ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2177 good K KOG2009 Transcription Transcription initiation factor TFIIIB, Bdp1 subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2177 761242 762954 571
(571 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL039w [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 ... 418 e-116
SPCC1919.14c [K] KOG2009 Transcription initiation factor TFIIIB ... 122 2e-27
Hs21281669 [K] KOG2009 Transcription initiation factor TFIIIB Bd... 90 1e-17
7298050 [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 ... 75 3e-13
ECU03g1040 [K] KOG2009 Transcription initiation factor TFIIIB Bd... 67 6e-11
CE29531 [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 ... 65 2e-10
At4g39160 [K] KOG2009 Transcription initiation factor TFIIIB Bdp... 57 1e-07
>YNL039w [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 subunit
Length = 594
Score = 418 bits (1075), Expect = e-116
Identities = 241/581 (41%), Positives = 327/581 (55%), Gaps = 38/581 (6%)
Query: 1 MSSVVNKSAKRFVPKLRERRILNSXXXXXXXXXXSDDITKSTAEDSHENEADNEDGLNES 60
MSS+VNKS RF PK+R+RR I +S ++ E+ +DN+ G++E+
Sbjct: 1 MSSIVNKSGTRFAPKVRQRRAATGGTPTPKPRTPQLFIPES--KEIEEDNSDNDKGVDEN 58
Query: 61 STDNTEP-----KRSDEESKINETVDEDDPLSQTTLVKNLNPSRTSTQIPVVTV------ 109
T E +RS E + T D+ + P STQ P V
Sbjct: 59 ETAIVEKPSLVGERSLEGFTLTGTNGHDNEIGDE------GPIDASTQNPKADVIEDNVT 112
Query: 110 -----------SSATNXXXXXXXXXXXGTKPTFKSGFMGPGSLNTGNVPERSRRLSSIST 158
++P+FK F+ S + G +RRLS+IS
Sbjct: 113 LKPAPLQTHRDQKVPRSSRLASLSKDNESRPSFKPSFLDSSSNSNGT----ARRLSTISN 168
Query: 159 GSLRKKSLTVNSENDSSLQAIKRRRMSSRSSTGKGPGKVQRISIVSRMSSPDDDSLTAKP 218
+K L +END +L+ KR R+ + S+ K P RISIVS++S P ++T
Sbjct: 169 KLPKKIRLGSITENDMNLKTFKRHRVLGKPSSAKKPAGAHRISIVSKISPPT--AMTDSL 226
Query: 219 AGDSENCDDIFQRTDDLYQKYTITNLKMIPKKIADKDSSKYLIDEENFTMADLCKPTLPI 278
+ + + R D + Y I+ +K IPKK+ D +S+KY IDEENFTMA+LCKP PI
Sbjct: 227 DRNEFSSETSTSREADENENYVISKVKDIPKKVRDGESAKYFIDEENFTMAELCKPNFPI 286
Query: 279 GEISENFSXXXXXXXXXXXXXXXXXXXXXXXXXXFKSLNELVTXXXXXXXXXXXXAAQDL 338
G+ISENF FK L+ L L
Sbjct: 287 GQISENFEKSKMAKKAKLEKRRHLRELRMRARQEFKPLHSLTKEEQEEEEEKRKEERDKL 346
Query: 339 FDTEVP--DEKPHQGIQLKMAADGSMVVDEESMVVDRHKNASLENSSKEKIQNNPFENLY 396
+ ++P D K H IQLK+ DG+M +DEE+MVVDRHKNAS+EN KEK+ NPF NLY
Sbjct: 347 LNADIPESDRKAHTAIQLKLNPDGTMAIDEETMVVDRHKNASIENEYKEKVDENPFANLY 406
Query: 397 NSATYGRQQFTDPWTIEEMIKFYQALSMWGTDFNLISQLFPYRSRRQIKSKFVNEEKKHP 456
N +YGR +TDPWT+EEMIKFY+ALSMWGTDFNLISQL+PYRSR+Q+K+KFVNEEKK P
Sbjct: 407 NYGSYGRGSYTDPWTVEEMIKFYKALSMWGTDFNLISQLYPYRSRKQVKAKFVNEEKKRP 466
Query: 457 VMIELALRSKLPPNFEQYCKETRKNIGTVTEFNKRLDQLQVEHEEHLKQIEVERQNAREQ 516
++IELALRSKLPPNF++YC E +KNIGTV +FN++L +LQ EH+ H+K+IE + A+E+
Sbjct: 467 ILIELALRSKLPPNFDEYCCEIKKNIGTVADFNEKLIELQNEHKHHMKEIEEAKNTAKEE 526
Query: 517 DIKQQTVKEHERSQKGKHGGRYDQLKGYRKSEIVLGSIDDL 557
D Q + + ++KG G + LK YRK+E+VLG+IDDL
Sbjct: 527 DQTAQRLNDANLNKKGSGGIMTNDLKVYRKTEVVLGTIDDL 567
>SPCC1919.14c [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 subunit
Length = 507
Score = 122 bits (305), Expect = 2e-27
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 7/173 (4%)
Query: 359 DGSMVVDEESMVVDRHKNASLENSSKEKIQNNPFENLYNSATYGRQQFTDPWTIEEMIKF 418
+G +V+DE S+ VDRH+ + +E ++ N SAT+G +Q + W + KF
Sbjct: 317 NGQIVLDETSLEVDRHERDFVPAEEREYVEENSLSRRVTSATWGNRQKPEKWNAMDTEKF 376
Query: 419 YQALSMWGTDFNLISQLFPYRSRRQIKSKFVNEEKKHPVMIELALRSKLPPNFEQYCKET 478
Y+ALS WGTDF LI+ +FP R+RRQIK KF EE+++P + AL+ K P + E+Y K +
Sbjct: 377 YKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALKIKKPIDMEEYSKVS 436
Query: 479 RKNIGTVTEFNKRLDQLQVEHEEHLKQIEVERQNAREQDIKQQTVKEHERSQK 531
K V E K L +++ EE ER+ A E ++Q + HE Q+
Sbjct: 437 GKVFRPVEEMEKELQKIRENFEE-------ERRRAIEVAEQRQLIVNHELEQE 482
>Hs21281669 [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 subunit
Length = 2254
Score = 89.7 bits (221), Expect = 1e-17
Identities = 63/211 (29%), Positives = 105/211 (48%), Gaps = 20/211 (9%)
Query: 335 AQDLFDTEVPDEKPHQGIQLKMAADGSMVVDEESMVVD--RHKNASLENSSKEKIQNNPF 392
A+D E D+ P ++K+A DGS+++DEES+ V+ R K + +N+P
Sbjct: 229 AEDNEMEEETDDGPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVE------ENDPI 282
Query: 393 ENLYNSATYG---RQQFTDPWTIEEMIKFYQALSMWGTDFNLISQLFPYRSRRQIKSKFV 449
++ TY + ++ PW+ +E F+ A+SM GTDF++I QLFP+R+R +IK+KF
Sbjct: 283 FERGSTTTYSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFK 342
Query: 450 NEEKKHPVMIELALRSKLPPNFEQYC---------KETRKNIGTVTEFNKRLDQLQVEHE 500
EEK + I+ A + K P +F+ + +E RK K +
Sbjct: 343 REEKTNGWRIDKAFQEKRPFDFDFFAHLLQKVLAEEEKRKQKSVKNHSLKEKKSTKPRKN 402
Query: 501 EHLKQIEVERQNAREQDIKQQTVKEHERSQK 531
+K++ E N + + + ERSQK
Sbjct: 403 VKVKKVACEGVNNDPDESMSSRISDTERSQK 433
>7298050 [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 subunit
Length = 693
Score = 75.1 bits (183), Expect = 3e-13
Identities = 39/115 (33%), Positives = 71/115 (60%), Gaps = 8/115 (6%)
Query: 353 QLKMAADGSMVVDEESMVVDRHKNASLENSSKEKIQNNPF----ENLYNSATYGRQQFTD 408
QLK+ A+G M++DE+++ ++ + E +++ + N+ E ++ Y R + T
Sbjct: 292 QLKLDANGEMIIDEKTLEIE----TTAEVEARKVLANSSLILMDETTGDNGFYKRHKRTP 347
Query: 409 PWTIEEMIKFYQALSMWGTDFNLISQLFPYRSRRQIKSKFVNEEKKHPVMIELAL 463
WT +E ++FY++L + GTDF+L+ Q+FP RSRR +K K+ EE+ + +I AL
Sbjct: 348 YWTSDETVRFYRSLQIIGTDFSLMCQMFPTRSRRDLKLKYKKEERTNGQLINKAL 402
>ECU03g1040 [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 subunit
Length = 176
Score = 67.4 bits (163), Expect = 6e-11
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Query: 353 QLKMAADGSMVVDEESMVVDRHKNASLENSSKEKIQNNPFENLYNSATYGRQQFTDPWTI 412
++ M +G +VV++ +M VD HK +E ++I S+T+ +++ W+
Sbjct: 54 EILMIKNGHIVVNDANMYVDTHKVMEMEVMEDDRI--------VTSSTFSKKKGALRWSK 105
Query: 413 EEMIKFYQALSMWGTDFNLISQLFPYRSRRQIKSKFVNEEKKHPVMIELAL 463
+E+ FY+AL + G +F+LIS LFP + R+ IK+K++ E K +P I L
Sbjct: 106 KEIELFYKALEICGIEFSLISSLFPNKERKHIKAKYIKEAKVNPERINEVL 156
>CE29531 [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 subunit
Length = 779
Score = 65.5 bits (158), Expect = 2e-10
Identities = 61/228 (26%), Positives = 99/228 (42%), Gaps = 25/228 (10%)
Query: 337 DLFDTEVPDEKPHQGIQLKMAADGSMVVDEESMVVDRHKNASLENSSKEKIQNNPFENLY 396
++ D + P Q+K+ ADG +V+DE S+VV H S E ++
Sbjct: 190 EIGDLDAPPAPRINAPQVKIGADGRLVIDETSLVV--HSAQINHESVWETVEEGRMGAKI 247
Query: 397 NSATYGRQQF--TDPWTIEEMIKFYQALSMWGTDFNLISQLFPYRSRRQIKSKFVNEEK- 453
S ++ ++ F + W+ +E FY+ L G DF L+S P R+R ++K+K+ EEK
Sbjct: 248 TSMSFRKRGFGKSSFWSEKETDLFYEVLQCTGQDFGLMSHYLPKRTRPELKAKYNREEKI 307
Query: 454 ---------KHPVMIELALR---SKLPPNFEQYCKETRKNIGTVTEFNKRLDQLQVEHEE 501
HPV ++ L SKL E+ +E + KR+ E+
Sbjct: 308 NWARVLNAISHPVRLDGNLEVRISKLMTEMEEEAQEKKAKGEYEKAEEKRI------REQ 361
Query: 502 HLKQIEVERQNAREQDIKQQTVKEHERSQKGKHGGRYD-QLKGYRKSE 548
+ Q ER A+E +KQ E + K + D + + KSE
Sbjct: 362 NRLQKATERNQAKEL-VKQAKELERDARNAAKLNMKADKEARAQEKSE 408
>At4g39160 [K] KOG2009 Transcription initiation factor TFIIIB Bdp1 subunit
Length = 545
Score = 56.6 bits (135), Expect = 1e-07
Identities = 44/158 (27%), Positives = 76/158 (47%), Gaps = 15/158 (9%)
Query: 383 SKEKIQNNPF--ENLYNSATYGRQQFTDPWTIEEMIKFYQALSMWGTDFNLISQLFPYRS 440
S E +NN ++ N TY + W+ E+ FY+ + +G++ ++I QLFP R+
Sbjct: 364 SSEYQENNVVKPDSPVNYQTYMNKTSRTRWSKEDTELFYEGIQEFGSNLSMIQQLFPERT 423
Query: 441 RRQIKSKFVNEEKKHPVMIELAL--RSKLPPNFEQYCKETRKNIGTVTEFNKRLDQLQVE 498
R Q+K KF EE+++P+ + AL RSK +F+ K+ ++ E
Sbjct: 424 REQMKLKFKLEERRNPLKLNDALSSRSKHFTHFKNVIKKLQQEAAAAKE----------G 473
Query: 499 HEEHLKQIEVERQNAREQDIKQQTVKEHERSQKGKHGG 536
EE E E + E + +++ +E ER+ G G
Sbjct: 474 EEEEEAGAEAETTDVPENEEPEKS-EETERASDGVAAG 510
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.309 0.127 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,614,829
Number of Sequences: 60738
Number of extensions: 1209463
Number of successful extensions: 7247
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7229
Number of HSP's gapped (non-prelim): 11
length of query: 571
length of database: 30,389,216
effective HSP length: 112
effective length of query: 459
effective length of database: 23,586,560
effective search space: 10826231040
effective search space used: 10826231040
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)