNEK----RISSVKFLSESVLAVAGDEEVIRFFDCDSL--------------VCLCEFK 242
Query: 275 GHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQV-----AVYDCGERLNCVAVC 329
H NRVKD + H +V+ SDG I +W +K +V + RL C+ V
Sbjct: 243 AHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLGVW 302
Query: 330 DESIEKYDTVKKRAPEEVEVGEPSDVEADPEEL 362
++K +K+ P EPS V + ++
Sbjct: 303 ---LDKVADMKESLP---PAAEPSPVSKEQSKI 329
>Hs8923577 [S] KOG0294 WD40 repeat-containing protein
Length = 391
Score = 130 bits (328), Expect = 3e-30
Identities = 90/333 (27%), Positives = 151/333 (45%), Gaps = 45/333 (13%)
Query: 35 FHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
F AH+ S+ + ++ R++V+GS DE I IYD++K+ E G L+ H G+IT L+F
Sbjct: 36 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHHSGTITCLKFYG--- 92
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSED 154
N+ L+S +ED I +W K WE ++K H ++ IHPS ++A+SV D
Sbjct: 93 --------NRHLISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTD 144
Query: 155 HSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHRE 214
++R WNL+ + A + ++ QN V W Y+ + + NK+ I++ +TA +
Sbjct: 145 KTLRTWNLVEGRSAFIKNIK---QNAHIVEWSPRGEQYVVI-IQNKIDIYQLDTASISGT 200
Query: 215 IDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLL 274
I + + E + V + ++F+ L
Sbjct: 201 ITNEK----RISSVKFLSESVLAVAGDEEVIRFFDCDSL--------------VCLCEFK 242
Query: 275 GHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQV-----AVYDCGERLNCVAVC 329
H NRVKD + H +V+ SDG I +W +K +V + RL C+ V
Sbjct: 243 AHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLGVW 302
Query: 330 DESIEKYDTVKKRAPEEVEVGEPSDVEADPEEL 362
++K +K P EPS V + ++
Sbjct: 303 ---LDKVADMKSLPP----AAEPSPVSKEQSKI 328
>7293059 [S] KOG0294 WD40 repeat-containing protein
Length = 443
Score = 76.3 bits (186), Expect = 7e-14
Identities = 81/321 (25%), Positives = 130/321 (40%), Gaps = 45/321 (14%)
Query: 5 QFRIIVGSYEHXXXXXXXXXXXTQPLFTPI-------FHFQAHSLSVKCLDISKRYLVSG 57
+ IIVG+YE T L + F +H+ S+ + + ++ SG
Sbjct: 4 EMEIIVGTYEEVLLGFKLIKSPTDGLTDSVKFELKQTFADSSHAGSITSVAVQWPWVASG 63
Query: 58 SNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIV 117
D+ I +YD++ RK+ +L H G + L+F+ D+ LLS S+D +I
Sbjct: 64 GTDDRIFVYDMRTRKQSQIILSHAGRVNTLKFT-------PDL---SHLLSGSDDGHMIA 113
Query: 118 WRVKDWENFGT-LKGHTAR-INDFDIHPSNRVAVSVSEDHSIRLWNLM---TVKKAGVLK 172
RV W G K H + + HPS+++A+S+ D + WNL+ K +
Sbjct: 114 TRVGSWTKEGDWQKAHAGQAVTHVSCHPSSKLALSLGGDQVLNTWNLVNGCVAHKTNLKN 173
Query: 173 LRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHREIDFSRNTLMHLEREIIDG 232
+ + W + + G L L I+ E A V R I+ + +DG
Sbjct: 174 KATLDFQTGCLSWSKQGDHFTLSGPL-VLEIWGIENAHVMRRIEMPSKPIC---ITWLDG 229
Query: 233 EEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVKDFQFYHNKFGH 292
E + GL++G + W + K +L H RVK +
Sbjct: 230 NE-CLTGLDNGNIA-WISLK-----------DEDDTPPTFILAHEARVKAIAY----LNE 272
Query: 293 YLVTIGSDGRIVVW--DMKTR 311
L T+ S G I VW DM+TR
Sbjct: 273 LLATVSSAGEIKVWKIDMETR 293
>SPAC29E6.01 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 506
Score = 74.3 bits (181), Expect = 3e-13
Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 28/222 (12%)
Query: 34 IFHFQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
++ HS SV CLD +R LVSGS+D I I+D Q R+ L GH ++ + S
Sbjct: 254 LYKLYGHSGSVLCLDFCRRRNLLVSGSSDSTIIIWDWQNRRPLKVYFGHTDNVLGVVVS- 312
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWEN----FGTLKGHTARINDFDIHPSNRV 147
+++S+S DH VWR+ L+GH A +N +
Sbjct: 313 -----------ENYIISSSRDHTARVWRLDATSPAEACMHVLRGHLASVNSVQYSSKTGL 361
Query: 148 AVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLN-KLLIFKT 206
V+ S D ++R W++ T +++ +Q G + NG +I G + + IF+
Sbjct: 362 IVTASSDRTLRTWDITT---GHCIRIIHAHQRG--IACAQYNGKFIVSGSSDLTIRIFEA 416
Query: 207 ETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFW 248
+ K+ R + + L R + +E IV G G V+ W
Sbjct: 417 SSGKLLRMLQGHED----LIRTVRFNDEKIVSGGYDGTVRIW 454
Score = 73.6 bits (179), Expect = 5e-13
Identities = 72/285 (25%), Positives = 116/285 (40%), Gaps = 42/285 (14%)
Query: 37 FQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDAD 96
F+A SV C+ +VSGS D + ++D+ R L L GH GS+ L F R ++
Sbjct: 217 FRATLDSVYCVQYDDEIMVSGSKDRTVSVWDVNSRFILYKLYGHSGSVLCLDFCRRRNL- 275
Query: 97 GQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLK---GHTARINDFDIHPSNRVAVSVSE 153
L+S S D II+W DW+N LK GHT N + S +S S
Sbjct: 276 ---------LVSGSSDSTIIIW---DWQNRRPLKVYFGHTD--NVLGVVVSENYIISSSR 321
Query: 154 DHSIRLWNLMTVKKAGVLK--LRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKV 211
DH+ R+W L A LR + + V++ + G + L + T
Sbjct: 322 DHTARVWRLDATSPAEACMHVLRGHLASVNSVQYSSKTGLIVTASSDRTLRTWDITTGHC 381
Query: 212 HREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXF 271
R I + + + ++IV G + ++ ++AS
Sbjct: 382 IRIIHAHQRGIACAQY----NGKFIVSGSSDLTIRIFEAS--------------SGKLLR 423
Query: 272 SLLGHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQVAV 316
L GH + ++ +F K +V+ G DG + +W+ T +Q V
Sbjct: 424 MLQGHEDLIRTVRFNDEK----IVSGGYDGTVRIWNFNTGEQHCV 464
>7293058 [S] KOG0294 WD40 repeat-containing protein
Length = 434
Score = 72.0 bits (175), Expect = 1e-12
Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 38/284 (13%)
Query: 35 FHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
F +++ S+ L + ++ SG D I +YD++ RK+ +L H G + L+F+
Sbjct: 41 FADSSYARSITSLAVQWPWVASGGTDGRIFVYDMRTRKQSQIILSHAGRVNTLKFT---- 96
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDW-ENFGTLKGHTAR-INDFDIHPSNRVAVSVS 152
D+ L LLS S+D +I RV W + + K H + + HPS+++A+S+
Sbjct: 97 ---PDLSL---LLSGSDDGHMIATRVGSWTKEYDWQKAHAGQAVTHVSCHPSSKLALSLG 150
Query: 153 EDHSIRLWNLM---TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETA 209
D + WNL+ K + + + W + + G L L I+ E A
Sbjct: 151 GDQVLNTWNLVNGCVAHKTNLKNKATLDFQTGCLSWSKQGDHFTLSGPL-VLEIWGIENA 209
Query: 210 KVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXX 269
V R I+ + +DG E + GL++G + W + K
Sbjct: 210 HVMRRIEMPSKPIC---ITWLDGNE-CLTGLDNGNIA-WISLK-----------DEDDTP 253
Query: 270 XFSLLGHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVW--DMKTR 311
+L H RVK + +L T+ G+I VW DM+TR
Sbjct: 254 PTFILAHEVRVKAIAY----LNEFLATVSIAGQIKVWKIDMETR 293
>Hs16306498 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 508
Score = 70.5 bits (171), Expect = 4e-12
Identities = 50/154 (32%), Positives = 74/154 (47%), Gaps = 33/154 (21%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRG------K 93
H+ SV CL +R +V+GS+D +R++D+ + L TL+ H ++ +LRFS G K
Sbjct: 245 HTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSK 304
Query: 94 D--------ADGQDIQL-----------------NKWLLSASEDHKIIVWRVKDWENFGT 128
D A DI L +K+++SAS D I VW E T
Sbjct: 305 DRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT 364
Query: 129 LKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
L GH I +R+ VS S D++IRLW++
Sbjct: 365 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 396
Score = 55.1 bits (131), Expect = 2e-07
Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 39/271 (14%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
+S V CL ++SG D +I+I+D + L L GH GS+ L++
Sbjct: 205 NSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYD--------- 255
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
+ +++ S D + VW V E TL H + + SN + V+ S+D SI +
Sbjct: 256 ---ERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAV 310
Query: 160 WNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFS 218
W++ + + R + V + YI ++ + ++ T T + R ++
Sbjct: 311 WDMASA--TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 368
Query: 219 RNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSN 278
+ + L+ + +V G + ++ W L GH
Sbjct: 369 KRGIACLQYR----DRLVVSGSSDNTIRLWDIE--------------CGACLRVLEGHEE 410
Query: 279 RVKDFQFYHNKFGHYLVTIGSDGRIVVWDMK 309
V+ +F + + +V+ DG+I VWD++
Sbjct: 411 LVRCIRFDNKR----IVSGAYDGKIKVWDLQ 437
Score = 49.7 bits (117), Expect = 7e-06
Identities = 37/135 (27%), Positives = 61/135 (44%), Gaps = 23/135 (17%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
H + CL R +VSGS+D IR++D++ L L GH+ + +RF
Sbjct: 368 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--------- 418
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWEN---------FGTLKGHTARINDFDIHPSNRVAVS 150
NK ++S + D KI VW ++ + TL H+ R+ F + +S
Sbjct: 419 ---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV--FRLQFDEFQIIS 473
Query: 151 VSEDHSIRLWNLMTV 165
S D +I +W+ + V
Sbjct: 474 SSHDDTILIWDFLNV 488
>Hs16306496 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 529
Score = 70.5 bits (171), Expect = 4e-12
Identities = 50/154 (32%), Positives = 74/154 (47%), Gaps = 33/154 (21%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRG------K 93
H+ SV CL +R +V+GS+D +R++D+ + L TL+ H ++ +LRFS G K
Sbjct: 266 HTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSK 325
Query: 94 D--------ADGQDIQL-----------------NKWLLSASEDHKIIVWRVKDWENFGT 128
D A DI L +K+++SAS D I VW E T
Sbjct: 326 DRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT 385
Query: 129 LKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
L GH I +R+ VS S D++IRLW++
Sbjct: 386 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 417
Score = 55.1 bits (131), Expect = 2e-07
Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 39/271 (14%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
+S V CL ++SG D +I+I+D + L L GH GS+ L++
Sbjct: 226 NSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYD--------- 276
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
+ +++ S D + VW V E TL H + + SN + V+ S+D SI +
Sbjct: 277 ---ERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAV 331
Query: 160 WNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFS 218
W++ + + R + V + YI ++ + ++ T T + R ++
Sbjct: 332 WDMASA--TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 389
Query: 219 RNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSN 278
+ + L+ + +V G + ++ W L GH
Sbjct: 390 KRGIACLQYR----DRLVVSGSSDNTIRLWDIE--------------CGACLRVLEGHEE 431
Query: 279 RVKDFQFYHNKFGHYLVTIGSDGRIVVWDMK 309
V+ +F + + +V+ DG+I VWD++
Sbjct: 432 LVRCIRFDNKR----IVSGAYDGKIKVWDLQ 458
Score = 49.7 bits (117), Expect = 7e-06
Identities = 37/135 (27%), Positives = 61/135 (44%), Gaps = 23/135 (17%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
H + CL R +VSGS+D IR++D++ L L GH+ + +RF
Sbjct: 389 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--------- 439
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWEN---------FGTLKGHTARINDFDIHPSNRVAVS 150
NK ++S + D KI VW ++ + TL H+ R+ F + +S
Sbjct: 440 ---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV--FRLQFDEFQIIS 494
Query: 151 VSEDHSIRLWNLMTV 165
S D +I +W+ + V
Sbjct: 495 SSHDDTILIWDFLNV 509
>Hs16306494 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 542
Score = 70.5 bits (171), Expect = 4e-12
Identities = 50/154 (32%), Positives = 74/154 (47%), Gaps = 33/154 (21%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRG------K 93
H+ SV CL +R +V+GS+D +R++D+ + L TL+ H ++ +LRFS G K
Sbjct: 279 HTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSK 338
Query: 94 D--------ADGQDIQL-----------------NKWLLSASEDHKIIVWRVKDWENFGT 128
D A DI L +K+++SAS D I VW E T
Sbjct: 339 DRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT 398
Query: 129 LKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
L GH I +R+ VS S D++IRLW++
Sbjct: 399 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 430
Score = 55.1 bits (131), Expect = 2e-07
Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 39/271 (14%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
+S V CL ++SG D +I+I+D + L L GH GS+ L++
Sbjct: 239 NSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYD--------- 289
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
+ +++ S D + VW V E TL H + + SN + V+ S+D SI +
Sbjct: 290 ---ERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAV--LHLRFSNGLMVTCSKDRSIAV 344
Query: 160 WNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFS 218
W++ + + R + V + YI ++ + ++ T T + R ++
Sbjct: 345 WDMASA--TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 402
Query: 219 RNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSN 278
+ + L+ + +V G + ++ W L GH
Sbjct: 403 KRGIACLQYR----DRLVVSGSSDNTIRLWDIE--------------CGACLRVLEGHEE 444
Query: 279 RVKDFQFYHNKFGHYLVTIGSDGRIVVWDMK 309
V+ +F + + +V+ DG+I VWD++
Sbjct: 445 LVRCIRFDNKR----IVSGAYDGKIKVWDLQ 471
Score = 49.7 bits (117), Expect = 7e-06
Identities = 37/135 (27%), Positives = 61/135 (44%), Gaps = 23/135 (17%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
H + CL R +VSGS+D IR++D++ L L GH+ + +RF
Sbjct: 402 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--------- 452
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWEN---------FGTLKGHTARINDFDIHPSNRVAVS 150
NK ++S + D KI VW ++ + TL H+ R+ F + +S
Sbjct: 453 ---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV--FRLQFDEFQIIS 507
Query: 151 VSEDHSIRLWNLMTV 165
S D +I +W+ + V
Sbjct: 508 SSHDDTILIWDFLNV 522
>Hs7657439 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 589
Score = 69.7 bits (169), Expect = 7e-12
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 33 PIFHFQAHSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFS 90
P+ + H V C+ + YL +GS D+ +R++ Q+ + GH+G + +L FS
Sbjct: 418 PLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFS 477
Query: 91 RGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVS 150
K+L SA ED ++ +W + + L+GHT I P + + S
Sbjct: 478 PN----------GKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIAS 527
Query: 151 VSEDHSIRLWNL 162
S D+S+R+W++
Sbjct: 528 ASMDNSVRVWDI 539
>Hs5031817 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 655
Score = 69.7 bits (169), Expect = 7e-12
Identities = 36/110 (32%), Positives = 60/110 (53%), Gaps = 10/110 (9%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
++ SGS D NI+++D++++ + GH ++ LRFS DG KWL SA++D
Sbjct: 119 FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFS----PDG------KWLASAADD 168
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
H + +W + + GHT +N + HP+ + S S D +IR W+L
Sbjct: 169 HTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDGTIRFWDL 218
Score = 57.8 bits (138), Expect = 3e-08
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 17/217 (7%)
Query: 39 AHSLSVKCLDISK---RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDA 95
AH+ +V L + K R L +G +D + ++ + K + +L GH + ++R + ++
Sbjct: 18 AHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEEL 77
Query: 96 DGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDH 155
+++ S+ I VW ++ + TL G A I D HP S S+D
Sbjct: 78 ----------IVAGSQSGSIRVWDLEAAKILRTLMGLKANICSLDFHPYGEFVASGSQDT 127
Query: 156 SIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHREI 215
+I+LW++ +K V + R ++Q + +R+ + + + + ++ K+ E
Sbjct: 128 NIKLWDIR--RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSE- 184
Query: 216 DFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASK 252
F +T E E + G + G ++FW K
Sbjct: 185 -FPGHTGPVNVVEFHPNEYLLASGSSDGTIRFWDLEK 220
>SPBC354.03 [R] KOG0266 WD40 repeat-containing protein
Length = 380
Score = 68.9 bits (167), Expect = 1e-11
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 40 HSLSVKCLDIS--KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H SV C+ +S KR++ + S+D I+I+ + TL GH I+ ++++ G
Sbjct: 53 HEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATG----- 107
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+K+L SAS+D I +W + + LKGHT ++ D +P + VS S D ++
Sbjct: 108 -----SKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETV 162
Query: 158 RLWNL 162
R+WNL
Sbjct: 163 RIWNL 167
>At5g23430 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 922
Score = 68.6 bits (166), Expect = 2e-11
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 24/200 (12%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
+ SGS D N++I+D++K+ + T GH + LRF+ DG +W++S ED
Sbjct: 115 FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFT----PDG------RWVVSGGED 164
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLK 172
+ + VW + + K H +I D HP + + S D +++ W+L T + G
Sbjct: 165 NIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIG--- 221
Query: 173 LRKYNQNGQFVRWCGEN--GSYIAVGLLNKLLIFKTETAKVHREID--FSRNTLMHLERE 228
VR N G + GL L IF E + H +D +SR + M++
Sbjct: 222 --SGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEG 279
Query: 229 IIDGEEYIVVGLNSGAVQFW 248
+ G Y N V W
Sbjct: 280 KLLGCSY-----NQSCVGVW 294
Score = 58.5 bits (140), Expect = 2e-08
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 37 FQAHSLSVKCLDI---SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGK 93
F AHS +V CL I S R LV+G D + ++ + K + +L GH I ++ F
Sbjct: 12 FVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTF---- 67
Query: 94 DADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSE 153
D ++ + S + I +W +++ + TL GH + D HP S S
Sbjct: 68 --DASEVLVAAGAASGT----IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL 121
Query: 154 DHSIRLWNLMTVKKAGVLKLRKYNQNG-QFVRWCGENGSYIAVGLLNKLLIFKTETAKVH 212
D ++++W+ ++K G + K + G +R+ + ++ G N + ++ K+
Sbjct: 122 DTNLKIWD---IRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLL 178
Query: 213 REIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFW 248
E + L + E + G V+FW
Sbjct: 179 TEFKSHEGQIQSL--DFHPHEFLLATGSADRTVKFW 212
>SPCC16C4.08c [S] KOG0294 WD40 repeat-containing protein
Length = 341
Score = 68.2 bits (165), Expect = 2e-11
Identities = 82/360 (22%), Positives = 147/360 (40%), Gaps = 47/360 (13%)
Query: 7 RIIVGSYEHXXXXXXXXXXXTQPLFTPIFHFQAHSLSVKCLDISKRYLVSGSNDENIRIY 66
R +VG+Y H + P++ F+AH ++ L + YL S S+DE I+I+
Sbjct: 3 RFVVGTYTHLIYGVDADIERKK--CKPLWLFEAHEGALTALAVDGIYLASTSSDETIKIF 60
Query: 67 DLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNK-WLLSASEDHKIIVWRVKDWEN 125
D + ++ + I N A +D+ K LL+ ++ +I +W W
Sbjct: 61 DHTRNVQIADV-SVPTDIAN--------ACIRDMCFTKNHLLACHDNGQISMWSKGSWLL 111
Query: 126 FGTLKGHTAR-INDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVR 184
TLK + + I +HPS ++A++V D +RLW+L+ K VL L ++ F+
Sbjct: 112 VHTLKSSSHKGITGIAVHPSEKLALTVGGDGKLRLWDLVRGKGGKVLPLSTIPESILFL- 170
Query: 185 WCGENGSYIAVGLLNKLLIFKTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGA 244
N S + + FK + + FS + ++ + + ++VG ++G
Sbjct: 171 ----NESSFVIMSRRGIDAFKLDLTSL---FSFSSKSQLN---ALCLYQSKLIVGRDNGT 220
Query: 245 VQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVKDFQFYHNKFGHYLVTIGSDGRIV 304
V S H RVK YL+T SDG +
Sbjct: 221 VLVLDTS--------------DGKILHEFTAHKKRVKSVY----PVDDYLITASSDGSVC 262
Query: 305 VWDMKTRDQVAVYDC--GERLNCVA--VCDESIEKYDTVKKRAPEEVEVGEPSDVEADPE 360
+WD K + V ++ G R+ C+ + D + E + + A + E S+ ++ E
Sbjct: 263 IWD-KDWNLVIEHNIPEGNRITCMVAMLADSNSEPKNVEDEAAKRQSLDSETSETSSESE 321
>At1g65030 [S] KOG0294 WD40 repeat-containing protein
Length = 345
Score = 67.8 bits (164), Expect = 3e-11
Identities = 55/216 (25%), Positives = 98/216 (44%), Gaps = 16/216 (7%)
Query: 8 IIVGSYEHXXXXX----XXXXXXTQPL-FTPIFHFQAHSLSVKCLDISKRYLVSGSNDEN 62
II GSYE +Q L +P+F + +H + + S SG +D+
Sbjct: 3 IIAGSYERFIWGFKLKPTKHDAESQTLTLSPLFSYPSHISPITTVACSGPAAASGGSDDT 62
Query: 63 IRIYDLQKRKELGTLLGHQ--GSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRV 120
I +YDL LG+LL H SIT L F + + L+SA+ D + ++
Sbjct: 63 IHLYDLPSASSLGSLLDHNHAASITALSFYTPSS-----LSFPRNLISAAADGSVAIFDT 117
Query: 121 KDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNG 180
+ + + H +ND IHPS ++A++V D + NL+ K++ +L
Sbjct: 118 DPFVLLKSFRPHKKAVNDLAIHPSGKLALAVYRDEFFAMLNLVRGKRSFCCRL---GHEA 174
Query: 181 QFVRWCGENGSYIAVGLLNKLLIFKTETAKVHREID 216
V++ +G + + NK+ + ++E AK+ E++
Sbjct: 175 SLVKF-DPSGERFYMVVSNKVGVHQSEDAKLLLELE 209
>Hs4502477 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 569
Score = 67.4 bits (163), Expect = 3e-11
Identities = 48/154 (31%), Positives = 74/154 (47%), Gaps = 33/154 (21%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRG------K 93
H+ SV CL +R +++GS+D +R++D+ + L TL+ H ++ +LRF+ G K
Sbjct: 306 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 365
Query: 94 D--------ADGQDIQL-----------------NKWLLSASEDHKIIVWRVKDWENFGT 128
D A DI L +K+++SAS D I VW E T
Sbjct: 366 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 425
Query: 129 LKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
L GH I +R+ VS S D++IRLW++
Sbjct: 426 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 457
Score = 50.8 bits (120), Expect = 3e-06
Identities = 56/269 (20%), Positives = 105/269 (38%), Gaps = 39/269 (14%)
Query: 41 SLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDI 100
S V CL + +VSG D I+I+D + L GH GS+ L++
Sbjct: 267 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---------- 316
Query: 101 QLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLW 160
+ +++ S D + VW V E TL H + + +N + V+ S+D SI +W
Sbjct: 317 --ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVW 372
Query: 161 NLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFSR 219
++ + R + V + YI ++ + ++ T T + R ++ +
Sbjct: 373 DM--ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 430
Query: 220 NTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNR 279
+ L+ + +V G + ++ W L GH
Sbjct: 431 RGIACLQYR----DRLVVSGSSDNTIRLWDIE--------------CGACLRVLEGHEEL 472
Query: 280 VKDFQFYHNKFGHYLVTIGSDGRIVVWDM 308
V+ +F + + +V+ DG+I VWD+
Sbjct: 473 VRCIRFDNKR----IVSGAYDGKIKVWDL 497
>Hs16117783 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 605
Score = 67.4 bits (163), Expect = 3e-11
Identities = 48/154 (31%), Positives = 74/154 (47%), Gaps = 33/154 (21%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRG------K 93
H+ SV CL +R +++GS+D +R++D+ + L TL+ H ++ +LRF+ G K
Sbjct: 342 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 401
Query: 94 D--------ADGQDIQL-----------------NKWLLSASEDHKIIVWRVKDWENFGT 128
D A DI L +K+++SAS D I VW E T
Sbjct: 402 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 461
Query: 129 LKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
L GH I +R+ VS S D++IRLW++
Sbjct: 462 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 493
Score = 50.8 bits (120), Expect = 3e-06
Identities = 56/269 (20%), Positives = 105/269 (38%), Gaps = 39/269 (14%)
Query: 41 SLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDI 100
S V CL + +VSG D I+I+D + L GH GS+ L++
Sbjct: 303 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---------- 352
Query: 101 QLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLW 160
+ +++ S D + VW V E TL H + + +N + V+ S+D SI +W
Sbjct: 353 --ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVW 408
Query: 161 NLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFSR 219
++ + R + V + YI ++ + ++ T T + R ++ +
Sbjct: 409 DM--ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 466
Query: 220 NTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNR 279
+ L+ + +V G + ++ W L GH
Sbjct: 467 RGIACLQYR----DRLVVSGSSDNTIRLWDIE--------------CGACLRVLEGHEEL 508
Query: 280 VKDFQFYHNKFGHYLVTIGSDGRIVVWDM 308
V+ +F + + +V+ DG+I VWD+
Sbjct: 509 VRCIRFDNKR----IVSGAYDGKIKVWDL 533
>CE28600 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 665
Score = 67.4 bits (163), Expect = 3e-11
Identities = 70/280 (25%), Positives = 114/280 (40%), Gaps = 52/280 (18%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
H+ SV CL R ++SGS+D +R++D++ + + TL+ H ++ +LRF+ G
Sbjct: 261 HTGSVLCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHLRFANG------- 313
Query: 100 IQLNKWLLSASEDHKIIVWRV---KDWENFGTLKGHTARIN--DFDIHPSNRVAVSVSED 154
+++ S+D I VW + +D L GH A +N DFD +R VS S D
Sbjct: 314 -----IMVTCSKDRSIAVWDMVSPRDITIRRVLVGHRAAVNVVDFD----DRYIVSASGD 364
Query: 155 HSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHRE 214
+I++W++ T+ +FVR + IA L+ + R
Sbjct: 365 RTIKVWSMDTL---------------EFVRTLAGHRRGIACLQYRGRLVVSGSSDNTIRL 409
Query: 215 IDFSRNTLM-------HLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXX 267
D + L R I E+ IV G G ++ W
Sbjct: 410 WDIHSGVCLRVLEGHEELVRCIRFDEKRIVSGAYDGKIKVWDLQ-----AALDPRALSSE 464
Query: 268 XXXFSLLGHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWD 307
SL+ H+ RV QF +V+ D I++WD
Sbjct: 465 ICLCSLVQHTGRVFRLQF----DDFQIVSSSHDDTILIWD 500
Score = 52.0 bits (123), Expect = 2e-06
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
+S V CL +VSG D I+I+D + L GH GS+ L++
Sbjct: 221 NSKGVYCLQYDDDKIVSGLRDNTIKIWDRKDYSCSRILSGHTGSVLCLQYD--------- 271
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
N+ ++S S D + VW V+ E TL H + + +N + V+ S+D SI +
Sbjct: 272 ---NRVIISGSSDATVRVWDVETGECIKTLIHHCEAV--LHLRFANGIMVTCSKDRSIAV 326
Query: 160 WNLMT 164
W++++
Sbjct: 327 WDMVS 331
>YMR116c [T] KOG0279 G protein beta subunit-like protein
Length = 319
Score = 65.1 bits (157), Expect = 2e-10
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 37 FQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
F H V +DI K+ ++SGS D+ I+++ + K + L TLLGH ++ +R +
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSED 154
AD + + +SA D + W + ++ GH + IN P + S +D
Sbjct: 162 ADDDSVTI----ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Query: 155 HSIRLWNLMTVK 166
I LWNL K
Sbjct: 218 GEIMLWNLAAKK 229
Score = 50.4 bits (119), Expect = 4e-06
Identities = 33/95 (34%), Positives = 49/95 (50%), Gaps = 14/95 (14%)
Query: 75 GTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVK-DWENFG----TL 129
GTL GH G +T+L S G+ LLSAS D +I W++ D + FG +
Sbjct: 11 GTLEGHNGWVTSLATSAGQP---------NLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 130 KGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
KGH+ + D + A+S S D ++RLW++ T
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
>At5g08390 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 823
Score = 64.7 bits (156), Expect = 2e-10
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
+ SGS D N++I+D++K+ + T GH + LRF+ DG +W++S ED
Sbjct: 208 FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFT----PDG------RWIVSGGED 257
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAG 169
+ + VW + + K H +I D HP + + S D +++ W+L T + G
Sbjct: 258 NVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLETFELIG 314
Score = 57.4 bits (137), Expect = 4e-08
Identities = 48/223 (21%), Positives = 92/223 (40%), Gaps = 19/223 (8%)
Query: 30 LFTPIFHFQAHSLSVKCLDI---SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITN 86
L + F AHS +V CL I S R LV+G D + ++ + K + +L GH I +
Sbjct: 98 LISSFREFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDS 157
Query: 87 LRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNR 146
+ F + + + + I +W +++ + TL GH + + HP
Sbjct: 158 VTFDASEGL----------VAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGE 207
Query: 147 VAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNG-QFVRWCGENGSYIAVGLLNKLLIFK 205
S S D ++++W+ ++K G + K + G +R+ + ++ G N + ++
Sbjct: 208 FFASGSLDTNLKIWD---IRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWD 264
Query: 206 TETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFW 248
K+ E + L + E + G V+FW
Sbjct: 265 LTAGKLLHEFKSHEGKIQSL--DFHPHEFLLATGSADKTVKFW 305
>YDL145c [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1201
Score = 64.3 bits (155), Expect = 3e-10
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 32 TPIFHFQAHSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRF 89
T + F+ H V+ LD ++ VS +D I+++ L K L TL GH + + F
Sbjct: 44 TLLHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFF 103
Query: 90 SRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAV 149
R W++SAS+D I +W ++ + L GH + HP++ + V
Sbjct: 104 HRELP----------WIISASDDQTIRIWNWQNRKEIACLTGHNHFVMCAQFHPTDDLIV 153
Query: 150 SVSEDHSIRLWNLMTVKK 167
S S D +IR+W++ ++K
Sbjct: 154 SASLDETIRIWDISGLRK 171
>At2g21390 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1218
Score = 64.3 bits (155), Expect = 3e-10
Identities = 40/138 (28%), Positives = 65/138 (46%), Gaps = 12/138 (8%)
Query: 32 TPIFHFQAHSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRF 89
T I F H V+ + S+ VSG +D I++++ + + L TLLGH I ++F
Sbjct: 42 TLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQF 101
Query: 90 SRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAV 149
N W++SAS+D I +W + L GH + HP + V
Sbjct: 102 HHE----------NPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
Query: 150 SVSEDHSIRLWNLMTVKK 167
S S D ++R+W++ +KK
Sbjct: 152 SASLDQTVRVWDIGALKK 169
Score = 52.0 bits (123), Expect = 2e-06
Identities = 53/197 (26%), Positives = 90/197 (44%), Gaps = 40/197 (20%)
Query: 40 HSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITN--LRFSR---- 91
H+ V C + +VS S D+ +R++D+ G L S + +RFS+
Sbjct: 134 HNHYVMCASFHPKEDLVVSASLDQTVRVWDI------GALKKKSASPADDLMRFSQMNSD 187
Query: 92 ---GKDA------DGQDIQLNKW---------LLSASEDHKIIVWRV---KDWENFGTLK 130
G DA +G D +N W ++S ++D ++ +WR+ K WE TL+
Sbjct: 188 LFGGVDAIVKYVLEGHDRGVN-WASFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTLR 245
Query: 131 GHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENG 190
GH ++ H + VS SED SIR+W+ K+ G+ R+ + + E
Sbjct: 246 GHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD--ATKRTGIQTFRREHDRFWILAVHPEI- 302
Query: 191 SYIAVGLLNKLLIFKTE 207
+ +A G N +++FK E
Sbjct: 303 NLLAAGHDNGMIVFKLE 319
>7300706 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 510
Score = 63.9 bits (154), Expect = 4e-10
Identities = 46/154 (29%), Positives = 71/154 (45%), Gaps = 33/154 (21%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRG------K 93
H+ SV CL + ++SGS+D +R++D+ + + TL+ H ++ +LRF+ G K
Sbjct: 249 HTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSK 308
Query: 94 DAD-------------------GQDIQLN------KWLLSASEDHKIIVWRVKDWENFGT 128
D G +N K+++SAS D I VW E T
Sbjct: 309 DRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRT 368
Query: 129 LKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
L GH I +R+ VS S D+SIRLW++
Sbjct: 369 LNGHKRGIACLQYR--DRLVVSGSSDNSIRLWDI 400
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
+S V CL +VSG D I+I+D + + TL+GH GS+ L++
Sbjct: 209 NSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYD--------- 259
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
+K ++S S D + VW V E TL H + + +N + V+ S+D SI +
Sbjct: 260 ---DKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAV 314
Query: 160 WNL 162
W++
Sbjct: 315 WDM 317
Score = 50.1 bits (118), Expect = 6e-06
Identities = 36/125 (28%), Positives = 59/125 (46%), Gaps = 7/125 (5%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG-Q 98
H + CL R +VSGS+D +IR++D++ L L GH+ + +RF + G
Sbjct: 372 HKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAY 431
Query: 99 DIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIR 158
D ++ W L A+ D + + TL HT R+ F + VS S D +I
Sbjct: 432 DGKIKVWDLVAALDPR----AASNTLCLNTLVEHTGRV--FRLQFDEFQIVSSSHDDTIL 485
Query: 159 LWNLM 163
+W+ +
Sbjct: 486 IWDFL 490
>7293188 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 296
Score = 63.5 bits (153), Expect = 5e-10
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 30 LFTPIFHFQAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNL 87
L + I+ +AH V LD+ + R LV+G D N+ ++ + + + +L GH SI +
Sbjct: 7 LISKIYDIKAHDSRVTSLDLGETGRVLVTGGEDRNVNLWAIGQNECFMSLTGHNRSIDCV 66
Query: 88 RFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRV 147
RF+ KD ++ SA + I W + + + TL GH + D +PS
Sbjct: 67 RFAY-KD---------NFVYSADDIGIIRRWDLNSQKIYSTLNGHMKSVRTLDFNPSGEY 116
Query: 148 AVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTE 207
VS S D ++RLW++ + R + + V++ + + GL +LI+
Sbjct: 117 VVSGSNDTTVRLWDVQNENNC-IKVCRGHMSHVNSVKFSPDGLWIASAGLEGSILIWDIR 175
Query: 208 TAK 210
+K
Sbjct: 176 KSK 178
>Hs4758030 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1224
Score = 63.2 bits (152), Expect = 7e-10
Identities = 42/138 (30%), Positives = 65/138 (46%), Gaps = 12/138 (8%)
Query: 32 TPIFHFQAHSLSVKCLDISKRY--LVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRF 89
T I F H V+ +D K+ VSG +D I++++ + R+ L TLLGH I F
Sbjct: 42 TLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFF 101
Query: 90 SRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAV 149
W+LSAS+D I VW + L GH + HP+ + V
Sbjct: 102 HHEYP----------WILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVV 151
Query: 150 SVSEDHSIRLWNLMTVKK 167
S S D ++R+W++ ++K
Sbjct: 152 SASLDQTVRVWDISGLRK 169
Score = 53.5 bits (127), Expect = 5e-07
Identities = 51/192 (26%), Positives = 91/192 (46%), Gaps = 29/192 (15%)
Query: 40 HSLSVKCLDI--SKRYLVSGSNDENIRIYDLQ--KRKEL--GTLLGHQGSITNLRFSRGK 93
H+ V C ++ +VS S D+ +R++D+ ++K L G + IT +
Sbjct: 134 HNHYVMCAQFHPTEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTT 193
Query: 94 DA------DGQDIQLNKW---------LLSASEDHKIIVWRV---KDWENFGTLKGHTAR 135
DA +G D +N W ++S ++D ++ +WR+ K WE T +GH
Sbjct: 194 DAVVKHVLEGHDRGVN-WAAFHPTMPLIVSGADDRQVKIWRMNESKAWE-VDTCRGHYNN 251
Query: 136 INDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAV 195
++ HP + +S SED SIR+W++ K+ GV R+ + + +V N + A
Sbjct: 252 VSCAVFHPRQELILSNSEDKSIRVWDMS--KRTGVQTFRR-DHDRFWVLAAHPNLNLFAA 308
Query: 196 GLLNKLLIFKTE 207
G +++FK E
Sbjct: 309 GHDGGMIVFKLE 320
>At1g61210 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 282
Score = 63.2 bits (152), Expect = 7e-10
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
+L SGS+D N++I+D++K+ + T GH I+ +RF+ DG +W++S D
Sbjct: 144 FLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFT----PDG------RWVVSGGLD 193
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAG 169
+ + VW + + K H I D HP + + S D +++ W+L T + G
Sbjct: 194 NVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIG 250
Score = 58.5 bits (140), Expect = 2e-08
Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 37 FQAHSLSVKCLDISK---RYLVSGSNDENIRIYDLQKRKEL----------GTLLGHQGS 83
F AHS +V CL I K R ++G +D + ++ + K L +L GH +
Sbjct: 31 FLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMKNDAIAFYWQSLCGHTSA 90
Query: 84 ITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHP 143
+ ++ F D ++ +L+ + I +W V++ + GH + + + HP
Sbjct: 91 VDSVAF------DSAEV----LVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHP 140
Query: 144 SNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNG-QFVRWCGENGSYIAVGLLNKLL 202
S S D ++++W+ ++K G ++ K + G +R+ + ++ GL N +
Sbjct: 141 FGEFLASGSSDANLKIWD---IRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVK 197
Query: 203 IFKTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFW 248
++ K+ E F + L+ + E + G V+FW
Sbjct: 198 VWDLTAGKLLHEFKFHEGPIRSLDFHPL--EFLLATGSADRTVKFW 241
>YPR178w [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 465
Score = 62.8 bits (151), Expect = 9e-10
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 54 LVSGSNDENIRIYDLQKRKE--LGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASE 111
+ +G D I ++D++KR E L +L H+ +T +RFS+ DG K L+S
Sbjct: 364 VATGGGDGIINVWDIRKRDEGQLNQILAHRNIVTQVRFSK---EDG-----GKKLVSCGY 415
Query: 112 DHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWN 161
D+ I V+ W G+L GHT +I DI ++ VS D SI+LWN
Sbjct: 416 DNLINVYSSDTWLKMGSLAGHTDKIISLDISNNSHFLVSGGWDRSIKLWN 465
>YIL046w [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 640
Score = 62.8 bits (151), Expect = 9e-10
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 34 IFHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGK 93
I HS VK L R L++GS D+ IR+++ + + T GH S+ ++
Sbjct: 335 IRRLSGHSDGVKTLYFDDRKLITGSLDKTIRVWNYITGECISTYRGHSDSVLSVD----- 389
Query: 94 DADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSE 153
K ++S S D + VW V+ + TL+GHT +N +HP + S S+
Sbjct: 390 -------SYQKVIVSGSADKTVKVWHVESRTCY-TLRGHTEWVNCVKLHPKSFSCFSCSD 441
Query: 154 DHSIRLWNLMT 164
D +IR+W++ T
Sbjct: 442 DTTIRMWDIRT 452
>7292465 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 1326
Score = 62.8 bits (151), Expect = 9e-10
Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 14/127 (11%)
Query: 38 QAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
Q H+ +V+C+ + +VSGS D +R++D+++ L L+GH ++ +++ DG
Sbjct: 1072 QGHTSTVRCMHLHGSKVVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQY------DG 1125
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
K ++S + D+ + +W + E TL+GHT R+ + + VS S D SI
Sbjct: 1126 ------KLIVSGAYDYMVKIWHPERQECLHTLQGHTNRV--YSLQFDGLHVVSGSLDTSI 1177
Query: 158 RLWNLMT 164
R+W++ T
Sbjct: 1178 RVWDVET 1184
Score = 58.9 bits (141), Expect = 1e-08
Identities = 61/268 (22%), Positives = 108/268 (39%), Gaps = 42/268 (15%)
Query: 44 VKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
+ CL S +VSGS+D ++++ K L TL+GH G + + + S
Sbjct: 998 ITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMS------------G 1045
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLM 163
++S S D + VW + TL+GHT+ + +H S VS S D ++R+W++
Sbjct: 1046 NIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSK--VVSGSRDATLRVWDIE 1103
Query: 164 TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFSRNTL 222
VL + VR +G I G + ++ I+ E + + N +
Sbjct: 1104 QGSCLHVLV-----GHLAAVRCVQYDGKLIVSGAYDYMVKIWHPERQECLHTLQGHTNRV 1158
Query: 223 MHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVKD 282
L+ DG ++V G +++ W +L+GH +
Sbjct: 1159 YSLQ---FDG-LHVVSGSLDTSIRVWDVE--------------TGNCKHTLMGHQSLTSG 1200
Query: 283 FQFYHNKFGHYLVTIGSDGRIVVWDMKT 310
+ N LV+ +D + VWD+ T
Sbjct: 1201 MELRQN----ILVSGNADSTVKVWDITT 1224
Score = 50.1 bits (118), Expect = 6e-06
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 38 QAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
Q H+ V L ++VSGS D +IR++D++ TL+GHQ S+T+ G
Sbjct: 1152 QGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQ-SLTS----------G 1200
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKG---HTARINDFDIHPSNRVAVSVSED 154
+++ N L+S + D + VW + + TL G H + + ++R V+ S+D
Sbjct: 1201 MELRQN-ILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQF--NSRFVVTSSDD 1257
Query: 155 HSIRLWNLMT 164
+++LW++ T
Sbjct: 1258 GTVKLWDVKT 1267
>Hs5803221 [A] KOG0306 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 943
Score = 62.4 bits (150), Expect = 1e-09
Identities = 40/123 (32%), Positives = 58/123 (46%), Gaps = 12/123 (9%)
Query: 40 HSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H L V C+DIS + +GS D N++I+ L +L H S+ L+F
Sbjct: 590 HKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQF-------- 641
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+ + +A +DHKI W +E+ TL+GH I + PS VS S D S+
Sbjct: 642 --VPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSHDKSL 699
Query: 158 RLW 160
RLW
Sbjct: 700 RLW 702
>7303687 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 704
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/131 (25%), Positives = 61/131 (45%), Gaps = 12/131 (9%)
Query: 37 FQAHSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
F H V C+ + Y+ +GS+D +R++D + + + GH+GS+++L FS
Sbjct: 530 FVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSA--- 586
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSED 154
++L S S DH II+W + + TL HT+ + V + D
Sbjct: 587 -------CGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSRDGTVLAAAGLD 639
Query: 155 HSIRLWNLMTV 165
+++ LW+ V
Sbjct: 640 NNLTLWDFHKV 650
>At1g11160 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 974
Score = 62.0 bits (149), Expect = 1e-09
Identities = 34/120 (28%), Positives = 59/120 (48%), Gaps = 10/120 (8%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
+L SGS+D N+R++D +K+ + T GH I+ + FS DG +W++S D
Sbjct: 63 FLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFS----PDG------RWVVSGGLD 112
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLK 172
+ + VW + + K H I D HP + + S D +++ W+L T + G +
Sbjct: 113 NVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTR 172
Score = 49.3 bits (116), Expect = 1e-05
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 54 LVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDH 113
+++G++ I+++DL++ K + GH+ + + + F ++L S S D
Sbjct: 22 VLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFH----------PFGEFLASGSSDT 71
Query: 114 KIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVK 166
+ VW + T KGHT I+ + P R VS D+ +++W+L K
Sbjct: 72 NLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGK 124
>7302979 [S] KOG0295 WD40 repeat-containing protein
Length = 411
Score = 62.0 bits (149), Expect = 1e-09
Identities = 63/277 (22%), Positives = 108/277 (38%), Gaps = 55/277 (19%)
Query: 38 QAHSLSVK--CLDISKRYLVSGSNDENIRIYDLQKRKE-LGTLLGHQGSITNLRFSRGKD 94
+ H+ SV+ D + L S S D +I+++D Q+ E + T+ GH +++++ F D
Sbjct: 147 KGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGD 206
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSED 154
++LSAS D I +W V T GH + +H + + S D
Sbjct: 207 ----------YVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSND 256
Query: 155 HSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHRE 214
+IR+W +T K ++LR + + + W E A +N+ + K H +
Sbjct: 257 QTIRVW--LTNSKDCKVELRDHEHTVECIAWAPE----AAASAINEAA--GADNKKGHHQ 308
Query: 215 IDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLL 274
F + G ++ W S +L
Sbjct: 309 GPF------------------LASGSRDKTIRIWDVS--------------VGLCLLTLS 336
Query: 275 GHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTR 311
GH N V+ F+ G YLV+ D I VWD++ +
Sbjct: 337 GHDNWVRGLAFHPG--GKYLVSASDDKTIRVWDLRNK 371
Score = 58.9 bits (141), Expect = 1e-08
Identities = 35/108 (32%), Positives = 53/108 (48%), Gaps = 10/108 (9%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
+L SGS D+ IRI+D+ L TL GH + L F G K+L+SAS+D
Sbjct: 311 FLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPG----------GKYLVSASDD 360
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLW 160
I VW +++ TL H D H ++ +S S D ++++W
Sbjct: 361 KTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVW 408
>YNL006w [R] KOG0315 G-protein beta subunit-like protein (contains WD40
repeats)
Length = 303
Score = 61.6 bits (148), Expect = 2e-09
Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 44/289 (15%)
Query: 54 LVSGSNDENIRIYDLQKRKE--LGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASE 111
L++ + +N+R+YD++ + + GH+G++T++ F Q N+W++++SE
Sbjct: 46 LLATAGHQNVRLYDIRTTNPNPVASFEGHRGNVTSVSFQ----------QDNRWMVTSSE 95
Query: 112 DHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL--------M 163
D I VW V+ K H A +N+ IHP+ +S D +IR+W+L +
Sbjct: 96 DGTIKVWDVRSPSIPRNYK-HNAPVNEVVIHPNQGELISCDRDGNIRIWDLGENQCTHQL 154
Query: 164 TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHREIDFSRNTLM 223
T + L+ +G + G+ + N T+ + + F ++
Sbjct: 155 TPEDDTSLQSLSMASDGSMLAAANTKGNCYVWEMPN-----HTDASHLKPVTKFRAHS-T 208
Query: 224 HLEREIIDGE-EYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVKD 282
++ R ++ + +++ + W + +L GH V D
Sbjct: 209 YITRILLSSDVKHLATCSADHTARVWSIDDDFKLET-------------TLDGHQRWVWD 255
Query: 283 FQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQVAVYDCGER-LNCVAVCD 330
F + YLVT SD + +WD+ TR+ V Y + CVA+ D
Sbjct: 256 CAF--SADSAYLVTASSDHYVRLWDLSTREIVRQYGGHHKGAVCVALND 302
>SPAC57A10.05c [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 605
Score = 61.6 bits (148), Expect = 2e-09
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 31 FTPIFHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFS 90
F + + HS V CL + L+SGS D+ IRI++ + + + L GH S+ L F
Sbjct: 303 FQQVALLEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTFD 362
Query: 91 RGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVS 150
+ L+S S D + +W + TL+GHT +N I + +S
Sbjct: 363 ------------STLLVSGSADCTVKLWHFSGGKRI-TLRGHTGPVNSVRIIRDRGLVLS 409
Query: 151 VSEDHSIRLWNLMT 164
S+D +I++W+L T
Sbjct: 410 GSDDSTIKIWSLET 423
>CE27762 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 585
Score = 61.6 bits (148), Expect = 2e-09
Identities = 57/267 (21%), Positives = 115/267 (42%), Gaps = 37/267 (13%)
Query: 44 VKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
+ C+ I LV+GS+D ++++ + K + + TL+GH G + + S Q
Sbjct: 257 ITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGVWTSQIS----------QCG 306
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLM 163
++++S S D + VW D TL+GHT+ + + + + V+ S D ++R+W++
Sbjct: 307 RYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAM--AGSILVTGSRDTTLRVWDVE 364
Query: 164 TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLN-KLLIFKTETAKVHREIDFSRNTL 222
+ + L + + VR +G+ + G + + I+ T + R + N +
Sbjct: 365 SGRHLATL-----HGHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRV 419
Query: 223 MHLEREIIDGEEYIVV-GLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVK 281
L + + E IV G +++ W ++ L GH++
Sbjct: 420 YSL---LFESERSIVCSGSLDTSIRVWDFTRPEGQECVAL-----------LQGHTSLTS 465
Query: 282 DFQFYHNKFGHYLVTIGSDGRIVVWDM 308
Q G+ LV+ +D + VWD+
Sbjct: 466 GMQLR----GNILVSCNADSHVRVWDI 488
Score = 61.6 bits (148), Expect = 2e-09
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 38 QAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
Q H+ +V+C+ ++ LV+GS D +R++D++ + L TL GH ++ ++F DG
Sbjct: 333 QGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQF------DG 386
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+ +S D + +W TL GH R+ + S S D SI
Sbjct: 387 TTV------VSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSI 440
Query: 158 RLWN 161
R+W+
Sbjct: 441 RVWD 444
>CE25007 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 587
Score = 61.6 bits (148), Expect = 2e-09
Identities = 57/267 (21%), Positives = 115/267 (42%), Gaps = 37/267 (13%)
Query: 44 VKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
+ C+ I LV+GS+D ++++ + K + + TL+GH G + + S Q
Sbjct: 259 ITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGVWTSQIS----------QCG 308
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLM 163
++++S S D + VW D TL+GHT+ + + + + V+ S D ++R+W++
Sbjct: 309 RYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAM--AGSILVTGSRDTTLRVWDVE 366
Query: 164 TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLN-KLLIFKTETAKVHREIDFSRNTL 222
+ + L + + VR +G+ + G + + I+ T + R + N +
Sbjct: 367 SGRHLATL-----HGHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRV 421
Query: 223 MHLEREIIDGEEYIVV-GLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVK 281
L + + E IV G +++ W ++ L GH++
Sbjct: 422 YSL---LFESERSIVCSGSLDTSIRVWDFTRPEGQECVAL-----------LQGHTSLTS 467
Query: 282 DFQFYHNKFGHYLVTIGSDGRIVVWDM 308
Q G+ LV+ +D + VWD+
Sbjct: 468 GMQLR----GNILVSCNADSHVRVWDI 490
Score = 61.6 bits (148), Expect = 2e-09
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 38 QAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
Q H+ +V+C+ ++ LV+GS D +R++D++ + L TL GH ++ ++F DG
Sbjct: 335 QGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQF------DG 388
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+ +S D + +W TL GH R+ + S S D SI
Sbjct: 389 TTV------VSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSI 442
Query: 158 RLWN 161
R+W+
Sbjct: 443 RVWD 446
>At5g49430 [R] KOG0644 Uncharacterized conserved protein contains WD40 repeat
and BROMO domains
Length = 1583
Score = 61.6 bits (148), Expect = 2e-09
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 34 IFHFQAHSLSVKC--LDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
I + H +V C LD S RY+++GS+D ++++ + L + GH+G IT+L S
Sbjct: 238 IKRLRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSS 297
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHP---SNRVA 148
N ++ SAS D I VWR+ D L+GHT + P S
Sbjct: 298 N----------NIFIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQL 347
Query: 149 VSVSEDHSIRLWN 161
+S S+D + R+W+
Sbjct: 348 LSSSDDGTCRIWD 360
>At2g41500 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 554
Score = 61.6 bits (148), Expect = 2e-09
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 34 IFHFQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
I FQ H V ++ S +L SG D RI+DL+ RK L + H ++ +++
Sbjct: 416 ILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKY-- 473
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSV 151
+ Q +L +AS D K+ +W +D+ +L GH +++ DI + +V
Sbjct: 474 -------EPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATV 526
Query: 152 SEDHSIRLW 160
S D +I+LW
Sbjct: 527 SHDRTIKLW 535
>7293972 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 553
Score = 61.2 bits (147), Expect = 2e-09
Identities = 32/130 (24%), Positives = 67/130 (50%), Gaps = 11/130 (8%)
Query: 34 IFHFQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
I + H +V +D S ++ +GS D +I+DL++R+ + T+ H I+++++ +
Sbjct: 430 IMFLEGHLGAVFGVDFSPNGFHIATGSQDNTCKIWDLRRRQPVYTIPAHTNLISDVKYQQ 489
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSV 151
+ +L++ S D +W K W+ TL+GH ++ DI P+++ +
Sbjct: 490 ---------ECGSFLVTCSYDSTTKIWSNKTWQPLKTLQGHDNKVISVDIAPNSQYIATT 540
Query: 152 SEDHSIRLWN 161
S D + +LW+
Sbjct: 541 SFDRTFKLWS 550
>At2g47410 [R] KOG0644 Uncharacterized conserved protein contains WD40 repeat
and BROMO domains
Length = 1389
Score = 60.5 bits (145), Expect = 4e-09
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 38 QAHSLSVKC--LDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDA 95
+ H +V C D S RY+++GS+D ++I+ ++ L + GH+G IT+L S
Sbjct: 233 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSN--- 289
Query: 96 DGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDH 155
N + SAS D I VWR+ D L+GHT + P + S+D
Sbjct: 290 -------NALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQ----ASSDDG 338
Query: 156 SIRLWN 161
+ R+W+
Sbjct: 339 TCRIWD 344
>At1g62020 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1216
Score = 60.5 bits (145), Expect = 4e-09
Identities = 39/141 (27%), Positives = 65/141 (45%), Gaps = 12/141 (8%)
Query: 32 TPIFHFQAHSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRF 89
T I F H V+ + S+ VSG +D I++++ + + L TLLGH I ++F
Sbjct: 42 TLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQF 101
Query: 90 SRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAV 149
W++SAS+D I +W + L GH + HP + V
Sbjct: 102 HHEYP----------WIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVV 151
Query: 150 SVSEDHSIRLWNLMTVKKAGV 170
S S D ++R+W++ ++K V
Sbjct: 152 SASLDQTVRVWDIGALRKKTV 172
>Hs16117781 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 707
Score = 60.1 bits (144), Expect = 6e-09
Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 42/268 (15%)
Query: 44 VKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
+ CL +VSGS+D ++++ K L TL+GH G + + + +
Sbjct: 384 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR------------D 431
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLM 163
++S S D + VW + E TL GHT+ + +H + VS S D ++R+W++
Sbjct: 432 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 489
Query: 164 TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFSRNTL 222
T + VL + VR +G + G + ++ ++ ET + N +
Sbjct: 490 TGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 544
Query: 223 MHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVKD 282
L+ + I ++V G +++ W +L GH +
Sbjct: 545 YSLQFDGI----HVVSGSLDTSIRVWDVE--------------TGNCIHTLTGHQSLTSG 586
Query: 283 FQFYHNKFGHYLVTIGSDGRIVVWDMKT 310
+ N LV+ +D + +WD+KT
Sbjct: 587 MELKDN----ILVSGNADSTVKIWDIKT 610
Score = 57.8 bits (138), Expect = 3e-08
Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 14/125 (11%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
H+ +V+C+ + ++ +VSGS D +R++D++ + L L+GH ++ +++ DG+
Sbjct: 460 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY------DGRR 513
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
+ +S + D + VW + TL+GHT R+ + + VS S D SIR+
Sbjct: 514 V------VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRV 565
Query: 160 WNLMT 164
W++ T
Sbjct: 566 WDVET 570
Score = 50.8 bits (120), Expect = 3e-06
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 32 TPIFHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
T + Q H+ V L ++VSGS D +IR++D++ + TL GHQ S+T+
Sbjct: 532 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTS----- 585
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKG---HTARINDFDIHPSNRVA 148
G +++ N L+S + D + +W +K + TL+G H + + +
Sbjct: 586 -----GMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFV 637
Query: 149 VSVSEDHSIRLWNLMT 164
++ S+D +++LW+L T
Sbjct: 638 ITSSDDGTVKLWDLKT 653
>Hs16117779 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 627
Score = 60.1 bits (144), Expect = 6e-09
Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 42/268 (15%)
Query: 44 VKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
+ CL +VSGS+D ++++ K L TL+GH G + + + +
Sbjct: 304 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR------------D 351
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLM 163
++S S D + VW + E TL GHT+ + +H + VS S D ++R+W++
Sbjct: 352 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 409
Query: 164 TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFSRNTL 222
T + VL + VR +G + G + ++ ++ ET + N +
Sbjct: 410 TGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 464
Query: 223 MHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVKD 282
L+ + I ++V G +++ W +L GH +
Sbjct: 465 YSLQFDGI----HVVSGSLDTSIRVWDVE--------------TGNCIHTLTGHQSLTSG 506
Query: 283 FQFYHNKFGHYLVTIGSDGRIVVWDMKT 310
+ N LV+ +D + +WD+KT
Sbjct: 507 MELKDN----ILVSGNADSTVKIWDIKT 530
Score = 57.8 bits (138), Expect = 3e-08
Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 14/125 (11%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
H+ +V+C+ + ++ +VSGS D +R++D++ + L L+GH ++ +++ DG+
Sbjct: 380 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY------DGRR 433
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
+ +S + D + VW + TL+GHT R+ + + VS S D SIR+
Sbjct: 434 V------VSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRV 485
Query: 160 WNLMT 164
W++ T
Sbjct: 486 WDVET 490
Score = 50.8 bits (120), Expect = 3e-06
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 32 TPIFHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
T + Q H+ V L ++VSGS D +IR++D++ + TL GHQ S+T+
Sbjct: 452 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTS----- 505
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKG---HTARINDFDIHPSNRVA 148
G +++ N L+S + D + +W +K + TL+G H + + +
Sbjct: 506 -----GMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFV 557
Query: 149 VSVSEDHSIRLWNLMT 164
++ S+D +++LW+L T
Sbjct: 558 ITSSDDGTVKLWDLKT 573
>CE05372 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 496
Score = 60.1 bits (144), Expect = 6e-09
Identities = 33/107 (30%), Positives = 57/107 (52%), Gaps = 10/107 (9%)
Query: 54 LVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDH 113
+++GS+D +++++DL+ R+ T+ H +T +R DA GQ +L+SAS D
Sbjct: 395 MITGSSDNSMKVWDLRMRRNTYTMPAHTSVVTRVR----ADAAGQ------YLVSASFDC 444
Query: 114 KIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLW 160
+ +W W+ L+GH RI DI P + S + D + +LW
Sbjct: 445 TLKMWSTTGWQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLW 491
>7290331 [R] KOG0266 WD40 repeat-containing protein
Length = 361
Score = 60.1 bits (144), Expect = 6e-09
Identities = 63/291 (21%), Positives = 126/291 (42%), Gaps = 32/291 (10%)
Query: 28 QPLFTPIFHFQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSIT 85
+P +T F H+ +V + S +L S S D+ I+I+ K T+ GH+ I+
Sbjct: 59 KPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 118
Query: 86 NLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSN 145
++ +S ++ L+S S+D + VW + ++ TLKGH+ + + +P +
Sbjct: 119 DVAWSSD----------SRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQS 168
Query: 146 RVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IF 204
+ VS S D S+R+W++ T K LK + + +GS I + L I+
Sbjct: 169 NLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 225
Query: 205 KTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXX 264
T + + + + N + + +G +YI+ ++ W SK
Sbjct: 226 DTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSK------------ 272
Query: 265 XXXXXXFSLLGHSN-RVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQV 314
+ GH N + F + G ++V+ D + +W++++++ V
Sbjct: 273 --GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVV 321
Score = 53.5 bits (127), Expect = 5e-07
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 52 RYLVSGSNDENIRIYDLQKRKELGTLLGHQGS----ITNLRFSRGKDADGQDIQLNKWLL 107
+Y+++ + D ++++D K K L T GH+ N + GK W++
Sbjct: 254 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-----------WIV 302
Query: 108 SASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVS--VSEDHSIRLW 160
S SED+ + +W ++ E L+GHT + HP+ + S + D +I+LW
Sbjct: 303 SGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLW 357
>YFL009w [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 779
Score = 59.7 bits (143), Expect = 7e-09
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 44 VKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
+ CL Y+++G++D+ IR+YD +K L L GH G + L+++ G
Sbjct: 385 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG----------- 433
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDI--HPSNRVAVSVSEDHSIRLWN 161
L+S S D + VW +K KGH + + DI + + + V+ S D+++ +W
Sbjct: 434 GILVSGSTDRTVRVWDIKKGCCTHVFKGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 493
Query: 162 L 162
L
Sbjct: 494 L 494
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 39/160 (24%)
Query: 37 FQAHSLSVKCLDISK----RYLVSGSNDENIRIYDLQKRKEL------------------ 74
F+ H+ +V+CLDI + +Y+V+GS D + ++ L K +
Sbjct: 459 FKGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 518
Query: 75 -----GTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTL 129
G L GH S+ R G + +S S D+ +IVW V + L
Sbjct: 519 NPYFVGVLRGHMASV------RTVSGHGNIV------VSGSYDNTLIVWDVAQMKCLYIL 566
Query: 130 KGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAG 169
GHT RI + +S S D +IR+W+L + G
Sbjct: 567 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENIWNNG 606
>CE29136 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1232
Score = 59.3 bits (142), Expect = 9e-09
Identities = 33/133 (24%), Positives = 62/133 (45%), Gaps = 12/133 (9%)
Query: 37 FQAHSLSVK--CLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
F H V+ C + VSG +D I++++ ++++ + TLLGH I F
Sbjct: 49 FDEHDGPVRGICFHHDQPIFVSGGDDYKIKVWNYKQKRCIFTLLGHLDYIRTTFFHHKYP 108
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSED 154
W++SAS+D + +W + + L GH + HP+ + S S D
Sbjct: 109 ----------WIISASDDQTVRIWNWQSRNSIAILTGHNHYVMCAQFHPTEDLVASASLD 158
Query: 155 HSIRLWNLMTVKK 167
++R+W++ ++K
Sbjct: 159 QTVRVWDISGLRK 171
>CE11748 [R] KOG0266 WD40 repeat-containing protein
Length = 395
Score = 58.9 bits (141), Expect = 1e-08
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 52 RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASE 111
+Y+++ + + ++++D QK + L GH+ S + A + KW++S SE
Sbjct: 288 KYILASNLNNTLKLWDYQKLRVLKEYTGHENSKYCV-------AANFSVTGGKWIVSGSE 340
Query: 112 DHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVS--VSEDHSIRLW 160
DHK+ +W ++ E TL GH + D HP + S + D I++W
Sbjct: 341 DHKVYIWNLQTREILQTLDGHNTAVMCTDCHPGQNIIASAALEPDMRIKIW 391
Score = 52.8 bits (125), Expect = 9e-07
Identities = 64/286 (22%), Positives = 118/286 (40%), Gaps = 37/286 (12%)
Query: 39 AHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDAD 96
AH S+ + S RY+ SGS D +I+I+ + E TL+GH+ I +S
Sbjct: 105 AHKKSISGIKFSPDGRYMGSGSADCSIKIWRMDFVYEK-TLMGHRLGINEFSWSSD---- 159
Query: 97 GQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHS 156
+K ++S S+D + V+ V TLKGHT + +PS + S S D +
Sbjct: 160 ------SKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDET 213
Query: 157 IRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAK-VHRE 214
IR+W + + +++ +G+Y+A G + ++ I+ + T V
Sbjct: 214 IRIW---CARNGNTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTL 270
Query: 215 IDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKL--YXXXXXXXXXXXXXXXXFS 272
ID + H+ + +YI+ + ++ W KL FS
Sbjct: 271 IDEEHPPITHV--KFSPNGKYILASNLNNTLKLWDYQKLRVLKEYTGHENSKYCVAANFS 328
Query: 273 LLGHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQVAVYD 318
+ G G ++V+ D ++ +W+++TR+ + D
Sbjct: 329 VTG---------------GKWIVSGSEDHKVYIWNLQTREILQTLD 359
>Hs16554627 [R] KOG0266 WD40 repeat-containing protein
Length = 334
Score = 58.5 bits (140), Expect = 2e-08
Identities = 64/291 (21%), Positives = 124/291 (41%), Gaps = 32/291 (10%)
Query: 28 QPLFTPIFHFQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSIT 85
+P + F H+ +V + S +L S S D+ I+I+ K T+ GH+ I+
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 86 NLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSN 145
++ +S + L+SAS+D + +W V + TLKGH+ + + +P +
Sbjct: 92 DVAWSSDSNL----------LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 141
Query: 146 RVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IF 204
+ VS S D S+R+W++ T K LK + + +GS I + L I+
Sbjct: 142 NLIVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 205 KTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXX 264
T + + + + N + + +G +YI+ ++ W SK
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSK------------ 245
Query: 265 XXXXXXFSLLGHSN-RVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQV 314
+ GH N + F + G ++V+ D + +W+++T++ V
Sbjct: 246 --GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Score = 53.1 bits (126), Expect = 7e-07
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 52 RYLVSGSNDENIRIYDLQKRKELGTLLGHQGS----ITNLRFSRGKDADGQDIQLNKWLL 107
+Y+++ + D ++++D K K L T GH+ N + GK W++
Sbjct: 227 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK-----------WIV 275
Query: 108 SASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVS--VSEDHSIRLW 160
S SED+ + +W ++ E L+GHT + HP+ + S + D +I+LW
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>Hs22052079 [R] KOG0266 WD40 repeat-containing protein
Length = 426
Score = 58.2 bits (139), Expect = 2e-08
Identities = 41/155 (26%), Positives = 78/155 (49%), Gaps = 27/155 (17%)
Query: 38 QAHSLSVK--CLDISKRYLVSGSNDENIRIYDLQ--KRKELGTLL----GHQGSITNLRF 89
+AHS ++ C S +L + S D+N++I+++ + + G + GH+GS+++ F
Sbjct: 270 KAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSSCHF 329
Query: 90 SRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAV 149
+R + +L+S D + +W V + +LKGH + D I + + +
Sbjct: 330 ARD----------SSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWIL 379
Query: 150 SVSEDHSIRLWNLMTV---------KKAGVLKLRK 175
S S+D ++RLWN+ + KKA LKL++
Sbjct: 380 SASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQ 414
>Hs21071067 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 800
Score = 58.2 bits (139), Expect = 2e-08
Identities = 33/133 (24%), Positives = 60/133 (44%), Gaps = 12/133 (9%)
Query: 31 FTPIFHFQAHSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLR 88
+ P+ F H V C + Y+ +GS D +R++D+ + GH+G I +L
Sbjct: 617 YQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLT 676
Query: 89 FSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVA 148
FS ++L + + D ++++W + G LKGHT + +
Sbjct: 677 FSPN----------GRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEIL 726
Query: 149 VSVSEDHSIRLWN 161
S S D+++RLW+
Sbjct: 727 ASGSMDNTVRLWD 739
Score = 50.4 bits (119), Expect = 4e-06
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 16/205 (7%)
Query: 51 KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSAS 110
+ YL+S S D +R++ LQ L GH + + +FS + +S
Sbjct: 555 RNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFS----------PYGYYFVSGG 604
Query: 111 EDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGV 170
D +W ++ GH A +N HP++ + S D ++RLW+++
Sbjct: 605 HDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL---NGNC 661
Query: 171 LKLRKYNQNGQFVRWCGENGSYIAVGLLN-KLLIFKTETAKVHREIDFSRNTLMHLEREI 229
+++ ++ NG ++A G + ++L++ + E+ +T+ L R
Sbjct: 662 VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSL-RFS 720
Query: 230 IDGEEYIVVGLNSGAVQFWKASKLY 254
DG E + G V+ W A K +
Sbjct: 721 RDG-EILASGSMDNTVRLWDAIKAF 744
>Hs21071065 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 745
Score = 58.2 bits (139), Expect = 2e-08
Identities = 33/133 (24%), Positives = 60/133 (44%), Gaps = 12/133 (9%)
Query: 31 FTPIFHFQAHSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLR 88
+ P+ F H V C + Y+ +GS D +R++D+ + GH+G I +L
Sbjct: 562 YQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLT 621
Query: 89 FSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVA 148
FS ++L + + D ++++W + G LKGHT + +
Sbjct: 622 FSPN----------GRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEIL 671
Query: 149 VSVSEDHSIRLWN 161
S S D+++RLW+
Sbjct: 672 ASGSMDNTVRLWD 684
>At3g49660 [R] KOG0266 WD40 repeat-containing protein
Length = 317
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/151 (29%), Positives = 74/151 (48%), Gaps = 20/151 (13%)
Query: 31 FTPIFHFQ---AHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKE-----LGTLLGH 80
FTP H Q +H+ +V + S R L S S D+ IR Y + + + GH
Sbjct: 11 FTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGH 70
Query: 81 QGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFD 140
+ I+++ FS DA ++++SAS+D + +W V+ TL GHT +
Sbjct: 71 ENGISDVAFS--SDA--------RFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVN 120
Query: 141 IHPSNRVAVSVSEDHSIRLWNLMTVKKAGVL 171
+P + + VS S D ++R+W++ T K VL
Sbjct: 121 FNPQSNMIVSGSFDETVRIWDVTTGKCLKVL 151
>SPAC4D7.03 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 703
Score = 57.8 bits (138), Expect = 3e-08
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 48/164 (29%)
Query: 37 FQAHSLSVKCLDI----------------SKRYLVSGSNDENIRIYDLQKRKE------- 73
F+ H ++CL+I + Y+VSGS D +R++ L K +
Sbjct: 427 FRGHISIIRCLEILVPSRLIRHGVEIVEPDQPYIVSGSRDHTLRVWKLPKNTDPPYLPDN 486
Query: 74 -------------LGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRV 120
+ TL+GH S+ + + DI L+S S D I +WRV
Sbjct: 487 TNSIDRWEKNPYFVHTLIGHTDSVRTI-------SGYGDI-----LVSGSYDSSIRIWRV 534
Query: 121 KDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
E L+GH+ RI P + +S S D SIR+W+L T
Sbjct: 535 STGECLYHLRGHSLRIYSVLYEPERNICISGSMDKSIRVWDLST 578
>Hs4557741 [S] KOG0295 WD40 repeat-containing protein
Length = 410
Score = 57.8 bits (138), Expect = 3e-08
Identities = 57/274 (20%), Positives = 104/274 (37%), Gaps = 42/274 (15%)
Query: 54 LVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDH 113
+VS S D I+++D + TL GH S+ ++ F K L S S D
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS----------GKLLASCSADM 172
Query: 114 KIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT-------VK 166
I +W + +E T+ GH ++ I P+ VS S D +I++W + T
Sbjct: 173 TIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 232
Query: 167 KAGVLKLRKYNQNGQFVRWCGENGSY-IAVGLLNKLLIFKTETAKVHREIDFSRNTLMHL 225
+++ + NQ+G + C + + + V + E V I ++ +
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 226 EREIIDGE--------EYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHS 277
E E +++ G ++ W S +L+GH
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS--------------TGMCLMTLVGHD 338
Query: 278 NRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTR 311
N V+ F+ G ++++ D + VWD K +
Sbjct: 339 NWVRGVLFHSG--GKFILSCADDKTLRVWDYKNK 370
Score = 55.5 bits (132), Expect = 1e-07
Identities = 30/108 (27%), Positives = 53/108 (48%), Gaps = 10/108 (9%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
+L+SGS D+ I+++D+ L TL+GH + + F G K++LS ++D
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG----------GKFILSCADD 359
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLW 160
+ VW K+ TL H + D H + V+ S D ++++W
Sbjct: 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>Hs18544419 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 446
Score = 57.8 bits (138), Expect = 3e-08
Identities = 34/137 (24%), Positives = 62/137 (44%), Gaps = 12/137 (8%)
Query: 37 FQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
F+ H+ + CL + + + +GS D +++D+Q +E+ TL GH I +L F+ D
Sbjct: 90 FRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGD 149
Query: 95 ADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSED 154
+++ S DH ++VW L GH A I+ + + ++ S D
Sbjct: 150 R----------IITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMD 199
Query: 155 HSIRLWNLMTVKKAGVL 171
+ +LW+ K L
Sbjct: 200 KTCKLWDATNGKCVATL 216
Score = 52.0 bits (123), Expect = 2e-06
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 36 HFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDA 95
H + + S+ LD+ + ++GS D +++D +EL TL GH+ + + F+
Sbjct: 7 HGELKTKSIDLLDLGPSF-ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNN---- 61
Query: 96 DGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDH 155
+ + S D +W V+ + + T +GHTA I +P + + + S D
Sbjct: 62 -----PYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDT 116
Query: 156 SIRLWNLMTVKKAGVLK 172
+ +LW++ ++ L+
Sbjct: 117 TAKLWDIQNGEEVYTLR 133
>ECU01g1290 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 983
Score = 57.8 bits (138), Expect = 3e-08
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 50 SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSA 109
SK ++SG + +IR +D Q + L H GS+ + F D + +S
Sbjct: 25 SKPVIISGHHSGSIRAWDYQMNVCIHEFLEHDGSVRAVLFHPRGD----------FFVSG 74
Query: 110 SEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVK 166
+D I VW + LKGH + D HP+ +S S+D +I +WN++T K
Sbjct: 75 GDDKIIRVWSYSERRVTNRLKGHDDFVRSLDFHPTKPWILSASDDQTIMVWNMLTGK 131
Score = 56.2 bits (134), Expect = 8e-08
Identities = 40/136 (29%), Positives = 63/136 (45%), Gaps = 13/136 (9%)
Query: 34 IFHFQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
I F H SV+ + R + VSG +D+ IR++ +R+ L GH + +L F
Sbjct: 49 IHEFLEHDGSVRAVLFHPRGDFFVSGGDDKIIRVWSYSERRVTNRLKGHDDFVRSLDFHP 108
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSV 151
K W+LSAS+D I+VW + + T +GH + + VS
Sbjct: 109 TKP----------WILSASDDQTIMVWNMLTGKLLATARGHCHYVMAARFLGEESI-VSG 157
Query: 152 SEDHSIRLWNLMTVKK 167
S D SIR+W+ +K+
Sbjct: 158 SLDQSIRVWDCKGLKE 173
>7292122 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1234
Score = 57.8 bits (138), Expect = 3e-08
Identities = 32/116 (27%), Positives = 56/116 (47%), Gaps = 10/116 (8%)
Query: 55 VSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHK 114
VSG +D I++++ ++R+ + TLL H + + F W+LSAS+D
Sbjct: 67 VSGGDDYKIKVWNYKQRRCIFTLLAHLDYVRTVAFHHEYP----------WILSASDDQT 116
Query: 115 IIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGV 170
I +W + L GH + HP+ VS S D ++R+W++ ++K V
Sbjct: 117 IRIWNWQSRNCICVLTGHNHYVMCAQFHPTEDQIVSASLDQTVRVWDISGLRKKNV 172
>SPCC18.05c [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 502
Score = 57.4 bits (137), Expect = 4e-08
Identities = 37/103 (35%), Positives = 54/103 (51%), Gaps = 12/103 (11%)
Query: 54 LVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDH 113
L SGS D +RI++++ R L TL GH IT +R+ GQ+ W+ S+S D
Sbjct: 242 LASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWG------GQN-----WIYSSSYDK 290
Query: 114 KIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHS 156
I +W KD + LKGH AR+N + + V S + DH+
Sbjct: 291 TIRIWDAKDGKCLHILKGHAARVNHLSL-STEHVLRSGAYDHT 332
Score = 52.0 bits (123), Expect = 2e-06
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 46 CLDISKRYLVSGSNDENIRIYDLQKR-KELGTLLGHQGSITNLRFSRGKDADGQDIQLNK 104
CL S LVS S+D + ++D QK K + + GHQ + + FS DG+ I
Sbjct: 353 CLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFS----PDGRCIA--- 405
Query: 105 WLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
+AS D + +W K + TL+GH A + +R+ VS S+D ++++W++ +
Sbjct: 406 ---TASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWDVRS 462
Query: 165 VK 166
K
Sbjct: 463 KK 464
>Hs13376840 [R] KOG4155 FOG: WD40 repeat
Length = 305
Score = 56.6 bits (135), Expect = 6e-08
Identities = 40/113 (35%), Positives = 60/113 (52%), Gaps = 10/113 (8%)
Query: 52 RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASE 111
+YL SG+ D I I+D+ K L TL GH I +L FS D QL L++AS+
Sbjct: 161 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-------PDSQL---LVTASD 210
Query: 112 DHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
D I ++ V+ GTL GH + + + P + VS S D S+++W++ T
Sbjct: 211 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 263
>CE29339 [S] KOG0295 WD40 repeat-containing protein
Length = 404
Score = 56.6 bits (135), Expect = 6e-08
Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 42/272 (15%)
Query: 54 LVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDH 113
+ S S D I+++D + + TL GH ++ ++ DA G K L+S S D
Sbjct: 121 MASCSEDATIKVWDYETGQLERTLKGHTDAVNDIAI----DAAG------KQLVSCSSDL 170
Query: 114 KIIVWRV-KDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLK 172
I +W + ++ +LKGH ++ P+ +S S DH+I+ W++ T V
Sbjct: 171 SIKLWDFGQTYDCLKSLKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDIST--GYCVYT 228
Query: 173 LRKYNQNGQFVRWCGENGSYIAVGLLNKLLI--FKTETAKV----HRE----IDFSRNT- 221
R +N + +R + + + L + + F T++AK+ H ++++ +T
Sbjct: 229 FRGHNDWVRMIRISNDGTLFASASLDQTVTVWSFATKSAKLVLRDHEHAVECVEWAPDTA 288
Query: 222 LMHLEREIIDGEEYIVV--GLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNR 279
++ + +G ++ G +++ W + F+LL H N
Sbjct: 289 YTNVTGQQPEGNSTHILFSGSRDRSIKAWNIN--------------TGDVLFTLLAHENW 334
Query: 280 VKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTR 311
V+ F+ G YL+++ D + VW++ +
Sbjct: 335 VRGLAFHPK--GKYLISVADDKTLRVWELSAQ 364
>CE00901 [R] KOG0266 WD40 repeat-containing protein
Length = 376
Score = 56.6 bits (135), Expect = 6e-08
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 52 RYLVSGSNDENIRIYDLQKRKELGTLLGHQGS----ITNLRFSRGKDADGQDIQLNKWLL 107
+Y+++ + D ++++D K K L GH+ S N + GK W++
Sbjct: 269 KYILASNLDSTLKLWDFSKGKTLKQYTGHENSKYCIFANFSVTGGK-----------WII 317
Query: 108 SASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVS--VSEDHSIRLW 160
S SED KI +W ++ E L+GHT + D HP + S + D+ I +W
Sbjct: 318 SGSEDCKIYIWNLQTREIVQCLEGHTQPVLASDCHPVQNIIASGALEPDNKIHIW 372
Score = 55.5 bits (132), Expect = 1e-07
Identities = 59/281 (20%), Positives = 121/281 (42%), Gaps = 32/281 (11%)
Query: 38 QAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDA 95
+ H+ S+ S +YL + S D+ ++I+++ TL GH+ + ++ +S
Sbjct: 84 EGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIAWSSD--- 140
Query: 96 DGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDH 155
++ ++SAS+D + ++ + TLKGH + + +P + + VS S D
Sbjct: 141 -------SRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDE 193
Query: 156 SIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHRE 214
S+R+W+ VK +K + + +GS IA G + L+ I+ T + +
Sbjct: 194 SVRIWD---VKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKT 250
Query: 215 IDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLL 274
+ N + + +G +YI+ ++ W SK
Sbjct: 251 LVDDENPPVAFVKFSPNG-KYILASNLDSTLKLWDFSK--------------GKTLKQYT 295
Query: 275 GHSN-RVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQV 314
GH N + F + G ++++ D +I +W+++TR+ V
Sbjct: 296 GHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTREIV 336
>ECU01g1300 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 423
Score = 56.2 bits (134), Expect = 8e-08
Identities = 52/193 (26%), Positives = 82/193 (41%), Gaps = 26/193 (13%)
Query: 37 FQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDAD 96
F H V + +YLVSGS D+ RI+DL L L+GH+ + +L+
Sbjct: 150 FVGHKGGVWTFMFNDKYLVSGSTDKTARIWDLWTGCTLCVLIGHKSVVRSLKI------- 202
Query: 97 GQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHS 156
+ ++ + S D +I +W + LKGHT + D+ S VS S D S
Sbjct: 203 -----YDDYIATGSRDAEIRIWNFRG-TCLNVLKGHTMSVRCMDMGES--YLVSGSYDGS 254
Query: 157 IRLWNLMTVKKAGVLK---LRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHR 213
+ LW+ K LK LR Y+ + SY+A G L+ + T K+
Sbjct: 255 VALWDYRRGKLLRYLKPHSLRVYS--------VSLSSSYVASGSLDSSVHVSTLDGKLQC 306
Query: 214 EIDFSRNTLMHLE 226
R+ ++ L+
Sbjct: 307 SYRIHRSLVIWLK 319
>CE06574 [R] KOG0266 WD40 repeat-containing protein
Length = 501
Score = 56.2 bits (134), Expect = 8e-08
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 46 CLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKW 105
C + +YL+S D +++++D +K K L GH+ L + + L K
Sbjct: 389 CFSPNGKYLLSAQLDSSLKLWDPKKAKPLKYYNGHKNKKYCLFAN-------MSVPLGKH 441
Query: 106 LLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVS--VSEDHSIRLW 160
++S SED +I+VW ++ + L+GHT + D HP+ + S + D+ IR+W
Sbjct: 442 IISGSEDGRILVWSIQTKQIVQILEGHTTPVLATDSHPTLNIIASGGLEPDNVIRIW 498
Score = 53.1 bits (126), Expect = 7e-07
Identities = 66/304 (21%), Positives = 123/304 (39%), Gaps = 56/304 (18%)
Query: 31 FTPIFHFQAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLR 88
F+ + H+ SV + S +YL +GS D+ I++++ L TL HQ I +
Sbjct: 203 FSLVKTISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFS 262
Query: 89 FSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVA 148
+S ++++ SAS+D + ++ V T++GHT + +P + +
Sbjct: 263 WSSN----------SQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLI 312
Query: 149 VSVSEDHSIRLWNLMT---VK----KAGVLKLRKYNQNGQFVRWCGENGSY----IAVGL 197
S D ++R+W+ T VK + + YN +G + +G A G
Sbjct: 313 ASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATSSYDGCIRVWDAASGS 372
Query: 198 LNKLLIFKTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKLYXXX 257
K L+ T+ A V + FS N +Y++ +++ W K
Sbjct: 373 CLKTLV-DTDHAPV-TFVCFSPN------------GKYLLSAQLDSSLKLWDPKKAKPLK 418
Query: 258 XXXXXXXXXXXXXFSLLGHSNRVKDFQFYHN---KFGHYLVTIGSDGRIVVWDMKTRDQV 314
GH N K + + N G ++++ DGRI+VW ++T+ V
Sbjct: 419 YYN--------------GHKN--KKYCLFANMSVPLGKHIISGSEDGRILVWSIQTKQIV 462
Query: 315 AVYD 318
+ +
Sbjct: 463 QILE 466
>Hs4759276 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 475
Score = 55.8 bits (133), Expect = 1e-07
Identities = 53/215 (24%), Positives = 78/215 (35%), Gaps = 60/215 (27%)
Query: 40 HSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
HS V C+ IS +YL SG + I I++ Q + L T GH+ +++ L F RG
Sbjct: 198 HSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQ-- 255
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
L S S D + VW V + TL GH + D + D ++
Sbjct: 256 --------LYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTV 307
Query: 158 RLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHREIDF 217
R+W K + Q V + G GS + L+N
Sbjct: 308 RVW--------------KIPEESQLV-FYGHQGSIDCIHLIN------------------ 334
Query: 218 SRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASK 252
EE++V G + G+V W SK
Sbjct: 335 ---------------EEHMVSGADDGSVALWGLSK 354
>YLR129w [A] KOG0306 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 943
Score = 55.5 bits (132), Expect = 1e-07
Identities = 68/343 (19%), Positives = 128/343 (36%), Gaps = 67/343 (19%)
Query: 32 TPIFHFQAHSLSVKCL--DISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRF 89
T + +F H ++ L D + L+SGS D NI ++DL L L H+ SIT +
Sbjct: 112 TVLLNFNGHKAAITLLQFDGTGTRLISGSKDSNIIVWDLVGEVGLYKLRSHKDSITGF-W 170
Query: 90 SRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAV 149
+G+D WL+S S+D I +W +K + T HT + + + + +
Sbjct: 171 CQGED----------WLISTSKDGMIKLWDLKTHQCIETHIAHTGEC--WGLAVKDDLLI 218
Query: 150 SVSEDHSIRLWNL--------MTVKKAGVLKLRKYNQNG---QFVRWCGENGSYIAVGLL 198
+ D +++W L + + G+ + ++ Q G +F+ + S+ +
Sbjct: 219 TTGTDSQVKIWKLDIENDKMGGKLTEMGIFE-KQSKQRGLKIEFITNSSDKTSFFYIQNA 277
Query: 199 NKLLIFKTETAKVHREIDFSRNTLMHLEREIIDG--EEYIVVGLNSGAVQ-----FWKAS 251
+K + ET ++ +E + +R +R G EE I + F
Sbjct: 278 DKTI----ETFRIRKEEEIARGLKKREKRLKEKGLTEEEIAKSIKESYSSFILHPFQTIR 333
Query: 252 KLYXXXXXXXXXXXXXXXXFSLLGHSNRVKDFQFYHNK---------------------- 289
LY L SN ++ + + K
Sbjct: 334 SLYKIKSASWTTVSSSKLELVLTTSSNTIEYYSIPYEKRDPTSPAPLKTHTIELQGQRTD 393
Query: 290 -------FGHYLVTIGSDGRIVVWDMKTRDQVAVYDCGERLNC 325
+ L+ S+G + +W++KT + ++CG L C
Sbjct: 394 VRSIDISDDNKLLATASNGSLKIWNIKTHKCIRTFECGYALTC 436
Score = 50.1 bits (118), Expect = 6e-06
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 40 HSLSVKCLDIS--KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H L V +DIS + +++ S D+NI+I+ L +L HQ SI N++F
Sbjct: 572 HKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKF-------- 623
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+ + S S+D + W + +E L H + + + VS S DHSI
Sbjct: 624 --LPQSHNFFSCSKDAVVKYWDGEKFECIQKLYAHQSEVWALAVATDGGFVVSSSHDHSI 681
Query: 158 RLW 160
R+W
Sbjct: 682 RIW 684
>YGL004c [R] KOG0266 WD40 repeat-containing protein
Length = 417
Score = 55.5 bits (132), Expect = 1e-07
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 38 QAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
+A +V + R + G+ + +I++ D + H IT L+F +A
Sbjct: 93 RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA-- 150
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
L+S+S+D ++ +W VKD N TL GH A + D I R +S S D +I
Sbjct: 151 --------LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI 202
Query: 158 RLWNLMT 164
RLW T
Sbjct: 203 RLWECGT 209
>YBR198c [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 798
Score = 55.5 bits (132), Expect = 1e-07
Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 50/296 (16%)
Query: 34 IFHFQAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQ-----------------KRKEL 74
++ FQ + + CLD S R +G D I+I+ L +
Sbjct: 459 MYTFQNTNKDMSCLDFSDDCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTC 518
Query: 75 GTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTA 134
TL+GH G++ + FS NK+LLS SED + +W + + KGH
Sbjct: 519 KTLVGHSGTVYSTSFSPD----------NKYLLSGSEDKTVRLWSMDTHTALVSYKGHNH 568
Query: 135 RINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIA 194
+ D P + S D + RLW+ + L++ + N NG Y+
Sbjct: 569 PVWDVSFSPLGHYFATASHDQTARLWSCDHIYP---LRIFAGHLNDVDCVSFHPNGCYVF 625
Query: 195 VGLLNKLL-IFKTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKASKL 253
G +K ++ T R F +T + + ++ G G + W
Sbjct: 626 TGSSDKTCRMWDVSTGDSVRL--FLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIG-- 681
Query: 254 YXXXXXXXXXXXXXXXXFSLLGHSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMK 309
+ GH + ++K G+ L++ G+D + VWD+K
Sbjct: 682 ------------TGKRLKQMRGHGKNA-IYSLSYSKEGNVLISGGADHTVRVWDLK 724
Score = 52.4 bits (124), Expect = 1e-06
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 33 PIFHFQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFS 90
P+ F H V C+ Y+ +GS+D+ R++D+ + LGH + ++
Sbjct: 601 PLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVC 660
Query: 91 RGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTAR-INDFDIHPSNRVAV 149
DG +WL + SED I VW + + ++GH I V +
Sbjct: 661 ----PDG------RWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLI 710
Query: 150 SVSEDHSIRLWNL 162
S DH++R+W+L
Sbjct: 711 SGGADHTVRVWDL 723
>SPAC227.12 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 462
Score = 55.5 bits (132), Expect = 1e-07
Identities = 55/260 (21%), Positives = 106/260 (40%), Gaps = 29/260 (11%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRF---SRGKDADGQDIQLNKWLLSA 109
+ SGS +++++ E+ GH ++ L + + DAD + + L +
Sbjct: 186 HFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTL----ATG 241
Query: 110 SEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAG 169
+ D+ + +W+ L+GH AR+ HPS VS S D + RLW++ T G
Sbjct: 242 AADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHT----G 297
Query: 170 V-LKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVHREIDF-SRNTLMHLER 227
V L +++ + G F C +GS ++ G + R D S ++M L+
Sbjct: 298 VELLMQEGHSEGIFSIACQPDGSLVSSG----------GNDAIGRIWDLRSGKSIMVLDE 347
Query: 228 EIIDGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLGHSNRVKDFQFYH 287
I + + + + Q +S ++ HS+ V D ++
Sbjct: 348 HI---RQIVAMAWSPNGYQLATSS---ADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIE 401
Query: 288 NKFGHYLVTIGSDGRIVVWD 307
+ ++ T G DG + +W+
Sbjct: 402 SGVNRFIATSGYDGCVKLWN 421
>Hs4758558 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 522
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
++ +GS D +++DL++R+ + T+ HQ +T ++F + I N +LL+ + D
Sbjct: 421 HIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKF--------EPIHGN-FLLTGAYD 471
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLW 160
+ +W W TL GH ++ DI ++ + S D + +LW
Sbjct: 472 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 519
>YJL112w [R] KOG4155 FOG: WD40 repeat
Length = 714
Score = 55.1 bits (131), Expect = 2e-07
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 27 TQPLFTPIFH-FQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSI- 84
T + +P H F+AH+ V L + +LVSGS D IR +DL+ K L T+ ++
Sbjct: 487 TNHIDSPCVHTFEAHTDEVTALSLDPSFLVSGSQDRTIRQWDLRSGKCLQTIDLSFANVL 546
Query: 85 ---TNLRFSRG--------KDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHT 133
TN+ S+ + + G + L + ++D + +W ++ + TLKGHT
Sbjct: 547 TTSTNVDLSKSTLLTQRNERPSIGALQSFDAALATGTKDGVVRLWDLRSGKVIRTLKGHT 606
Query: 134 ARINDFDIHPSNRVAVSVSEDHSIRLWNLMT-------VKKAGVLKLRKYNQNGQFV 183
I + V+ S D ++R+W+L T A VL L + +N V
Sbjct: 607 DAITSLKF--DSACLVTGSYDRTVRIWDLRTGLLNKFHAYSAPVLSLDLFQENAAVV 661
>SPBPJ4664.04 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1207
Score = 55.1 bits (131), Expect = 2e-07
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 55 VSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHK 114
VSG +D + +++ + RK L +L GH + F W+LS S+D
Sbjct: 69 VSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYP----------WILSCSDDQT 118
Query: 115 IIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL--MTVKKAGVLK 172
I +W + L GH+ + HPS + VS S D ++R+W++ + +K A +
Sbjct: 119 IRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVS 178
Query: 173 LRKYNQNGQ 181
+ +Q Q
Sbjct: 179 MSLEDQLAQ 187
Score = 50.4 bits (119), Expect = 4e-06
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 38/219 (17%)
Query: 40 HSLSVKCLDI--SKRYLVSGSNDENIRIYDLQKRKELGT----------LLGHQGSITNL 87
HS V C S+ +VS S D+ +R++D+ + L SI+N
Sbjct: 136 HSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVSMSLEDQLAQAHNSISND 195
Query: 88 RFSRGKDA------DGQDIQLNKW---------LLSASEDHKIIVWRV---KDWENFGTL 129
F DA +G D +N W +LSA +D + +WR+ K WE T
Sbjct: 196 LFG-STDAIVKFVLEGHDRGVN-WCAFHPTLPLILSAGDDRLVKLWRMTASKAWE-VDTC 252
Query: 130 KGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGEN 189
+GH ++ HP + +S SED +IR+W+L ++ V R+ N F+
Sbjct: 253 RGHFNNVSCCLFHPHQELILSASEDKTIRVWDLN--RRTAVQTFRRDNDRFWFIT-VHPK 309
Query: 190 GSYIAVGLLNKLLIFKTETAKVHREIDFSRNTLMHLERE 228
+ A + +++FK E + ++ NTL+++ +E
Sbjct: 310 LNLFAAAHDSGVMVFKLERERPAHALNI--NTLLYVNKE 346
>7296187 [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 481
Score = 55.1 bits (131), Expect = 2e-07
Identities = 40/149 (26%), Positives = 74/149 (48%), Gaps = 13/149 (8%)
Query: 54 LVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDH 113
LVS S+D + ++ + K + + GHQ + ++++S D++L + SAS D
Sbjct: 341 LVSCSDDNTLYLWRNNQNKCVERMTGHQNVVNDVKYS-------PDVKL---IASASFDK 390
Query: 114 KIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKL 173
+ +WR D + T +GH + +R+ VS S+D ++++W++ T K A L
Sbjct: 391 SVRLWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSGSKDSTLKVWSVQTKKLAQELPG 450
Query: 174 RKYNQNGQFVRWCGENGSYIAVGLLNKLL 202
G V W +GS +A G +K++
Sbjct: 451 HADEVFG--VDW-APDGSRVASGGKDKVI 476
>YPL183c [R] KOG0974 WD-repeat protein WDR6 WD repeat superfamily
Length = 1013
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/120 (27%), Positives = 59/120 (48%), Gaps = 10/120 (8%)
Query: 44 VKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
+K K Y+ +G+ + I+DL ++ LLGH+GSI + S
Sbjct: 142 IKVFGPDKVYVNAGTVMGGVIIWDLFSETKIHNLLGHEGSIFYVNLSNN----------G 191
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLM 163
+++ S S+D I +W ++ + HTARI + ++ +SVSED + R+WN++
Sbjct: 192 RYVASCSDDRSIRLWDLETGKQLSVGWSHTARIWNLMFFDNDSKLISVSEDCTCRVWNII 251
>At3g21540 [A] KOG0306 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 949
Score = 54.7 bits (130), Expect = 2e-07
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 41 SLSVKCLDISKRYLVS-GSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
SL+V + S LV+ G D +IRI+D +K H+G++T LR+++
Sbjct: 65 SLAVTSIASSASSLVAVGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNK-------- 116
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRL 159
+ L S S+D+ II+W V L+GH ++ D + VS S+D +R+
Sbjct: 117 --VGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRV 174
Query: 160 WNLMT 164
W+L T
Sbjct: 175 WDLET 179
Score = 54.3 bits (129), Expect = 3e-07
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 40 HSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H L V C+DIS +V+GS D+N++I+ L ++ H S+ ++F R
Sbjct: 574 HKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKFVRN----- 628
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+L S +D + W +E+ TL+GH A I I V+ S D S+
Sbjct: 629 -----THYLFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSM 683
Query: 158 RLWN 161
R W+
Sbjct: 684 RRWD 687
Score = 53.9 bits (128), Expect = 4e-07
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 36 HFQAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGK 93
+F +H +V L +K L SGS D +I ++D+ L L GH+ +T+L F G
Sbjct: 101 NFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDG- 159
Query: 94 DADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSE 153
K L+S+S+D + VW ++ + GH + + D P R V+ S
Sbjct: 160 ---------GKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDTDPEERYVVTGSA 210
Query: 154 DHSIRLWNLMTVKKAGVLKLRKYNQNGQFV 183
D +R + +++Y+ NG V
Sbjct: 211 DQELRFY-----------AVKEYSSNGSLV 229
>7303128 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 774
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 38 QAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
++H +S+ CL +YL +I+I+ Q K + TL GH+ S+ L F +G
Sbjct: 214 RSHVISI-CLSSDMKYLALAEGGPHIQIWCPQTMKHIKTLKGHRDSVAGLVFRKGTHD-- 270
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
L SA++D + +W + + +L GH + D R + D S+
Sbjct: 271 --------LYSAAKDRSVKIWSLDEMAYVESLFGHQTAVTSIDALSRERAITAGGSDCSL 322
Query: 158 RLWNL 162
R+W +
Sbjct: 323 RIWKI 327
>7290824 [DK] KOG0973 Histone transcription regulator HIRA WD repeat
superfamily
Length = 1047
Score = 54.3 bits (129), Expect = 3e-07
Identities = 43/144 (29%), Positives = 65/144 (44%), Gaps = 30/144 (20%)
Query: 40 HSLSVKCLDISK--RYLVSGSNDENIRIY-------------DLQKRKE----LGTLLGH 80
H V C+ S+ + L SGS+D+ I I+ +QK E TL GH
Sbjct: 69 HLACVNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGH 128
Query: 81 QGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDW-ENFGTLKGHTARINDF 139
G + +L +S + +L S S D+ +I+W + + + TLKGHT +
Sbjct: 129 DGDVLDLAWSPN----------DVYLASCSIDNTVIIWDAQAFPHSVATLKGHTGLVKGV 178
Query: 140 DIHPSNRVAVSVSEDHSIRLWNLM 163
P R S S+D SI++WN M
Sbjct: 179 SWDPLGRFLASQSDDRSIKIWNTM 202
>At1g52360 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 926
Score = 53.9 bits (128), Expect = 4e-07
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 37 FQAHSLSVKCLDISKR---YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGK 93
F+ HS V + + + S S D I+I++L TL HQ + + + G
Sbjct: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
Query: 94 DADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSE 153
D +L++ S+DH VW + TL+GHT ++ HP + ++ SE
Sbjct: 198 D--------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249
Query: 154 DHSIRLWNLMTVKKAGVL 171
D ++R+W+ T + L
Sbjct: 250 DGTVRIWHATTYRLENTL 267
>SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein
Length = 614
Score = 53.5 bits (127), Expect = 5e-07
Identities = 50/179 (27%), Positives = 81/179 (44%), Gaps = 27/179 (15%)
Query: 34 IFHFQAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGS-------- 83
+ H H V C+ S +YL +G N + ++D+Q K+L TL H+ S
Sbjct: 306 LVHTLEHPSVVCCVKFSNNGKYLATGCN-QAANVFDVQTGKKLFTL--HEESPDPSRDLY 362
Query: 84 ITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHP 143
+ + FS DG K+L++ +ED +I +W + + GH I D
Sbjct: 363 VRTIAFS----PDG------KYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSH 412
Query: 144 SNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL 202
+ R VS S D + RLW++ T G L+ +NG N +IAVG L++++
Sbjct: 413 NGRFIVSGSGDRTARLWDVET----GQCILKLEIENGVTAIAISPNDQFIAVGSLDQII 467
>CE16234 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 417
Score = 53.1 bits (126), Expect = 7e-07
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 32 TPIFHFQAHSLSVKCLDI---SKRYLVSGSNDENIRIYDLQK-RKELGTLLGHQGSITNL 87
TP AHS V CL S+ L +GS D+ + ++DL+ R +L + H+ I +
Sbjct: 256 TPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRDEIFQV 315
Query: 88 RFSRGKD----ADGQDIQLNKWLLSA-SEDHKIIVWRVKDWENFGTLKGHTARINDFDIH 142
++S + + G D +L+ W LS ED E GHTA+I+DF +
Sbjct: 316 QWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSWN 375
Query: 143 PSNR-VAVSVSEDHSIRLWNL 162
P+ V SVSED+ +++W +
Sbjct: 376 PNEPWVVCSVSEDNILQVWQM 396
>YPL151c [A] KOG0285 Pleiotropic regulator 1
Length = 451
Score = 52.8 bits (125), Expect = 9e-07
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 44 VKCLDIS---KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDI 100
V+C+ I + ++GSND ++++DL K TL GH ++ ++ S
Sbjct: 142 VRCVAIDPVDNEWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDVAVS---------- 191
Query: 101 QLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLW 160
+ +L S SED + W ++ + GH + + IHP+ + + D I+LW
Sbjct: 192 DRHPYLFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIATAGRDSVIKLW 251
Query: 161 NLMT 164
++ T
Sbjct: 252 DMRT 255
Score = 51.6 bits (122), Expect = 2e-06
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 40 HSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H ++V+ + +S R YL S S D+ ++ +DL+K + + GH + + D
Sbjct: 181 HVMTVRDVAVSDRHPYLFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDL-- 238
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+ +A D I +W ++ TL GH IN P + VS S D ++
Sbjct: 239 --------IATAGRDSVIKLWDMRTRIPVITLVGHKGPINQVQCTPVDPQVVSSSTDATV 290
Query: 158 RLWNLMTVKKAGVLKLRK 175
RLW+++ K VL K
Sbjct: 291 RLWDVVAGKTMKVLTHHK 308
>Hs9506645 [R] KOG0266 WD40 repeat-containing protein
Length = 330
Score = 52.8 bits (125), Expect = 9e-07
Identities = 30/97 (30%), Positives = 50/97 (50%), Gaps = 10/97 (10%)
Query: 76 TLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTAR 135
TL+GH ++++++FS +WL S+S D II+W D + TL GH
Sbjct: 36 TLVGHTEAVSSVKFSPN----------GEWLASSSADRLIIIWGAYDGKYEKTLYGHNLE 85
Query: 136 INDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLK 172
I+D + VS S+D +++LW++ + K LK
Sbjct: 86 ISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLK 122
Score = 49.7 bits (117), Expect = 7e-06
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
+L S S D I I+ K TL GH I+++ +S L+SAS+D
Sbjct: 55 WLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSR----------LVSASDD 104
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVK 166
+ +W V+ + TLKGH+ + + +P + + +S S D ++++W + T K
Sbjct: 105 KTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGK 158
>Hs4758032 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 906
Score = 52.8 bits (125), Expect = 9e-07
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 37 FQAHSLSVKCLDISKR---YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGK 93
F+ H+ V + I+ + S S D I+++ L TL GH+ + + + G
Sbjct: 138 FEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGG 197
Query: 94 DADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSE 153
D +L+S ++D + +W ++ TL+GH ++ HP + ++ SE
Sbjct: 198 D--------KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSE 249
Query: 154 DHSIRLWNLMTVKKAGVL 171
D ++R+W+ T + L
Sbjct: 250 DGTVRIWHSSTYRLESTL 267
>Hs4505895 [A] KOG0285 Pleiotropic regulator 1
Length = 514
Score = 52.8 bits (125), Expect = 9e-07
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 44 VKCLDIS--KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQ 101
V+C+ + ++ V+GS D I+I+DL K +L GH ++ + S
Sbjct: 207 VRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTR--------- 257
Query: 102 LNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWN 161
+ +L S ED ++ W ++ + GH + + D+HP+ V V+ S D + R+W+
Sbjct: 258 -SPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWD 316
Query: 162 LMT 164
+ T
Sbjct: 317 VRT 319
>At3g15980 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 921
Score = 52.8 bits (125), Expect = 9e-07
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 56 SGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKI 115
S S D I+I++L TL HQ + + + G D +L++ S+DH
Sbjct: 163 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD--------KPYLITGSDDHTA 214
Query: 116 IVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVL 171
VW + TL GHT ++ HP + ++ SED ++R+W+ T + L
Sbjct: 215 KVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 270
>YCR072c [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 515
Score = 52.4 bits (124), Expect = 1e-06
Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 11/118 (9%)
Query: 50 SKRYLVSGSNDENIRIYD-LQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLS 108
S+ +V+ S+D + +++ L+ K + + GHQ + ++ FS DG ++++S
Sbjct: 370 SEEMMVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFS----PDG------RYIVS 419
Query: 109 ASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVK 166
AS D+ I +W +D + T +GH A + R+ VS S+D ++++W++ T K
Sbjct: 420 ASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDVRTRK 477
>HsM7219910 [DK] KOG0973 Histone transcription regulator HIRA WD repeat
superfamily
Length = 1017
Score = 52.4 bits (124), Expect = 1e-06
Identities = 35/136 (25%), Positives = 59/136 (42%), Gaps = 12/136 (8%)
Query: 40 HSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLR------FSR 91
H V C+ S YL SG +D+ I ++ T+ G G + N+ R
Sbjct: 69 HLACVNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCVSILR 128
Query: 92 GKDADGQDIQLNK---WLLSASEDHKIIVWR-VKDWENFGTLKGHTARINDFDIHPSNRV 147
D D+ + WL S S D+ +++W VK E TL+GH+ + P +
Sbjct: 129 NHSGDVMDVAWSPHDAWLASCSVDNTVVIWNAVKFPEILATLRGHSGLVKGLTWDPVGKY 188
Query: 148 AVSVSEDHSIRLWNLM 163
S ++D S+++W +
Sbjct: 189 IASQADDRSLKVWRTL 204
>Hs21536485 [DK] KOG0973 Histone transcription regulator HIRA WD repeat
superfamily
Length = 1017
Score = 52.4 bits (124), Expect = 1e-06
Identities = 35/136 (25%), Positives = 59/136 (42%), Gaps = 12/136 (8%)
Query: 40 HSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLR------FSR 91
H V C+ S YL SG +D+ I ++ T+ G G + N+ R
Sbjct: 69 HLACVNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCVSILR 128
Query: 92 GKDADGQDIQLNK---WLLSASEDHKIIVWR-VKDWENFGTLKGHTARINDFDIHPSNRV 147
D D+ + WL S S D+ +++W VK E TL+GH+ + P +
Sbjct: 129 NHSGDVMDVAWSPHDAWLASCSVDNTVVIWNAVKFPEILATLRGHSGLVKGLTWDPVGKY 188
Query: 148 AVSVSEDHSIRLWNLM 163
S ++D S+++W +
Sbjct: 189 IASQADDRSLKVWRTL 204
>At1g79990 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 913
Score = 52.4 bits (124), Expect = 1e-06
Identities = 35/138 (25%), Positives = 61/138 (43%), Gaps = 11/138 (7%)
Query: 37 FQAHSLSVKCLDISKR---YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGK 93
F+ HS V + + + S S D I+I++L TL H + + + G
Sbjct: 131 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGG 190
Query: 94 DADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSE 153
D +L++ S+DH VW + TL+GHT ++ HP + ++ SE
Sbjct: 191 D--------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSE 242
Query: 154 DHSIRLWNLMTVKKAGVL 171
D ++R+W+ T + L
Sbjct: 243 DGTVRIWHATTYRLENTL 260
>7302600 [R] KOG4155 FOG: WD40 repeat
Length = 1240
Score = 52.4 bits (124), Expect = 1e-06
Identities = 32/124 (25%), Positives = 59/124 (46%), Gaps = 11/124 (8%)
Query: 39 AHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDAD 96
+HS + C +IS +++SGS D +++++ K L+GH ++T + S
Sbjct: 904 SHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVS------ 957
Query: 97 GQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHS 156
+ +LS S+D +I+W + E TL GH + + AVS S+D +
Sbjct: 958 ---VTNKTQVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKT 1014
Query: 157 IRLW 160
+ +W
Sbjct: 1015 LIVW 1018
Score = 49.3 bits (116), Expect = 1e-05
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 40 HSLSVKCLDIS---KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDAD 96
HS +V C+ +S K ++SGS D N+ ++DL +E+ TL GH G + ++ S AD
Sbjct: 947 HSDAVTCVAVSVTNKTQVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVS----AD 1002
Query: 97 GQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIH-PSNRVAVSVSEDH 155
G +S S+D +IVW K +L+ H FDI +RV V + + +
Sbjct: 1003 GSTA------VSGSDDKTLIVWETKRGLALTSLQMHVP-FTHFDISLEVSRVLVQLVDSY 1055
Query: 156 SI 157
++
Sbjct: 1056 NL 1057
>Hs4506439 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 425
Score = 52.0 bits (123), Expect = 2e-06
Identities = 42/134 (31%), Positives = 67/134 (49%), Gaps = 10/134 (7%)
Query: 39 AHSLSVKCLDI---SKRYLVSGSNDENIRIYDLQKRK-ELGTLLGHQGSITNLRFSRGKD 94
AH+ V CL S+ L +GS D+ + ++DL+ K +L T H+ I + +S +
Sbjct: 270 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 329
Query: 95 ----ADGQDIQLNKWLLS-ASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNR-VA 148
+ G D +LN W LS E+ E GHTA+I+DF +P+ V
Sbjct: 330 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 389
Query: 149 VSVSEDHSIRLWNL 162
SVSED+ +++W +
Sbjct: 390 CSVSEDNIMQIWQM 403
>7299285 [R] KOG4155 FOG: WD40 repeat
Length = 331
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/125 (25%), Positives = 60/125 (47%), Gaps = 12/125 (9%)
Query: 38 QAHSLSVK--CLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDA 95
+ H++ V+ C + + L++ S+D ++++YD+ +GTL GH + + FS
Sbjct: 209 EGHAMPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSDVVGTLSGHASWVLCVAFSE---- 264
Query: 96 DGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDH 155
DG K S+S D+ + +W + + T HT ++ P N S SED
Sbjct: 265 DG------KHFASSSSDNSVKIWDTSERKCLHTFAEHTDQVWGVRYSPGNDKVASASEDK 318
Query: 156 SIRLW 160
S+ ++
Sbjct: 319 SLNIY 323
>7297878 [K] KOG1034 Transcriptional repressor EED/ESC/FIE required for
transcriptional silencing WD repeat superfamily
Length = 425
Score = 52.0 bits (123), Expect = 2e-06
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 63 IRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKD 122
IR+ D+++ + +G +GH +I L+F K +QL LLS S+DH I +W ++
Sbjct: 152 IRVIDVEQNEAVGNYIGHGQAINELKFHPHK------LQL---LLSGSKDHAIRLWNIQS 202
Query: 123 W---ENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
G ++GH + D + VS DHS++LW L T
Sbjct: 203 HVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNT 247
>SPAC630.14c [R] KOG0266 WD40 repeat-containing protein
Length = 586
Score = 51.6 bits (122), Expect = 2e-06
Identities = 43/168 (25%), Positives = 66/168 (38%), Gaps = 20/168 (11%)
Query: 2 PDNQFRIIVGSYEHXXXXXXXXXXXTQPLFTPIFHFQAHSLSVKCLDISKRYLVSGSNDE 61
PD QF I GS + + L H S+ +YLVSGS D
Sbjct: 427 PDGQF-IAAGSLDKVIRIWTSSGTLVEQL-----HGHEESVYSVAFSPDGKYLVSGSLDN 480
Query: 62 NIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD--------ADGQDIQLNKWLLSASEDH 113
I++++LQ + + +G I F+ KD DG KW++S S+D
Sbjct: 481 TIKLWELQCVSNVAPSMYKEGGICKQTFTGHKDFILSVTVSPDG------KWIISGSKDR 534
Query: 114 KIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWN 161
I W + TL+GH + + P+ + S D R+W+
Sbjct: 535 TIQFWSPDSPHSQLTLQGHNNSVISVAVSPNGHCFATGSGDLRARIWS 582
Score = 50.8 bits (120), Expect = 3e-06
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 29/231 (12%)
Query: 29 PLFTPIFHFQAHSLSVKC---LDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGS-- 83
P+ + H H+ SV C ++L +G N + +++++ K L TLL + S
Sbjct: 275 PISVQLLHTLEHT-SVICYVRFSADGKFLATGCNRAAM-VFNVETGK-LITLLQEESSKR 331
Query: 84 -----ITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARIND 138
+ ++ FS DG K+L + ED +I +W + + L GH I
Sbjct: 332 EGDLYVRSVAFS----PDG------KYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYS 381
Query: 139 FDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLL 198
D + VS S D ++ LW++ +AG KL + +G +G +IA G L
Sbjct: 382 LDFSKDGKTLVSGSGDRTVCLWDV----EAGEQKLILHTDDGVTTVMFSPDGQFIAAGSL 437
Query: 199 NKLLIFKTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWK 249
+K++ T + + ++ ++ + DG +Y+V G ++ W+
Sbjct: 438 DKVIRIWTSSGTLVEQLHGHEESVYSVAFS-PDG-KYLVSGSLDNTIKLWE 486
>Hs13376751 [R] KOG0266 WD40 repeat-containing protein
Length = 392
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/192 (28%), Positives = 75/192 (38%), Gaps = 26/192 (13%)
Query: 40 HSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H+ S+ CLDIS R VS S D ++I+ + L GH + RF
Sbjct: 91 HTKSITCLDISSRGGLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRF-------- 142
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
+LS D ++ +W +D T KGH I D I R VS S D +
Sbjct: 143 --FPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVDRGRNVVSASRDGTA 200
Query: 158 RLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLL-NKLLIFKTETAKVHREID 216
RLW+ GVL CG + + +AVG N + + E RE+
Sbjct: 201 RLWDCGRSACLGVL------------ADCGSSINGVAVGAADNSINLGSPEQMPSEREVG 248
Query: 217 FSRNTLMHLERE 228
L+ L RE
Sbjct: 249 TEAKMLL-LARE 259
>ECU08g1250 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 759
Score = 51.6 bits (122), Expect = 2e-06
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 17/129 (13%)
Query: 48 DISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLL 107
D SK VS S D ++++ +++ + T GH I ++ F G+D L+
Sbjct: 190 DASK--FVSCSLDSTVKVWSVEQPHCVKTFKGHTSGINSICFL-GRDC----------LV 236
Query: 108 SASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAV--SVSEDHSIRLWNLMTV 165
S ++D + VW + + TL GHT IN ++P N ++ S ED S+RLWN T
Sbjct: 237 SGADDLTLKVWDFQTAQCITTLSGHTNNINK--VYPLNSFSLFASCGEDGSMRLWNNKTF 294
Query: 166 KKAGVLKLR 174
K+ +L L+
Sbjct: 295 KQEDLLILQ 303
>SPBC21B10.05c [R] KOG0315 G-protein beta subunit-like protein (contains WD40
repeats)
Length = 314
Score = 51.2 bits (121), Expect = 3e-06
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 46 CLDISKRYLVSGSNDENIRIYDLQKRKE--LGTLLGHQGSITNLRFSRGKDADGQDIQLN 103
C+ K++L + N ++R+YD+ + L T GH ++T + F DG
Sbjct: 47 CISPDKKFLAAAGNP-HVRLYDINTSSQMPLMTFEGHTNNVTAIAFH----CDG------ 95
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNL 162
KWL ++SED + VW ++ + H + +ND IHP+ +S + +R W+L
Sbjct: 96 KWLATSSEDGTVKVWDMRA-PSVQRNYDHKSPVNDLLIHPNQGELLSCDQSGRVRAWDL 153
>SPAC4D7.05 [JT] KOG0643 Translation initiation factor 3 subunit i
(eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1)
Length = 328
Score = 51.2 bits (121), Expect = 3e-06
Identities = 29/91 (31%), Positives = 49/91 (52%), Gaps = 10/91 (10%)
Query: 77 LLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARI 136
L GH+ +T ++++ D L S ++D I VW + E GT +GHT I
Sbjct: 6 LQGHERPLTQIKYNHDGDL----------LFSCAKDKVINVWFSHNGERLGTYEGHTGAI 55
Query: 137 NDFDIHPSNRVAVSVSEDHSIRLWNLMTVKK 167
DI+ S+ + VS + D+++RLW++ T K+
Sbjct: 56 WTCDINKSSTLMVSGAADNTMRLWDVKTGKQ 86
>Hs5174447 [T] KOG0279 G protein beta subunit-like protein
Length = 317
Score = 51.2 bits (121), Expect = 3e-06
Identities = 33/95 (34%), Positives = 51/95 (52%), Gaps = 14/95 (14%)
Query: 75 GTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRV-KDWENFG----TL 129
GTL GH G +T + + Q +LSAS D II+W++ +D N+G L
Sbjct: 9 GTLKGHNGWVTQIATTP---------QFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL 59
Query: 130 KGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
+GH+ ++D I + A+S S D ++RLW+L T
Sbjct: 60 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT 94
>Hs20548461 [R] KOG0644 Uncharacterized conserved protein contains WD40 repeat
and BROMO domains
Length = 736
Score = 51.2 bits (121), Expect = 3e-06
Identities = 57/289 (19%), Positives = 110/289 (37%), Gaps = 45/289 (15%)
Query: 40 HSLSVKCL--DISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H SV C+ D S R + +GS+D ++I+ + L TL GH I+++
Sbjct: 210 HLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMA--------- 260
Query: 98 QDIQLNKWLLSASEDHKII-VWRVKDWENFGTLKGHTARINDFDIHPS----NRVAVSVS 152
+ L++A K++ VW ++ L+GH+A I PS NR S
Sbjct: 261 --VNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRYLTSTG 318
Query: 153 EDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLLIFKTETAKVH 212
D +I W L+ +++G W + + K ++ T
Sbjct: 319 ADGTICFWQWHVKTMKFSLRFVSGSRDGTARIWQYQQQEW-------KSIVLDMATKMTG 371
Query: 213 REIDFSRNTLMHLEREIIDGEEY---IVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXX 269
+ + + L+ ++ + Y ++ +N+ ++ W +
Sbjct: 372 NNLPSGEDKITKLKVTMVAWDRYDTTVITAVNNFLLKVWNS--------------ITGQL 417
Query: 270 XFSLLGHSNRVKDFQFYHNKFGHYLV-TIGSDGRIVVWDMKTRDQVAVY 317
+L GH + V F + F ++ + G DG I +WD+ ++ Y
Sbjct: 418 LHTLSGHDDEV--FVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNY 464
>7297305 [T] KOG0279 G protein beta subunit-like protein
Length = 318
Score = 51.2 bits (121), Expect = 3e-06
Identities = 42/145 (28%), Positives = 66/145 (44%), Gaps = 17/145 (11%)
Query: 39 AHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQ 98
+H +S L Y +SGS D+ +R++DL K GH + ++ FS AD
Sbjct: 64 SHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFS----AD-- 117
Query: 99 DIQLNKWLLSASEDHKIIVWRVKDWENFGTLK-GHTARIN--DFDIHPSNRVAVSVSEDH 155
N+ ++S S D I +W F + GHT ++ F + SN + VS D
Sbjct: 118 ----NRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDR 173
Query: 156 SIRLWNLMTVKKAGVLKLRKYNQNG 180
++++WNL K LK + NG
Sbjct: 174 TVKVWNLANCK----LKNNHHGHNG 194
>7294830 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 942
Score = 51.2 bits (121), Expect = 3e-06
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 50 SKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSA 109
++ Y+ +GS D +RI+D+ K ++ GH+ IT L +S ++L+S
Sbjct: 721 NRHYMATGSADCTVRIWDIVKAVQVRIFRGHKSRITALIYS----------ICGRYLVSG 770
Query: 110 SEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKK 167
+D+ I++W + H A IN +I N + V +D + LW+ V K
Sbjct: 771 GDDNLIMIWDTANEILMQFFDHHKASINTMEISLDNNILVVGGQDCQLTLWDFEQVIK 828
>YOR269w [S] KOG0295 WD40 repeat-containing protein
Length = 494
Score = 50.8 bits (120), Expect = 3e-06
Identities = 39/157 (24%), Positives = 67/157 (41%), Gaps = 32/157 (20%)
Query: 37 FQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDAD 96
FQ HS V+ +D+ Y++SGS+D +R+ L GH+ I ++F + D
Sbjct: 293 FQPHSQWVRSIDVLGDYIISGSHDTTLRLTHWPSGNGLSVGTGHEFPIEKVKFIHFIE-D 351
Query: 97 GQDIQLN------------KWLLSASEDHKIIVWRV-----------------KDWENFG 127
+I+ ++ +SAS D I +W + ++
Sbjct: 352 SPEIRFRTPSTDRYKNWGMQYCVSASRDRTIKIWEIPLPTLMAHRAPIPNPTDSNFRCVL 411
Query: 128 TLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
TLKGH + + D I + S ++D S+R W+L T
Sbjct: 412 TLKGHLSWVRDISIR--GQYLFSCADDKSVRCWDLNT 446
>At5g52820 [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 473
Score = 50.8 bits (120), Expect = 3e-06
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 40 HSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H+ +V C+ S + L SGS D +R++DL L T GH+ + + +S DG
Sbjct: 108 HAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWS----PDG 163
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGT-LKGHTARINDFDIHPSN-----RVAVSV 151
K L+S S+ +I W K E G+ L GH I P + R V+
Sbjct: 164 ------KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTS 217
Query: 152 SEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSY 192
S+D R+W++ T+KK+ ++ L + V+W G+ Y
Sbjct: 218 SKDGDARIWDI-TLKKS-IICLSGHTLAVTCVKWGGDGIIY 256
>Hs7108333_2 [R] KOG4155 FOG: WD40 repeat
Length = 668
Score = 50.8 bits (120), Expect = 3e-06
Identities = 45/227 (19%), Positives = 94/227 (40%), Gaps = 21/227 (9%)
Query: 34 IFHFQAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSR 91
+ +AH V C S R++ + S D+ ++I++ + + T H + F+
Sbjct: 70 LLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTN 129
Query: 92 GKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSV 151
+ L + S D + +W + E T+ GHT +N P +++ S
Sbjct: 130 SSH--------HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASC 181
Query: 152 SEDHSIRLWNLMTVKKAGVLKLRKYNQNGQ--------FVRWC--GENGSYIAVGLLNKL 201
S D +++LW+ + + + ++++ N + V+ C +G+ I V NK+
Sbjct: 182 SADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 241
Query: 202 LIFKTETAKVHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFW 248
+F T+ + EI ++ + + VV L+ V+ W
Sbjct: 242 FLFDIHTSGLLGEIHTGHHSTIQY-CDFSPQNHLAVVALSQYCVELW 287
>Hs5032027 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 425
Score = 50.4 bits (119), Expect = 4e-06
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 33 PIFHFQAHSLSVKCLDI---SKRYLVSGSNDENIRIYDLQKRK-ELGTLLGHQGSITNLR 88
P AH+ V CL S+ L +GS D+ + ++DL+ K +L + H+ I ++
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 324
Query: 89 FSRGKD----ADGQDIQLNKWLLS-ASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHP 143
+S + + G D +LN W LS E+ E GHTA+I+DF +P
Sbjct: 325 WSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384
Query: 144 SNR-VAVSVSEDHSIRLWNL 162
+ V SVSED+ +++W +
Sbjct: 385 NEPWVICSVSEDNIMQVWQM 404
>ECU11g1750 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 556
Score = 50.4 bits (119), Expect = 4e-06
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 53 YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASED 112
YL +GS+D +R++D+ + GH ++T + S K+L S S+D
Sbjct: 420 YLFTGSSDHRVRMHDISTASVVRIFCGHTDTVTCMDVSH----------CGKFLASGSKD 469
Query: 113 HKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVKKAGVL 171
+++W ++ + G GH + V S D+S+RLW+ T K G L
Sbjct: 470 RTVLLWDIQSSKLLGKYVGHENTVFSVSFCFYGSVLASCGADNSVRLWD-RTDHKGGCL 527
>ECU03g1520 [DO] KOG0305 Anaphase promoting complex Cdc20 Cdh1 and Ama1
subunits
Length = 369
Score = 50.4 bits (119), Expect = 4e-06
Identities = 40/219 (18%), Positives = 93/219 (42%), Gaps = 21/219 (9%)
Query: 40 HSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQD 99
H + ++ +++GS D I+I DL+ K + T+L H+ + L S+
Sbjct: 151 HKSRIGVIESESTNVITGSRDRKIKITDLRSEKAVATILHHRQEVCGLSISKDL------ 204
Query: 100 IQLNKWLLSASEDHKIIVWRVKDWEN-FGTLKGHTARINDFD---IHPSNRVAVSVSEDH 155
++L S D+++ ++ ++ + H A + + P+ ++ + D
Sbjct: 205 ----RFLASGGNDNRLYIYDYRNLSHPLKQCSNHKAAVKAMSWSPLSPNLLISGGGTADK 260
Query: 156 SIRLW--NLMTVKKAGVLKLRKYNQNGQF--VRWCGENGSYIAVGL-LNKLLIFKTETAK 210
+++LW N++ ++ +R + Q ++W N G + + + + + K
Sbjct: 261 TVKLWDVNMINSSRSSSCLVRSVDYGSQICNLKWLKSNKILSTHGYSKDDIRLSQMSSFK 320
Query: 211 VHREIDFSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWK 249
+ R +N ++H D E+Y V G + + FW+
Sbjct: 321 IERYFLGHKNRVIHF--SCSDDEKYFVSGSSDSNINFWE 357
>7301796 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 436
Score = 50.4 bits (119), Expect = 4e-06
Identities = 37/155 (23%), Positives = 70/155 (44%), Gaps = 13/155 (8%)
Query: 7 RIIVGSYEHXXXXXXXXXXXTQPLFTPIFHFQAHSLSVKCLDISKRYLVSGSNDENIRIY 66
+I+ GS++ + F + A ++ + + + + + S D + RIY
Sbjct: 165 KIVTGSFDGTAKVWSATSGQSLCTF---YGHTAELVAAEFHPVDGKSIATASLDGSARIY 221
Query: 67 DLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENF 126
D++ EL L H + RF+R DGQ LL+ S DH +W V+
Sbjct: 222 DVETSHELQQLTHHGAEVIAARFNR----DGQ------MLLTGSFDHSAAIWDVRSKSLG 271
Query: 127 GTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWN 161
L+GH+A +++ + S + + S D++ R+W+
Sbjct: 272 HQLRGHSAELSNCVWNFSGSLIATGSLDNTARIWD 306
>7300370 [A] KOG0306 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 922
Score = 50.4 bits (119), Expect = 4e-06
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 40 HSLSVKCLDIS--KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
H L V CLDIS +V+GS D N++++ L ++ H S+ +++F
Sbjct: 580 HKLPVICLDISYDSNLIVTGSADRNVKVWGLNFGDCHRSIFAHDDSVMSVQF-------- 631
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
I + +D K+ W ++E TL GH + P+ R V+ D ++
Sbjct: 632 --IPRTHMFFTCGKDGKVKQWDGDNFEKILTLPGHIGEAYCLSVSPNGRYLVTCGSDRTL 689
Query: 158 RLW 160
R++
Sbjct: 690 RMF 692
>YCR084c [R] KOG0266 WD40 repeat-containing protein
Length = 713
Score = 50.1 bits (118), Expect = 6e-06
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 18/233 (7%)
Query: 104 KWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLM 163
K+L + +ED I +W +++ + L+GH I D PS VS S D ++R+W+L
Sbjct: 456 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 515
Query: 164 TVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREIDFSRNTL 222
T + + L + V +G YIA G L++ + ++ +ET + +D S N
Sbjct: 516 TGQCSLTLSI---EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD-SENES 571
Query: 223 MHLEREII-------DGEEYIVVGLNSGAVQFWKASKLYXXXXXXXXXXXXXXXXFSLLG 275
++ + DG+ +V G +V+ W + +G
Sbjct: 572 GTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY--IG 628
Query: 276 HSNRVKDFQFYHNKFGHYLVTIGSDGRIVVWDMKTRDQVAVYDCGERLNCVAV 328
H + V N Y+++ D ++ WD K+ + + + G R + ++V
Sbjct: 629 HKDFVLSVATTQN--DEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISV 678
>SPBC2G2.18 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 775
Score = 50.1 bits (118), Expect = 6e-06
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 27 TQPLFTPIFHFQAHSLSVKCLDISKRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITN 86
T P + I + H+ SV+ + +VS S D +R++ L L GH G + +
Sbjct: 565 TNPFY--IRTLRGHTDSVREVACLGDLIVSASYDGTLRVWKASTGVCLHVLRGHVGRVYS 622
Query: 87 LRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNR 146
+ + + +SA D KI +W ++ E TL GH+ ++ + +
Sbjct: 623 VTINPSRQQ----------CISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQNIL 672
Query: 147 VAVSVSEDHSIRLWNLMTVKKAGVLK 172
V+ S D S+R+W+L T +LK
Sbjct: 673 VSASAPPDTSLRVWDLNTGSCRDILK 698
>Hs8922428 [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 485
Score = 50.1 bits (118), Expect = 6e-06
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 38 QAHSLSVKCLDISK--RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDA 95
+ HS +V + S +YL SGS D +R +DL T GH+ + ++ +S
Sbjct: 111 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWS----P 166
Query: 96 DGQDIQLNKWLLSASEDHKIIVWRVKDWENFG-TLKGHTARINDFD-----IHPSNRVAV 149
DG K L S ++ +I++W + G TL GH+ I +P R
Sbjct: 167 DG------KKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVA 220
Query: 150 SVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIA 194
S S+D S+R+W+ + + L + Q+ +RW G+ Y A
Sbjct: 221 SSSKDGSVRIWDTTAGRCERI--LTGHTQSVTCLRWGGDGLLYSA 263
>CE18673 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 1000
Score = 50.1 bits (118), Expect = 6e-06
Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 37 FQAHSLSVKCLDISKR---YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGK 93
F+ H+ V + I+ + + S D+ ++++ TL GH+ + + + G
Sbjct: 138 FEGHTHYVMQIAINPKDNNTFATASLDKTVKVWQFGSNVPNFTLEGHEKGVNCVDYYHGG 197
Query: 94 DADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSE 153
+ +++S ++DH + +W ++ TL GH ++ HP + ++ SE
Sbjct: 198 E--------KPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPELPLIITGSE 249
Query: 154 DHSIRLWNLMTVK 166
D ++RLW+ T +
Sbjct: 250 DSTVRLWHANTYR 262
>At5g25150 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 700
Score = 50.1 bits (118), Expect = 6e-06
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 43 SVKCLDISK-----RYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADG 97
S+K D++K + ND + + R+ LLGH G + + FS D
Sbjct: 375 SIKVWDMAKIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSGPVYSATFSPPGD--- 431
Query: 98 QDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSI 157
++LS+S D I +W K N KGH + D P S S D +
Sbjct: 432 -------FVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTA 484
Query: 158 RLWNLMTVKKAGVLKLRKYNQNGQFVRWCGENGSYIAVGLLNKLL-IFKTETAKVHREID 216
R+W++ ++ LR + V W N +YIA G +K + ++ +T + R
Sbjct: 485 RIWSMDRIQ-----PLRIMAGHLSDVDW-HPNCNYIATGSSDKTVRLWDVQTGECVRIFI 538
Query: 217 FSRNTLMHLEREIIDGEEYIVVGLNSGAVQFWKAS 251
R+ ++ L DG Y+ G G + W S
Sbjct: 539 GHRSMVLSLAMS-PDG-RYMASGDEDGTIMMWDLS 571
>SPBP22H7.07 [A] KOG0285 Pleiotropic regulator 1
Length = 473
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/134 (24%), Positives = 59/134 (43%), Gaps = 12/134 (8%)
Query: 44 VKCLDIS--KRYLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQ 101
V+C+D+ ++ +G+ D I+I+DL TL GH ++ L S
Sbjct: 166 VRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVS----------P 215
Query: 102 LNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWN 161
+ +L S ED + W ++ + GH + + +HP+ V V+ D R+W+
Sbjct: 216 RHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWD 275
Query: 162 LMTVKKAGVLKLRK 175
+ T + VL K
Sbjct: 276 MRTRQNVHVLSGHK 289
>At1g49040 [T] KOG2127 Calmodulin-binding protein CRAG contains DENN domain
Length = 1264
Score = 49.7 bits (117), Expect = 7e-06
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 53 YLVSGSNDENIRIYDLQKR-KEL-GTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSAS 110
+ +SGS D ++I+D R EL TL GH G++ + RGK ++S S
Sbjct: 946 FFISGSTDCLVKIWDPSLRGSELRATLKGHTGTVRAISSDRGK------------IVSGS 993
Query: 111 EDHKIIVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMT 164
+D +IVW + + LKGH ++++ + RV ++ + D ++++W++ T
Sbjct: 994 DDLSVIVWDKQTTQLLEELKGHDSQVSCVKMLSGERV-LTAAHDGTVKMWDVRT 1046
>YMR146c [JT] KOG0643 Translation initiation factor 3 subunit i
(eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1)
Length = 347
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/86 (31%), Positives = 43/86 (49%), Gaps = 10/86 (11%)
Query: 77 LLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKIIVWRVKDWENFGTLKGHTARI 136
L GH+ +T +++++ D L S S+D VW + E GTL GHT I
Sbjct: 6 LTGHERPLTQVKYNKEGDL----------LFSCSKDSSASVWYSLNGERLGTLDGHTGTI 55
Query: 137 NDFDIHPSNRVAVSVSEDHSIRLWNL 162
D+ + V+ S D+SI+LW++
Sbjct: 56 WSIDVDCFTKYCVTGSADYSIKLWDV 81
>7298053 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 860
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 56 SGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKDADGQDIQLNKWLLSASEDHKI 115
S S D ++++ L TL GH+ + + + G D +L+S ++D +
Sbjct: 131 SASLDRTVKVWQLGSNFANFTLEGHEKGVNCVDYYHGGD--------KPYLISGADDRLV 182
Query: 116 IVWRVKDWENFGTLKGHTARINDFDIHPSNRVAVSVSEDHSIRLWNLMTVK 166
+W ++ TL+GH I+ HP + ++ SED ++R+W+ T +
Sbjct: 183 KIWDYQNKTCVQTLEGHAQNISAVCFHPELPIVLTGSEDGTVRIWHSGTYR 233
>7296695 [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 439
Score = 49.3 bits (116), Expect = 1e-05
Identities = 38/159 (23%), Positives = 71/159 (43%), Gaps = 27/159 (16%)
Query: 37 FQAHSLSVKCLDISKR--YLVSGSNDENIRIYDLQKRKELGTLLGHQGSITNLRFSRGKD 94
+QAH +++ + S VSGS+D +RI+D + +E L GH
Sbjct: 225 YQAHKEAIRGISFSPTDSKFVSGSDDGTLRIWDFMRCQEERVLRGH-------------- 270
Query: 95 ADGQDIQLNKW------LLSASEDHK--IIVWRVKDWENFGTLKGHTARINDFDIHPSNR 146
G D++ W ++S S+D++ I +W K TL H + + D + +
Sbjct: 271 --GADVKCVHWHPQKGMIVSGSKDNQQPIKIWDPKSGIALATLHAHKSTVMDLKWNDNGN 328
Query: 147 VAVSVSEDHSIRLWNLMTVKKAGVLKLRKYNQNGQFVRW 185
V+ S DH ++L+++ +++ V R + + V W
Sbjct: 329 WLVTASRDHLLKLFDIRNLREE-VQVFRGHKKEASSVSW 366
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,331,575
Number of Sequences: 60738
Number of extensions: 862297
Number of successful extensions: 5940
Number of sequences better than 1.0e-05: 121
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 4955
Number of HSP's gapped (non-prelim): 640
length of query: 390
length of database: 30,389,216
effective HSP length: 108
effective length of query: 282
effective length of database: 23,829,512
effective search space: 6719922384
effective search space used: 6719922384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)