ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2261 normal R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2261 782800 784224 475
(475 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL016w [R] KOG0118 FOG: RRM domain 275 8e-74
At3g14100 [R] KOG0118 FOG: RRM domain 135 1e-31
At1g54080 [R] KOG0118 FOG: RRM domain 134 2e-31
At1g17370 [R] KOG0118 FOG: RRM domain 134 4e-31
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 120 4e-27
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 115 1e-25
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 114 4e-25
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 109 1e-23
At1g60000 [R] KOG0118 FOG: RRM domain 108 2e-23
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 107 3e-23
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 104 3e-22
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 101 3e-21
At2g18510 [A] KOG0131 Splicing factor 3b subunit 4 100 8e-21
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 97 4e-20
At1g49600 [R] KOG0118 FOG: RRM domain 97 5e-20
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 96 9e-20
At5g50250 [R] KOG0118 FOG: RRM domain 96 9e-20
At3g52380 [R] KOG0118 FOG: RRM domain 96 1e-19
At3g19130 [R] KOG0118 FOG: RRM domain 96 1e-19
At1g47500 [R] KOG0118 FOG: RRM domain 96 2e-19
At1g47490 [R] KOG0118 FOG: RRM domain 96 2e-19
At5g19350 [R] KOG0118 FOG: RRM domain 95 2e-19
At2g37220 [R] KOG0118 FOG: RRM domain 94 4e-19
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 94 6e-19
At4g24770 [R] KOG0118 FOG: RRM domain 94 6e-19
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 93 1e-18
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 93 1e-18
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 92 1e-18
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 91 4e-18
7290689 [A] KOG0131 Splicing factor 3b subunit 4 91 5e-18
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 90 6e-18
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 90 8e-18
Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 89 1e-17
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 89 2e-17
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 89 2e-17
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 88 2e-17
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 88 2e-17
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 88 3e-17
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 87 4e-17
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 87 4e-17
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 87 5e-17
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 87 5e-17
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 87 7e-17
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 86 9e-17
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 86 9e-17
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 86 1e-16
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 86 2e-16
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 84 4e-16
At1g11650 [R] KOG0118 FOG: RRM domain 84 5e-16
At5g54900 [R] KOG0118 FOG: RRM domain 84 6e-16
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 83 8e-16
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 83 1e-15
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 82 2e-15
At4g27000 [R] KOG0118 FOG: RRM domain 82 2e-15
SPAC17A2.09c [R] KOG0118 FOG: RRM domain 81 4e-15
Hs8923460 [R] KOG0118 FOG: RRM domain 79 1e-14
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 78 3e-14
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 77 7e-14
YHR086w [R] KOG0118 FOG: RRM domain 76 1e-13
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 75 2e-13
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 75 2e-13
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 75 2e-13
At3g23830 [R] KOG0118 FOG: RRM domain 75 3e-13
7290149 [R] KOG0118 FOG: RRM domain 75 3e-13
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 74 5e-13
At5g40490 [R] KOG0118 FOG: RRM domain 74 6e-13
At4g13850 [R] KOG0118 FOG: RRM domain 74 6e-13
7299788 [R] KOG0118 FOG: RRM domain 74 6e-13
7301687 [R] KOG0118 FOG: RRM domain 73 1e-12
7301686 [R] KOG0118 FOG: RRM domain 73 1e-12
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 71 3e-12
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 71 3e-12
7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 71 3e-12
7290796 [R] KOG0118 FOG: RRM domain 71 3e-12
CE06396 [R] KOG0118 FOG: RRM domain 70 5e-12
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 70 7e-12
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 70 7e-12
7296727 [R] KOG0226 RNA-binding proteins 70 7e-12
YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 69 2e-11
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 68 3e-11
At1g74230 [R] KOG0118 FOG: RRM domain 67 4e-11
Hs7657506 [R] KOG4733 FOG: RRM domain 67 6e-11
At3g53460 [R] KOG0118 FOG: RRM domain 67 6e-11
YBR212w [R] KOG0118 FOG: RRM domain 67 8e-11
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 67 8e-11
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 67 8e-11
At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 66 1e-10
Hs5803137 [R] KOG0118 FOG: RRM domain 66 1e-10
Hs4502847 [R] KOG0118 FOG: RRM domain 65 2e-10
Hs22042102 [R] KOG0118 FOG: RRM domain 65 2e-10
CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 65 2e-10
CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 65 2e-10
At2g35410 [R] KOG0118 FOG: RRM domain 65 2e-10
7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 65 2e-10
Hs4504447 [R] KOG0118 FOG: RRM domain 65 2e-10
Hs14043072 [R] KOG0118 FOG: RRM domain 65 2e-10
CE18909 [R] KOG4733 FOG: RRM domain 65 2e-10
At2g14550 [A] KOG0131 Splicing factor 3b subunit 4 65 2e-10
At5g61030 [R] KOG0118 FOG: RRM domain 65 3e-10
At4g39260 [R] KOG0118 FOG: RRM domain 65 3e-10
At1g34140 [R] KOG0118 FOG: RRM domain 65 3e-10
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 64 4e-10
SPAC31G5.01 [A] KOG0131 Splicing factor 3b subunit 4 64 4e-10
Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 64 5e-10
Hs13650572 [R] KOG0118 FOG: RRM domain 64 5e-10
CE18908 [R] KOG4733 FOG: RRM domain 64 5e-10
Hs4504445 [R] KOG0118 FOG: RRM domain 64 6e-10
Hs14043070 [R] KOG0118 FOG: RRM domain 64 6e-10
7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 64 6e-10
Hs5803036 [R] KOG0118 FOG: RRM domain 63 8e-10
Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 63 8e-10
At3g08000 [R] KOG0118 FOG: RRM domain 63 1e-09
7295704 [R] KOG0118 FOG: RRM domain 63 1e-09
HsM13236563 [R] KOG0226 RNA-binding proteins 62 2e-09
Hs4506449 [R] KOG4733 FOG: RRM domain 62 2e-09
Hs21359951 [R] KOG0226 RNA-binding proteins 62 2e-09
Hs13654587 [R] KOG0118 FOG: RRM domain 62 2e-09
7300034 [R] KOG0118 FOG: RRM domain 62 2e-09
At3g26420 [R] KOG0118 FOG: RRM domain 61 3e-09
SPAC22E12.02 [R] KOG0226 RNA-binding proteins 61 4e-09
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 61 4e-09
7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 61 4e-09
At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 60 5e-09
At4g14300 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 60 7e-09
At4g09040 [R] KOG0118 FOG: RRM domain 60 7e-09
At3g04500 [R] KOG0226 RNA-binding proteins 60 7e-09
SPAC328.05 [R] KOG0118 FOG: RRM domain 60 9e-09
At2g21660 [R] KOG0118 FOG: RRM domain 60 9e-09
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 59 1e-08
CE24459 [R] KOG0226 RNA-binding proteins 59 1e-08
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 59 1e-08
At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 59 1e-08
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei... 59 1e-08
Hs8400724 [R] KOG4733 FOG: RRM domain 59 2e-08
Hs8400722 [R] KOG4733 FOG: RRM domain 59 2e-08
Hs8400720 [R] KOG4733 FOG: RRM domain 59 2e-08
Hs8400718 [R] KOG4733 FOG: RRM domain 59 2e-08
Hs4506447 [R] KOG4733 FOG: RRM domain 59 2e-08
At3g52150 [R] KOG0118 FOG: RRM domain 59 2e-08
At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 59 2e-08
CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 59 2e-08
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 59 2e-08
At1g58470 [R] KOG0118 FOG: RRM domain 59 2e-08
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 59 2e-08
At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 58 4e-08
7291799 [R] KOG0118 FOG: RRM domain 58 4e-08
Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 57 5e-08
At5g06210 [R] KOG0118 FOG: RRM domain 57 5e-08
7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 57 5e-08
Hs5031693 [R] KOG0118 FOG: RRM domain 57 6e-08
Hs22049560 [R] KOG0118 FOG: RRM domain 57 8e-08
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 57 8e-08
At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 57 8e-08
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 56 1e-07
CE24152 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans i... 56 1e-07
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 56 1e-07
SPBC23E6.01c [R] KOG0118 FOG: RRM domain 55 2e-07
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 55 2e-07
At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 55 2e-07
At1g18630 [R] KOG0118 FOG: RRM domain 55 2e-07
At1g13690 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans... 55 2e-07
At1g01080 [R] KOG0118 FOG: RRM domain 55 2e-07
HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 55 3e-07
Hs9558733 [R] KOG0118 FOG: RRM domain 55 3e-07
Hs4759098 [R] KOG0118 FOG: RRM domain 54 4e-07
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 54 4e-07
Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 54 5e-07
At2g16260 [R] KOG0118 FOG: RRM domain 54 5e-07
At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 54 5e-07
Hs16519537 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 54 7e-07
At5g19960 [R] KOG0118 FOG: RRM domain 54 7e-07
Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 53 9e-07
Hs13123780 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 53 9e-07
At3g18610 [K] KOG4210 Nuclear localization sequence binding protein 53 9e-07
Hs17458873 [R] KOG0118 FOG: RRM domain 53 1e-06
CE17059 [R] KOG0118 FOG: RRM domain 53 1e-06
At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 53 1e-06
SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM... 52 1e-06
At5g65260 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 52 1e-06
Hs14734196 [R] KOG0118 FOG: RRM domain 52 2e-06
Hs14110417 [R] KOG0118 FOG: RRM domain 52 2e-06
CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 52 2e-06
At5g04280 [R] KOG0118 FOG: RRM domain 52 2e-06
YIR005w [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 52 3e-06
Hs20535199 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 52 3e-06
7301511 [R] KOG0118 FOG: RRM domain 52 3e-06
Hs20149667 [R] KOG0112 Large RNA-binding protein (RRM superfamily) 51 3e-06
YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 51 4e-06
Hs9994185 [R] KOG4454 RNA binding protein (RRM superfamily) 51 4e-06
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 51 4e-06
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 51 4e-06
Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 51 4e-06
Hs21450675 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 51 4e-06
Hs14110420 [R] KOG0118 FOG: RRM domain 51 4e-06
Hs14110414 [R] KOG0118 FOG: RRM domain 51 4e-06
At5g25060 [R] KOG0151 Predicted splicing regulator contains RRM ... 51 4e-06
At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 51 4e-06
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 50 6e-06
CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 50 6e-06
At5g10350 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 50 6e-06
At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 50 6e-06
7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 50 6e-06
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 50 7e-06
At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 50 7e-06
At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM super... 50 7e-06
YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 50 1e-05
Hs5174637 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans... 50 1e-05
ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 50 1e-05
At1g73530 [R] KOG0118 FOG: RRM domain 50 1e-05
At1g33470 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 50 1e-05
7296892 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily) 50 1e-05
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 275 bits (704), Expect = 8e-74
Identities = 129/206 (62%), Positives = 162/206 (78%)
Query: 81 SAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYA 140
S P A GGRE SD++LYVGNL K+I +D+LKQYFQ+GG I+++KI+ DKN++ NYA
Sbjct: 59 SVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYA 118
Query: 141 FVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATL 200
FVEY + HDAN+A QTLNGK++E ++KINWAFQSQQ +SD+TFNLFVGDLNV+VDD TL
Sbjct: 119 FVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETL 178
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
FK+FPS++ HVMWDMQ+G SRGYGFVSF QD AQ AM++ QG +LNGR LRINWA
Sbjct: 179 RNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Query: 261 SKREPQQSQQGQRRFNGPASGRGGFR 286
+KR+ + Q+R N + RGGFR
Sbjct: 239 AKRDNNNNNNYQQRRNYGNNNRGGFR 264
Score = 173 bits (439), Expect = 4e-43
Identities = 78/94 (82%), Positives = 84/94 (88%)
Query: 350 MMRRAPPRVTTAYIGNIPHFAQEHDLIPLLQNFGFIIDFKHYPEKGCCFIKYDTHEQAAL 409
++R APPRVTTAYIGNIPHFA E DLIPL QNFGFI+DFKHYPEKGCCFIKYDTHEQAA+
Sbjct: 332 IIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAV 391
Query: 410 CIVALTNFPFQGRNLRTGWGKEKPTFIRPQQQMG 443
CIVAL NFPFQGRNLRTGWGKE+ F+ QQQ G
Sbjct: 392 CIVALANFPFQGRNLRTGWGKERSNFMPQQQQQG 425
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 135 bits (341), Expect = 1e-31
Identities = 72/166 (43%), Positives = 105/166 (62%), Gaps = 6/166 (3%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKII-PDKNSQECNYAFVEYFEPHDANVAYQTL 157
+YVGN+ + + LL++ F G + S K+I DK+S Y FV YF+ A +A +L
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 116
Query: 158 NGKEVEGKVLKINWAFQS-QQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVM 216
NG+ + G+ +K+NWA+ + Q+ ++ FN+FVGDL+ +V DATL +F F S A VM
Sbjct: 117 NGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVM 176
Query: 217 WDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
WD ++GRSRG+GFVSF Q AQ A+ G L+ R +R NWA+K
Sbjct: 177 WDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATK 222
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 134 bits (338), Expect = 2e-31
Identities = 71/166 (42%), Positives = 104/166 (61%), Gaps = 6/166 (3%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKII-PDKNSQECNYAFVEYFEPHDANVAYQTL 157
+Y GN+ + + LL++ F G I S K+I DK+S Y FV YF+ A++A TL
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTL 120
Query: 158 NGKEVEGKVLKINWAFQS-QQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVM 216
NG+ + G+ +K+NWA+ + Q+ ++ FN+FVGDL+ +V DA L +F F S A VM
Sbjct: 121 NGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVM 180
Query: 217 WDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
WD ++GRSRG+GFVSF Q AQ A+ G ++ R +R NWA+K
Sbjct: 181 WDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATK 226
>At1g17370 [R] KOG0118 FOG: RRM domain
Length = 419
Score = 134 bits (336), Expect = 4e-31
Identities = 69/165 (41%), Positives = 103/165 (61%), Gaps = 4/165 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+YVGN+ + + LL++ F G + S K+I + S +Y FV YF+ A +A +LN
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS---SYGFVHYFDRRSAGLAILSLN 112
Query: 159 GKEVEGKVLKINWAFQS-QQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
G+ + G+ +K+NWA+ S Q+ ++ FN+FVGDL+ +V DA L F +P+ A VMW
Sbjct: 113 GRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW 172
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
D ++GRSRG+GFVSF Q AQ A++ G L R +R NWA+K
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATK 217
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 120 bits (301), Expect = 4e-27
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 8/186 (4%)
Query: 97 KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQT 156
+ LYVGNL + + + L+ Q F G S K+I + S + Y FVE++E DA A
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSND-PYCFVEFYEHRDAAAALAA 67
Query: 157 LNGKEVEGKVLKINWAF--QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
+NG+++ GK +K+NWA SQ+ ++ F++FVGDL+ ++ + F F A
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP-----QQSQ 269
V+ DM +G+S+GYGFVSF + A+ A+ G L GR +R NWA+++ P Q++
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 270 QGQRRF 275
Q RF
Sbjct: 188 TKQLRF 193
Score = 58.9 bits (141), Expect = 2e-08
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 350 MMRRAPPRVTTAYIGNIPHFAQEHDLIPLLQNFGFIIDFKHYPEKGCCFIKYDTHEQAAL 409
++ ++ P+ T Y G I + + FG I++ + +PEKG F+++ THE AA
Sbjct: 196 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAH 255
Query: 410 CIVALTNFPFQGRNLRTGWGKEKPTFIRPQQQM 442
IV++ +G ++ WGKE P + QQ+
Sbjct: 256 AIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQV 288
Score = 56.2 bits (134), Expect = 1e-07
Identities = 42/196 (21%), Positives = 83/196 (41%), Gaps = 28/196 (14%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
++VG+L I + +K F G IS +++ D + Y FV ++ DA A +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 158 NGKEVEGKVLKINWAFQ------------SQQVNSDETFN--------LFVGDLNVDVDD 197
G+ + G+ ++ NWA + ++Q+ ++ N ++ G + + D
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 198 ATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
+ TF F ++ V + +GY FV F + A A+ + G + G ++
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 272
Query: 258 NWASKREPQQSQQGQR 273
W K P ++ Q+
Sbjct: 273 YW-GKESPDMTKNFQQ 287
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 115 bits (289), Expect = 1e-25
Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANV 152
++ K LYVGNL + + + L+ Q F G + K+I D + Y FVE+ E A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGND-PYCFVEFHEHRHAAA 61
Query: 153 AYQTLNGKEVEGKVLKINWAF--QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSF 210
A +NG+++ GK +K+NWA SQ+ ++ F++FVGDL+ + + F F
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRI 121
Query: 211 IQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP 265
A V+ DM +G+S+GYGFVSF + A+ A++ G L GR +R NWA+++ P
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Score = 62.4 bits (150), Expect = 1e-09
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
++VG+L I + +K F G IS +++ D + Y FV +F DA A Q +
Sbjct: 97 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 158 NGKEVEGKVLKINWAFQ------------SQQVNSDETFN--------LFVGDLNVDVDD 197
G+ + G+ ++ NWA + ++Q++ DE N ++ G + + +
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 198 ATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
+ TF F ++ V D +GY FV F + A A+ + G + G ++
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 270
Query: 258 NWASK 262
W +
Sbjct: 271 YWGKE 275
Score = 57.8 bits (138), Expect = 4e-08
Identities = 28/96 (29%), Positives = 49/96 (50%)
Query: 350 MMRRAPPRVTTAYIGNIPHFAQEHDLIPLLQNFGFIIDFKHYPEKGCCFIKYDTHEQAAL 409
++ ++ P T Y G + E + FG I++ + +P+KG F+++++HE AA
Sbjct: 194 VVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAH 253
Query: 410 CIVALTNFPFQGRNLRTGWGKEKPTFIRPQQQMGPI 445
IV++ +G ++ WGKE I P QQ I
Sbjct: 254 AIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 289
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 114 bits (284), Expect = 4e-25
Identities = 61/184 (33%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 90 GGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHD 149
G + LYVGNL ++ +D + F GS++ K+I D ++ YAFVE+ +
Sbjct: 39 GNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQ 96
Query: 150 ANVAYQTLNGKEVEGKVLKINWAF----QSQQVNSDETFNLFVGDLNVDVDDATLAGTFK 205
A+ A QT+N + + + +K+NWA Q ++++ F++FVGDL+ +VD+ L F+
Sbjct: 97 ASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQ 156
Query: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP 265
F A V+ D + +S+GYGFVS+ ++++A+ A+E G L R +R NWA+++
Sbjct: 157 PFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 216
Query: 266 QQSQ 269
Q +
Sbjct: 217 DQEK 220
Score = 69.7 bits (169), Expect = 9e-12
Identities = 50/202 (24%), Positives = 95/202 (46%), Gaps = 20/202 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
++VG+L +D+ L++ FQ G +S K+I D N+ + Y FV Y + +A A + +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 158 NGKEVEGKVLKINWAFQS----------QQVNSDETFNLFVGDLNVDVDDATLAGTFKE- 206
NG+ + + ++ NWA + + + DE +N GD N V +A ++
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGD-NTSVYVGNIASLTEDE 255
Query: 207 ----FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F SF + + +++ + +GY FV F +D A A+ ++ G+ +R +W
Sbjct: 256 IRQGFASFGR---ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKT 312
Query: 263 REPQQSQQGQRRFNGPASGRGG 284
+ ++ G + S GG
Sbjct: 313 GDTGKTPGGSYGYGYGNSSSGG 334
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 109 bits (272), Expect = 1e-23
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANV 152
++ K LYVGNL + + + L+ Q F G + K+I D + Y FVE+ E A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGND-PYCFVEFHEHRHAAA 61
Query: 153 AYQTLNGKEVEGKVLKINWAFQSQQVNSDET-------------FNLFVGDLNVDVDDAT 199
A +NG+++ GK +K+NWA D + F++FVGDL+ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPQITTED 121
Query: 200 LAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINW 259
+ F F A V+ DM +G+S+GYGFVSF + A+ A++ G L GR +R NW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 260 ASKREP 265
A+++ P
Sbjct: 182 ATRKPP 187
Score = 65.1 bits (157), Expect = 2e-10
Identities = 48/203 (23%), Positives = 90/203 (43%), Gaps = 29/203 (14%)
Query: 81 SAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNY 139
S++ V++TQ R + ++VG+L I + +K F G IS +++ D + Y
Sbjct: 92 SSSTVVSTQ--RSQDHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 149
Query: 140 AFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQ------------SQQVNSDETFN-- 185
FV +F DA A Q + G+ + G+ ++ NWA + ++Q++ DE N
Sbjct: 150 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQS 209
Query: 186 ------LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
++ G + + + + TF F ++ V D +GY FV F + A
Sbjct: 210 SPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAA 263
Query: 240 VAMETKQGFELNGRALRINWASK 262
A+ + G + G ++ W +
Sbjct: 264 HAIVSVNGTTIEGHVVKCYWGKE 286
Score = 57.8 bits (138), Expect = 4e-08
Identities = 28/96 (29%), Positives = 49/96 (50%)
Query: 350 MMRRAPPRVTTAYIGNIPHFAQEHDLIPLLQNFGFIIDFKHYPEKGCCFIKYDTHEQAAL 409
++ ++ P T Y G + E + FG I++ + +P+KG F+++++HE AA
Sbjct: 205 VVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAH 264
Query: 410 CIVALTNFPFQGRNLRTGWGKEKPTFIRPQQQMGPI 445
IV++ +G ++ WGKE I P QQ I
Sbjct: 265 AIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 300
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 108 bits (269), Expect = 2e-23
Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
LY GNLP ++D L Q Q + V+++ ++++ Q +AFV D N+ L
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 158 NGKEVEGKVLKINWAFQ----SQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
+G E G+ LK+N+A + + + + LFVG+L+ V +LAG F+E + A
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGA 206
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
V++D +GRSRGYGFV + + + + A+E+ GFEL GRA+R+N A ++
Sbjct: 207 RVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 58.2 bits (139), Expect = 3e-08
Identities = 27/82 (32%), Positives = 49/82 (58%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
L+ G+L +VD ATLA ++F + V+++ +G+SRG+ FV+ + + ++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 246 QGFELNGRALRINWASKREPQQ 267
G E GRAL++N+A K +P +
Sbjct: 147 DGTEYLGRALKVNFADKPKPNK 168
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 107 bits (268), Expect = 3e-23
Identities = 59/195 (30%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 97 KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQT 156
+ L+V NL +I D+ L F G++ KII + + YAFVE+ + + A +A Q+
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP--YAFVEFSDHNQATLALQS 97
Query: 157 LNGKEVEGKVLKINWAFQSQQVNSDET-------FNLFVGDLNVDVDDATLAGTFKEFPS 209
NG+E+ K + + WAF+ ++ + + F++FVGDL ++D L F +F
Sbjct: 98 HNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGE 157
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
+A ++ D + + +GYGFVS+ ++ A+ A++ G L R +R NWA+++ + +
Sbjct: 158 VSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGE 217
Query: 270 QGQRRFNGPASGRGG 284
+G R + G GG
Sbjct: 218 RGGDRGDRRGGGGGG 232
>7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 464
Score = 104 bits (260), Expect = 3e-22
Identities = 64/200 (32%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANV 152
E K LYVGNL S+ +DLL F G + S KII + + YAF+EY A
Sbjct: 3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQAATT 60
Query: 153 AYQTLNGKEVEGKVLKINWAFQ---SQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPS 209
A +N + K +K+NWA + + ++FVGDL+ +++ TL F F
Sbjct: 61 ALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGE 120
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK-----RE 264
++ D + +S+GY FVSF ++ +A+ A++ G + R++R NW+++ RE
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPRE 180
Query: 265 PQQ-SQQGQRRFNGPASGRG 283
P + QG GP +G G
Sbjct: 181 PSKGGGQGGGMGGGPGNGSG 200
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 101 bits (251), Expect = 3e-21
Identities = 54/144 (37%), Positives = 84/144 (57%), Gaps = 7/144 (4%)
Query: 139 YAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAF--QSQQVNSDETFNLFVGDLNVDVD 196
Y FVE++E DA A +NG+++ GK +K+NWA SQ+ ++ F++FVGDL+ ++
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 197 DATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALR 256
+ F F A V+ DM +G+S+GYGFVSF + A+ A+ G L GR +R
Sbjct: 71 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
Query: 257 INWASKREP-----QQSQQGQRRF 275
NWA+++ P Q++ Q RF
Sbjct: 131 TNWATRKPPAPKSTQENNTKQLRF 154
Score = 58.9 bits (141), Expect = 2e-08
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 350 MMRRAPPRVTTAYIGNIPHFAQEHDLIPLLQNFGFIIDFKHYPEKGCCFIKYDTHEQAAL 409
++ ++ P+ T Y G I + + FG I++ + +PEKG F+++ THE AA
Sbjct: 157 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAH 216
Query: 410 CIVALTNFPFQGRNLRTGWGKEKPTFIRPQQQM 442
IV++ +G ++ WGKE P + QQ+
Sbjct: 217 AIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQV 249
Score = 56.2 bits (134), Expect = 1e-07
Identities = 42/196 (21%), Positives = 83/196 (41%), Gaps = 28/196 (14%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
++VG+L I + +K F G IS +++ D + Y FV ++ DA A +
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 158 NGKEVEGKVLKINWAFQ------------SQQVNSDETFN--------LFVGDLNVDVDD 197
G+ + G+ ++ NWA + ++Q+ ++ N ++ G + + D
Sbjct: 120 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 179
Query: 198 ATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
+ TF F ++ V + +GY FV F + A A+ + G + G ++
Sbjct: 180 QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 233
Query: 258 NWASKREPQQSQQGQR 273
W K P ++ Q+
Sbjct: 234 YW-GKESPDMTKNFQQ 248
>At2g18510 [A] KOG0131 Splicing factor 3b subunit 4
Length = 363
Score = 99.8 bits (247), Expect = 8e-21
Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%)
Query: 83 APVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAF 141
A +L D +YVG L + ++LL + F G + +V + D+ + NY F
Sbjct: 11 ANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGF 70
Query: 142 VEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLA 201
+EY DA+ A + LN ++ GK +++N A Q ++ + D NLF+G+L+ DVD+ L
Sbjct: 71 IEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKK-SLDVGANLFIGNLDPDVDEKLLY 129
Query: 202 GTFKEFPSFIQ-AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
TF F +M D +G SRG+GF+S+ + + A+E+ G L+ R + +++A
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 261 SKREPQQSQQG 271
K++ + + G
Sbjct: 190 YKKDTKGERHG 200
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 97.4 bits (241), Expect = 4e-20
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 18/198 (9%)
Query: 87 ATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFE 146
A G + K +Y+ N + +DD+ LK+ F G SVK++ D N + + FV Y +
Sbjct: 181 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK 240
Query: 147 PHDANVAYQTLNGKEVEGKVLKINWA----------------FQSQQVNSDETFNLFVGD 190
DAN A + +NGKE+ GK++ + A + ++++ + NL++ +
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 300
Query: 191 LNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFEL 250
L+ +DD L F F S A VM ++ GRS+G+GFV F ++A A+ G +
Sbjct: 301 LDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 251 NGRALRINWASKREPQQS 268
+ L + A ++E +++
Sbjct: 359 GSKPLYVALAQRKEERKA 376
Score = 89.0 bits (219), Expect = 1e-17
Identities = 49/176 (27%), Positives = 90/176 (50%), Gaps = 3/176 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+L + + +L + F G + S+++ D + YA+V + +P DA A T+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N ++GK ++I W+ + + N+F+ +L+ +D+ L TF F + + V+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
D S+GY FV F Q+ A A+E G LN R + + R+ ++++ G +
Sbjct: 133 D--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Score = 83.2 bits (204), Expect = 8e-16
Identities = 51/178 (28%), Positives = 97/178 (53%), Gaps = 10/178 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+++ NL KSID+ L F G+I S K++ D+N + YAFV + A+ A + +N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYAFVHFETQEAADKAIEKMN 159
Query: 159 GKEVEGKVLKINWAFQSQQ-------VNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
G + + + + F+S++ + E N+++ + +VDD +L F +F +
Sbjct: 160 GMLLNDRKVFVG-RFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
VM D +G+S+G+GFVS+ + + A A+E G E++G+ + + A K+ +Q++
Sbjct: 219 SVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 52.8 bits (125), Expect = 1e-06
Identities = 30/87 (34%), Positives = 48/87 (54%), Gaps = 1/87 (1%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
+L+VGDL+ DV +A L F + V DM + RS GY +V+F + A+ A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 245 KQGFELNGRALRINWASKREPQQSQQG 271
+ G+ +RI W S+R+P + G
Sbjct: 72 MNFDVIKGKPIRIMW-SQRDPSLRKSG 97
>At1g49600 [R] KOG0118 FOG: RRM domain
Length = 445
Score = 97.1 bits (240), Expect = 5e-20
Identities = 72/206 (34%), Positives = 106/206 (50%), Gaps = 10/206 (4%)
Query: 89 QGGREKSD-KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFE 146
+GG D K L+VG+L +D+ L F +SSVK+I +K + Q Y FVE+
Sbjct: 110 RGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLS 169
Query: 147 PHDANVAYQTLNGKEVEG--KVLKINWA-FQSQQVNSDET---FNLFVGDLNVDVDDATL 200
A A Q+ +G + + ++NWA F + + + E ++FVGDL DV DA L
Sbjct: 170 RSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVL 229
Query: 201 AGTFK-EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINW 259
TF +PS A V+ D +GRS+GYGFV FG++++ AM G + R +R+
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGI 289
Query: 260 AS-KREPQQSQQGQRRFNGPASGRGG 284
A+ KR QQ + A G GG
Sbjct: 290 ATPKRAAAYGQQNGSQALTLAGGHGG 315
Score = 52.0 bits (123), Expect = 2e-06
Identities = 45/217 (20%), Positives = 84/217 (37%), Gaps = 33/217 (15%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIG-GSISSVKIIPDKNS-QECNYAFVEYFEPHDANVA 153
D ++VG+L + D +L + F S+ K++ D N+ + Y FV + + ++ + A
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 154 YQTLNGKEVEGKVLKINWAFQSQ-----QVNSDETFNL--------------------FV 188
+NG + +++ A + Q N + L FV
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 189 GDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGF 248
G L+ DV + L F +F + + +G GFV F + A+ A+ G
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNLNGT 385
Query: 249 ELNGRALRINWASKREPQQSQQGQRRFNGPASGRGGF 285
+ +R++W Q ++NG S G+
Sbjct: 386 VIGKNTVRLSWGRSPNKQWRSDSGNQWNGGYSRGQGY 422
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 96.3 bits (238), Expect = 9e-20
Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 8/193 (4%)
Query: 81 SAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNY 139
SA P++ D +YVG L + + + +L + G + SV + D+ + +
Sbjct: 12 SAGPIV-----ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGF 66
Query: 140 AFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDAT 199
FVE+ DA+ A + LN ++ GK +K+N A + + N D N+FVG+L+ +VD+
Sbjct: 67 GFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA-SAHEKNMDVGANIFVGNLDPEVDEKL 125
Query: 200 LAGTFKEFPSFIQA-HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRIN 258
L TF F +Q +M D+ SG S+G+ F++F + + A+E G L RA+ ++
Sbjct: 126 LYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVS 185
Query: 259 WASKREPQQSQQG 271
+A KR+ + + G
Sbjct: 186 YAFKRDSKGERHG 198
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 96.3 bits (238), Expect = 9e-20
Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
L+VGNLP +D L F+ G++ ++I ++++ Q + FV +A A +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 158 NGKEVEGKVLKINWAF------QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
N EV G+ L +N A + Q D F ++VG+L DVD L F E +
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR 263
A V+ D ++GRSRG+GFV +++ VA+ G L GRA+++N A +R
Sbjct: 235 DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 61.2 bits (147), Expect = 3e-09
Identities = 35/113 (30%), Positives = 63/113 (54%), Gaps = 4/113 (3%)
Query: 162 VEGKVLKINWAFQSQQ----VNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
+ G + ++ +F+S+ E LFVG+L DVD LA F++ + + V++
Sbjct: 87 IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 146
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQ 270
+ + +SRG+GFV+ ++A+ A+E FE+NGR L +N A+ R + +Q
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ 199
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 95.9 bits (237), Expect = 1e-19
Identities = 57/182 (31%), Positives = 91/182 (49%), Gaps = 16/182 (8%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
LYVGNLP +I L Q F G++ V+I+ DK + + FV +A A Q
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 158 NGKEVEGKVLKINWAF---------------QSQQVNSDETFNLFVGDLNVDVDDATLAG 202
N ++ G+ +K+N+ + + D ++ G+L ++ L
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F + P + A V+++ +GRSRG+GF+SF + Q A+ T G E+ GRALR+N AS+
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASE 297
Query: 263 RE 264
RE
Sbjct: 298 RE 299
Score = 53.1 bits (126), Expect = 9e-07
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 180 SDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
S E L+VG+L + + L+ F E + + +++D + RSRG+GFV+ G ++A+
Sbjct: 112 SGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171
Query: 240 VAMETKQGFELNGRALRINW 259
AM+ ++ GR +++N+
Sbjct: 172 EAMQMFNSSQIGGRTVKVNF 191
>At3g19130 [R] KOG0118 FOG: RRM domain
Length = 435
Score = 95.9 bits (237), Expect = 1e-19
Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 97 KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQ 155
K L+VG+L +D+ L F G +SSVK+I +K SQ Y FVE+ A Q
Sbjct: 108 KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 156 TLNGKEVEG--KVLKINWAF----QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKE-FP 208
+G + + +INWA + + V + ++FVGDL+ DV D L TF + +P
Sbjct: 168 NYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYP 227
Query: 209 SFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQS 268
S A V+ D +GRS+GYGFV FG++++ A+ G + R +R+ A+ + +
Sbjct: 228 SVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIAN 287
Query: 269 QQ 270
QQ
Sbjct: 288 QQ 289
>At1g47500 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 95.5 bits (236), Expect = 2e-19
Identities = 68/186 (36%), Positives = 100/186 (53%), Gaps = 12/186 (6%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIGGS--ISSVKIIPDK-NSQECNYAFVEYFEPHD-AN 151
+K ++VG+L +D+ L F I S+K+I +K N Y FVE FE HD A+
Sbjct: 102 NKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVE-FESHDVAD 160
Query: 152 VAYQTLNGKEVEG--KVLKINWAF----QSQQVNSDETFNLFVGDLNVDVDDATLAGTFK 205
Q NG + + ++NWA + + N+ ++FVGDL DV DA L TF
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 206 E-FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
E +PS A V+ D +GRS+GYGFV FG++++ AM G + + RA+RI A+ R+
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Query: 265 PQQSQQ 270
QQ
Sbjct: 281 TNGYQQ 286
Score = 57.0 bits (136), Expect = 6e-08
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 96 DKILYVGNLPKSIDDDLLKQYF-QIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVA 153
D ++VG+L + D LL + F + S+ + K++ D N+ + Y FV + + ++ A
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 154 YQTLNGKEVEGKVLKINWA-------FQSQ---------QVNSDETFN--LFVGDLNVDV 195
+NG + + ++I A +Q Q + +T N +FVG L+ V
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 196 DDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRAL 255
D L F EF + + +G GFV F + A+ A+E G + + +
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 371
Query: 256 RINWASKREPQQSQ 269
R++W R P Q
Sbjct: 372 RLSWG--RNPANKQ 383
>At1g47490 [R] KOG0118 FOG: RRM domain
Length = 432
Score = 95.5 bits (236), Expect = 2e-19
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 12/186 (6%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIGGS--ISSVKIIPDKNSQECN-YAFVEYFEPHD-AN 151
+K ++VG+L +D+ L F G I SVK+I +KN+ Y FVE FE HD A+
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVE-FESHDVAD 158
Query: 152 VAYQTLNGKEVEG--KVLKINWAF----QSQQVNSDETFNLFVGDLNVDVDDATLAGTFK 205
+ NG + + ++NWA + + N+ ++FVGDL+ DV D L TF
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 206 E-FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
E +PS A V+ D +GRS+GYGFV FG++++ AM G + + RA+RI A+ R+
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 265 PQQSQQ 270
QQ
Sbjct: 279 TNGYQQ 284
Score = 55.8 bits (133), Expect = 1e-07
Identities = 48/194 (24%), Positives = 84/194 (42%), Gaps = 28/194 (14%)
Query: 96 DKILYVGNLPKSIDDDLLKQYF-QIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVA 153
D ++VG+L + D+LL + F + S+ + K++ D N+ + Y FV + + ++ A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 154 YQTLNGKEVEGKVLKINWA-------FQSQ---QVNSDET--------FNLFVGDLNVDV 195
+NG + + ++I A +Q Q N T +FVG L+ V
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 196 DDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRAL 255
D L F EF + + +G GFV F + A+ A+E G + + +
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 369
Query: 256 RINWASKREPQQSQ 269
R++W R P Q
Sbjct: 370 RLSWG--RNPANKQ 381
>At5g19350 [R] KOG0118 FOG: RRM domain
Length = 425
Score = 95.1 bits (235), Expect = 2e-19
Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Query: 97 KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQ 155
+ L++G+L +D++ L F G + SVK+I +K Q Y F+E+ A Q
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 156 TLNGKEVEGKVL--KINWAF--QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
T NG ++ G L ++NWA Q+V++ ++FVGDL DV D L TF+ S +
Sbjct: 84 TYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 212 Q-AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQ 270
+ A V+ D +GRS+GYGFV F E+ + AM G + R +RI+ A+ ++ QQ
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 181 DETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQV 240
+E L++GDL VD+ L F + + V+ + +G+ GYGF+ F A+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 241 AMETKQGFELNGRAL--RINWASKREPQQSQQG 271
++T G ++ G L R+NWAS Q+ G
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVDAG 113
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 94.0 bits (232), Expect = 4e-19
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 95 SDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVA 153
+D L+VGNLP ++D L Q F+ G++ V++I DK + + FV + A
Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 154 YQTLNGKEVEGKVLKINWAF-------------QSQQVNSDETFN------------LFV 188
Q NG E++G+ L++N +S +S + ++V
Sbjct: 149 AQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208
Query: 189 GDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGF 248
G+L+ VDD L F E ++A V++D SGRS+G+GFV++ + Q A+++ G
Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA 268
Query: 249 ELNGRALRINWASKREPQQ 267
+L+GR +R++ A R P++
Sbjct: 269 DLDGRQIRVSEAEARPPRR 287
Score = 67.4 bits (163), Expect = 4e-11
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LFVG+L +VD A LA F+ + V++D +GRSRG+GFV+ + + A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 246 QGFELNGRALRINWA---SKREPQQSQQGQRRFNGPASGRGG 284
G+EL+GR LR+N KRE S+ + F SG GG
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGG 194
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 93.6 bits (231), Expect = 6e-19
Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 19/203 (9%)
Query: 89 QGGREKS----DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEY 144
+GG+ + K L + NL S ++ L++ F+ + +K+ ++N + YAF+E+
Sbjct: 474 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEF 530
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQ--SQQVNSDETFNLFVGDLNVDVDDATLAG 202
DA A + N +E+EG+ +++ S S + LFV L+ D + TL
Sbjct: 531 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLK- 589
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
+ F ++A ++ D ++G S+G+GFV F ++ A+ A E + E++G + ++WA
Sbjct: 590 --ESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 647
Query: 263 REPQQSQQGQRRFNGPASGRGGF 285
+ G+ F G GRGGF
Sbjct: 648 K-------GEGGFGGRGGGRGGF 663
Score = 63.2 bits (152), Expect = 8e-10
Identities = 45/182 (24%), Positives = 83/182 (44%), Gaps = 18/182 (9%)
Query: 92 REKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDAN 151
+E+ + L NLP + D LK+ F+ I V K+ + A++E+ DA
Sbjct: 388 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTEADAE 443
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQQVN----------SDETFNLFVGDLNVDVDDATLA 201
++ G E++G+ + + + + Q S E+ L + +L+ + TL
Sbjct: 444 KTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQ 503
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS 261
F E +FI+ Q+G+S+GY F+ F + A+ A+ + E+ GRA+R+
Sbjct: 504 EVF-EKATFIKVP---QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 559
Query: 262 KR 263
R
Sbjct: 560 PR 561
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 93.6 bits (231), Expect = 6e-19
Identities = 52/176 (29%), Positives = 92/176 (51%), Gaps = 7/176 (3%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
L+VGNL ++ L F+ G++ ++I ++ + Q + FV +A A +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 158 NGKEVEGKVLKINWAFQSQQVNS------DETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
N ++ G++L +N A + F ++VG+L DVD+ L F E +
Sbjct: 212 NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV 271
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQ 267
+A V++D ++GRSRG+GFV+ + D+ A+ G L GRA+R+N A +R P++
Sbjct: 272 EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
Score = 63.5 bits (153), Expect = 6e-10
Identities = 36/105 (34%), Positives = 61/105 (57%)
Query: 159 GKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWD 218
G E EG V + + +++ E LFVG+L DV+ LA F++ + A V+++
Sbjct: 125 GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
Query: 219 MQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR 263
++ +SRG+GFV+ D+A+ A+E ++LNGR L +N A+ R
Sbjct: 185 RETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 92.8 bits (229), Expect = 1e-18
Identities = 52/176 (29%), Positives = 92/176 (51%), Gaps = 3/176 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+L + + +L + F G I S+++ D + YA+V + +P DA A T+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N ++GK ++I W+ + + N+F+ +L+ +D+ L TF F + + V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
D S+GYGFV F Q+ A+ A+E G LN R + + R+ ++++ G R
Sbjct: 133 D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Score = 85.1 bits (209), Expect = 2e-16
Identities = 61/212 (28%), Positives = 100/212 (46%), Gaps = 21/212 (9%)
Query: 87 ATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFE 146
A G R K +Y+ N + +DD+ LK F G SVK++ D++ + + FV +
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFER 237
Query: 147 PHDANVAYQTLNGKEVEGKVLKINWAFQS-----------QQVNSD-----ETFNLFVGD 190
DA A +NGKE+ GK + + A + +Q+ D + NL+V +
Sbjct: 238 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 297
Query: 191 LNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFEL 250
L+ +DD L F F + A VM M+ GRS+G+GFV F ++A A+ G +
Sbjct: 298 LDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 355
Query: 251 NGRALRINWASKREPQQSQQGQRRFNGPASGR 282
+ L + A ++E +Q+ + AS R
Sbjct: 356 ATKPLYVALAQRKEERQAHLTNQYMQRMASVR 387
Score = 79.7 bits (195), Expect = 9e-15
Identities = 53/178 (29%), Positives = 93/178 (51%), Gaps = 13/178 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+++ NL KSID+ L F G+I S K++ D+N + Y FV + A A + +N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-GYGFVHFETQEAAERAIEKMN 159
Query: 159 GKEVEGKVLKINWAFQSQQ-------VNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
G + + + + F+S++ + E N+++ + D+DD L F +
Sbjct: 160 GMLLNDRKVFVG-RFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPA---L 215
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
VM D +SG+S+G+GFVSF + AQ A++ G ELNG+ + + A K+ +Q++
Sbjct: 216 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 272
Score = 52.8 bits (125), Expect = 1e-06
Identities = 30/87 (34%), Positives = 48/87 (54%), Gaps = 1/87 (1%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
+L+VGDL+ DV +A L F + V DM + RS GY +V+F + A+ A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 245 KQGFELNGRALRINWASKREPQQSQQG 271
+ G+ +RI W S+R+P + G
Sbjct: 72 MNFDVIKGKPVRIMW-SQRDPSLRKSG 97
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 92.8 bits (229), Expect = 1e-18
Identities = 62/206 (30%), Positives = 99/206 (47%), Gaps = 13/206 (6%)
Query: 84 PVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFV 142
P+L T G + S L V LP+++ D K F G I S K++ DK ++ Y FV
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFV 85
Query: 143 EYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAG 202
Y +P+DA+ A TLNG +++ K +K+++A S D NL+V L + +
Sbjct: 86 NYPDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA--NLYVSGLPKTMSQKEMEQ 143
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F ++ I + ++ D +G SRG GF+ F ++ +A+ A++ G + G A I
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Query: 263 REPQQS----------QQGQRRFNGP 278
P Q Q RR+ GP
Sbjct: 204 NNPSQKTGQALLTHLYQSSARRYAGP 229
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 92.4 bits (228), Expect = 1e-18
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAY 154
D +YVG L + + + LL + F G + + + D+ Q Y FVE+ DA+ A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 155 QTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA- 213
+ +N ++ GK +++N A + N D N+F+G+L+ ++D+ L TF F +Q
Sbjct: 72 KIMNMIKLYGKPIRVNKA-SAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
+M D +G S+GY F++F D + A+E G L R + +++A K++ + + G
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHG 188
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 90.9 bits (224), Expect = 4e-18
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ-ECNYAFVEYFEPHDAN 151
E S LYVG+L S+ + L F GS+SS+++ D ++ YA+V + +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
A + LN ++G++ +I W+ + + + N+F+ +L+ D+D+ L TF F +
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
+ + D ++G+S+G+GFV F E+ A+ A++ G LNG+ + + R+ + SQ
Sbjct: 154 SSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ 210
Score = 74.7 bits (182), Expect = 3e-13
Identities = 51/178 (28%), Positives = 86/178 (47%), Gaps = 7/178 (3%)
Query: 92 REKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDAN 151
R+K +++ NL ID+ L F + G I S KI D+N + + FV + E A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAK 180
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQQVNS--DET----FNLFVGDLNVDVDDATLAGTFK 205
A LNG + G+ + + ++ +S +ET NL+V ++N + D F
Sbjct: 181 EAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA 240
Query: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR 263
+F + A + D G+ +G+GFV++ + + A A+E ELNG L + A K+
Sbjct: 241 KFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297
Score = 72.4 bits (176), Expect = 1e-12
Identities = 53/191 (27%), Positives = 93/191 (47%), Gaps = 17/191 (8%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
LYV N+ D+ ++ F G I S + D + + + FV Y + DA A + LN
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 159 GKEVEGK---------------VLKINW-AFQSQQVNSDETFNLFVGDLNVDVDDATLAG 202
E+ G+ VLK + A++ +++ + NLFV +L+ VDD L
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F + + A VM ++G+S+G+GFV F ++A A+ K + G+ L + A +
Sbjct: 341 EFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399
Query: 263 REPQQSQQGQR 273
++ ++SQ Q+
Sbjct: 400 KDVRRSQLAQQ 410
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 90.5 bits (223), Expect = 5e-18
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ-ECNYAFVEYFEPHDANVAY 154
D +Y G L + + LL + F G + +V + D+ +Q Y FVE+ DA+
Sbjct: 12 DATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGI 71
Query: 155 QTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA- 213
+ +N ++ GK +++N A + Q N D N+F+G+L+V+VD+ L TF F +Q
Sbjct: 72 KIMNMIKLYGKPIRVNKA-SAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTP 130
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
+M D ++G+S+ + F++F + + AM+ G L R + +++A K++ + + G
Sbjct: 131 KIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHG 188
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 90.1 bits (222), Expect = 6e-18
Identities = 48/176 (27%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+LP+ +++ L F G + S+++ D + YA+V + +P DA A T+
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N V K ++I W+ + + N+F+ +L+ +D+ + TF F + + V
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT 123
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
D + G S+GYGFV F ++ A +++ G LNG+ + + R+ ++ + G++
Sbjct: 124 D-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK 178
Score = 80.1 bits (196), Expect = 7e-15
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 18/196 (9%)
Query: 90 GGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHD 149
G + K +YV N + DD+ LK++F+ G I+S K++ ++ + + FV +
Sbjct: 176 GEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEA 235
Query: 150 ANVAYQTLNGKEV-EGKVLKINWAFQS--------------QQVNSDETF--NLFVGDLN 192
A A Q LNGK++ EGK L + A + +Q + F NL+V +L+
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLD 295
Query: 193 VDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNG 252
+DD L F + + A VM D + GRS+G+GFV F +A A+ G +
Sbjct: 296 DTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTELNGRVVGS 354
Query: 253 RALRINWASKREPQQS 268
+ L + A ++E +++
Sbjct: 355 KPLYVALAQRKEERKA 370
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 89.7 bits (221), Expect = 8e-18
Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 22/203 (10%)
Query: 89 QGGREKS----DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEY 144
+GG+ + K L + NL S ++ L++ F+ + +K+ ++N + YAF+E+
Sbjct: 474 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEF 530
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQ--SQQVNSDETFNLFVGDLNVDVDDATLAG 202
DA A + N +E+EG+ +++ S S + LFV L+ D + TL
Sbjct: 531 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLK- 589
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
+ F ++A ++ D ++G S+G+GFV F ++ A+ AME E++G + ++WA
Sbjct: 590 --ESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKEAMEDG---EIDGNKVTLDWAKP 644
Query: 263 REPQQSQQGQRRFNGPASGRGGF 285
+ G+ F G GRGGF
Sbjct: 645 K-------GEGGFGGRGGGRGGF 660
Score = 63.2 bits (152), Expect = 8e-10
Identities = 45/182 (24%), Positives = 83/182 (44%), Gaps = 18/182 (9%)
Query: 92 REKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDAN 151
+E+ + L NLP + D LK+ F+ I V K+ + A++E+ DA
Sbjct: 388 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEFKTEADAE 443
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQQVN----------SDETFNLFVGDLNVDVDDATLA 201
++ G E++G+ + + + + Q S E+ L + +L+ + TL
Sbjct: 444 KTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQ 503
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS 261
F E +FI+ Q+G+S+GY F+ F + A+ A+ + E+ GRA+R+
Sbjct: 504 EVF-EKATFIKVP---QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 559
Query: 262 KR 263
R
Sbjct: 560 PR 561
>Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 360
Score = 89.4 bits (220), Expect = 1e-17
Identities = 50/174 (28%), Positives = 91/174 (51%), Gaps = 3/174 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+L + + +L + F G I S++I DK + YA+V Y +P DA A +TL
Sbjct: 164 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 223
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N ++G+ ++I W+ + + N+F+ +L +D+ L F F + + V
Sbjct: 224 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 283
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
D + +GYGFV F +Q+ A+ A++ G LN R + + + +++++G
Sbjct: 284 DEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERG 335
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 88.6 bits (218), Expect = 2e-17
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPD-KNSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+L + + +L + F G I S+++ D + YA++ + +P DA A T+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N + ++G+ ++I W+ + + N+F+ +L +D+ L TF F + + V
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
D SRG+GFV F + AQ A+ T G LN R + + R ++++ G R
Sbjct: 133 DEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Score = 79.3 bits (194), Expect = 1e-14
Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 11/184 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDA-NVAYQTL 157
+++ NL SID+ L F G+I S K+ D++ + FV +FE H+A A T+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR-GFGFV-HFETHEAAQQAINTM 158
Query: 158 NGKEVEGKVLKINWAFQSQQVNSD------ETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
NG + + + + ++ ++ E N++V +L VDVD+ L F +F +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
VM D SG SR +GFV+F + ++AQ A+ G E++GR L A KR +Q++
Sbjct: 219 SVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL- 276
Query: 272 QRRF 275
+RRF
Sbjct: 277 KRRF 280
Score = 52.4 bits (124), Expect = 1e-06
Identities = 38/137 (27%), Positives = 62/137 (44%), Gaps = 16/137 (11%)
Query: 87 ATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFE 146
A G R +YV NLP +D+ L+ F G + SVK++ D + + FV + +
Sbjct: 181 AELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEK 240
Query: 147 PHDANVAYQTLNGKEVEGKVLKINWAFQS-----------QQVNSD-----ETFNLFVGD 190
+A A +NGKEV G++L A + +Q+ D + NL+V +
Sbjct: 241 HEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 191 LNVDVDDATLAGTFKEF 207
L+ +DD L F +
Sbjct: 301 LDDSIDDDKLRKEFSPY 317
Score = 51.6 bits (122), Expect = 3e-06
Identities = 29/87 (33%), Positives = 48/87 (54%), Gaps = 1/87 (1%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
+L+VGDL+ DV +A L F + V D+ + RS GY +++F + A+ A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 245 KQGFELNGRALRINWASKREPQQSQQG 271
L G+ +RI W S+R+P + G
Sbjct: 72 MNFEMLKGQPIRIMW-SQRDPGLRKSG 97
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 88.6 bits (218), Expect = 2e-17
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+L + + +L + F G I S++I D S NYA+V + DA A T+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N ++GK ++I W+ + + N+FV +L+ +++ L T F + + +V+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
D S+GYGFV F + A+ A++ G LNGR + + R+ ++++ G R
Sbjct: 133 D--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Score = 88.2 bits (217), Expect = 2e-17
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 18/198 (9%)
Query: 87 ATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFE 146
A G R K +Y+ N + +DD+ LK F G SVK++ D++ + + FV +
Sbjct: 181 AELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 147 PHDANVAYQTLNGKEVEGKVLKINWA----------------FQSQQVNSDETFNLFVGD 190
DA A +NGKE+ GK + + A + ++ + NL+V +
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKN 300
Query: 191 LNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFEL 250
L+ +DD L F F + A VM M+ GRS+G+GFV F ++A A+ G +
Sbjct: 301 LDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 251 NGRALRINWASKREPQQS 268
+ L + A ++E +Q+
Sbjct: 359 ATKPLYVALAQRKEERQA 376
Score = 83.2 bits (204), Expect = 8e-16
Identities = 56/179 (31%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDA-NVAYQTL 157
++V NL KSI++ L G+I S ++ D+N + Y FV +FE H+A A + +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK-GYGFV-HFETHEAAERAIKKM 158
Query: 158 NGKEVEGKVLKINWAFQSQQ-------VNSDETFNLFVGDLNVDVDDATLAGTFKEFPSF 210
NG + G+ + + F+S++ + E N+++ + D+DD L F +F
Sbjct: 159 NGMLLNGRKVFVG-QFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 211 IQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
+ VM D +SG+S+G+GFVSF + AQ A++ G ELNG+ + + A K+ +Q++
Sbjct: 218 LSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 88.2 bits (217), Expect = 2e-17
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 5/193 (2%)
Query: 87 ATQGGREKS---DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFV 142
AT GG + + LYVG+L ++ D L F G++ +V++ D + Y +V
Sbjct: 23 ATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYV 82
Query: 143 EYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAG 202
+ P DA A Q LN + GK +++ ++ + V N+F+ +L+ +D L
Sbjct: 83 NFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHD 142
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
TF F + + V D SG+S+GYGFV + ++ AQ A+E G LN + + + +
Sbjct: 143 TFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR 201
Query: 263 REPQQSQQGQRRF 275
R+ + S + +F
Sbjct: 202 RQERDSTANKTKF 214
Score = 79.0 bits (193), Expect = 1e-14
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 5/175 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+++ NL +SID L F G+I S K+ D + Q Y FV+Y A A + LN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 159 GKEVEGKVLKINWAFQSQQ----VNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
G + K + + + Q+ N + N++V +L D L F E+ A
Sbjct: 186 GMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAV 245
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
VM D + G+S+G+GFV+F D A A+E+ G + + + + A K+ ++++
Sbjct: 246 VMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETE 299
Score = 68.9 bits (167), Expect = 2e-11
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+YV NL +S DD LK F G I+S ++ D + + FV + DA A ++LN
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 159 GKEVEGKVLKINWAFQSQQVNSD----------------ETFNLFVGDLNVDVDDATLAG 202
G + + K + A + + ++ ++ NL+V +L+ + D L
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F F + + VM D +G S+G GFV+F ++A AM G + + L + A +
Sbjct: 337 IFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQR 395
Query: 263 REPQQ 267
+E ++
Sbjct: 396 KEDRR 400
Score = 53.1 bits (126), Expect = 9e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 89 QGGREKSDKI----LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEY 144
Q +E +DK LYV NL SI D+ LK+ F G+++S K++ D N FV +
Sbjct: 306 QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAF 365
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKI 169
P +A A L+GK +E K L +
Sbjct: 366 ATPEEATEAMSQLSGKMIESKPLYV 390
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 88.2 bits (217), Expect = 2e-17
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 6/200 (3%)
Query: 81 SAAPVLATQGGREKSDK----ILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQ 135
SA P + GG + LYVG+L ++ D L YF + SV++ D +
Sbjct: 26 SATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNT 85
Query: 136 ECNYAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDV 195
Y +V Y DA A Q LN + GK+++I ++ + NLFV +L+ V
Sbjct: 86 SLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSV 145
Query: 196 DDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRAL 255
D+ TL F + + V D G+SRGYGFV F +D A+ A+E G LN + +
Sbjct: 146 DNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Query: 256 RINWASKREPQQSQQGQRRF 275
+ ++E ++S + +F
Sbjct: 205 FVGPFLRKEERESAADKMKF 224
Score = 78.6 bits (192), Expect = 2e-14
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 21/206 (10%)
Query: 84 PVLATQGGREKSDKI----LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNY 139
P L + +DK+ +YV NL ++ DD LK F GSISS ++ D + + +
Sbjct: 208 PFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCF 267
Query: 140 AFVEYFEPHDANVAYQTLNGKEVE------GKVLK-----INWAFQSQQVNSD-----ET 183
FV + P DA A + LNGK+ + GK K + + + +Q +SD +
Sbjct: 268 GFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDG 327
Query: 184 FNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAME 243
NL+V +L+ V D L F EF + VM D SG S+G GFV+F +A +
Sbjct: 328 LNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLN 386
Query: 244 TKQGFELNGRALRINWASKREPQQSQ 269
G + G+ L + A ++E ++++
Sbjct: 387 EMNGKMVGGKPLYVALAQRKEERRAK 412
Score = 77.4 bits (189), Expect = 4e-14
Identities = 55/191 (28%), Positives = 92/191 (47%), Gaps = 5/191 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
L+V NL KS+D+ L + F G+I S K+ D Q Y FV++ A A + LN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 159 GKEVEGKVLKINWAFQSQQVNSD----ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
GK + K + + + ++ S + N++V +L+ D L TF ++ S A
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAV 255
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQRR 274
VM D G+SR +GFV+F + A A+E G + + + + A K+ ++ + +R
Sbjct: 256 VMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRY 314
Query: 275 FNGPASGRGGF 285
G + G F
Sbjct: 315 EQGSSDGGNKF 325
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 87.8 bits (216), Expect = 3e-17
Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 2/185 (1%)
Query: 89 QGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ-ECNYAFVEYFEP 147
Q G + LYVG+L +++ +L + F G + S+++ D ++ YA+V + +P
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 148 HDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEF 207
DA A T+N + + GK ++I W+ + + N+F+ +L+ +D+ ++ TF F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 208 PSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQ 267
+ + V D + G S+GYGFV F ++ AQ A++ G L G+ + + R +
Sbjct: 144 GNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRN 202
Query: 268 SQQGQ 272
+ G+
Sbjct: 203 RELGE 207
Score = 67.4 bits (163), Expect = 4e-11
Identities = 49/202 (24%), Positives = 97/202 (47%), Gaps = 20/202 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+YV N + + L++ F G+I+S +++ + + + FV + P +A A Q L+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSK-GFGFVAFANPEEAETAVQALH 273
Query: 159 GKEVEGKVLKINWA------------------FQSQQVNSDETFNLFVGDLNVDVDDATL 200
+EG LK++ +++++ + NL+V +L+ VDD L
Sbjct: 274 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGL 333
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
F+ + + A VM D ++GRS+G+GFV F + ++A A+ + + L + A
Sbjct: 334 KKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 261 SKREPQQSQQGQRRFNGPASGR 282
++E +++Q + AS R
Sbjct: 393 QRKEDRRAQLASQYMQRLASMR 414
Score = 52.8 bits (125), Expect = 1e-06
Identities = 32/98 (32%), Positives = 53/98 (53%), Gaps = 1/98 (1%)
Query: 174 QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFG 233
Q+Q +S +L+VGDL+ DV+++ L F + V D + S GY +V+F
Sbjct: 22 QNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQ 81
Query: 234 EQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
+ A+ AM+T L+G+ +RI W S+R+P + G
Sbjct: 82 QPADAERAMDTMNFEALHGKPMRIMW-SQRDPAMRRSG 118
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 87.4 bits (215), Expect = 4e-17
Identities = 47/175 (26%), Positives = 90/175 (50%), Gaps = 2/175 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ-ECNYAFVEYFEPHDANVAYQTL 157
LY+G+L + + +L + F + G + S+++ D S+ YA+V + +P DA A T+
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N + + G+ ++I W+ + N+F+ +L+ +D+ ++ TF F + + V
Sbjct: 119 NFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVAT 178
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQ 272
D G S+GYGFV F + AQ A+E G L+ + + + R + + G+
Sbjct: 179 D-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGE 232
Score = 68.9 bits (167), Expect = 2e-11
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
++V N + +D + L F G I+S ++ D + + FV + + A A + LN
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 159 GKEVEGKVLKINW------------------AFQSQQVNSDETFNLFVGDLNVDVDDATL 200
+EG K++ A + ++V + NL+V ++ D++D L
Sbjct: 300 DSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGL 359
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
F F + A VM D ++GRS+G+GFV F + ++A A+ + + L + A
Sbjct: 360 RDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
Query: 261 SKREPQQSQQGQRRFNGPASGRGG 284
++E +++Q + A+ R G
Sbjct: 419 QRKEDRRAQLASQYMQRLATLRMG 442
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/87 (33%), Positives = 47/87 (53%), Gaps = 1/87 (1%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
+L++GDL+ DV +A L F + V D S S GY +V+F + A+ A++T
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 245 KQGFELNGRALRINWASKREPQQSQQG 271
++GR +RI W S+R+P + G
Sbjct: 118 MNFEVIHGRPMRIMW-SQRDPAARRAG 143
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 87.4 bits (215), Expect = 4e-17
Identities = 47/175 (26%), Positives = 90/175 (50%), Gaps = 2/175 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ-ECNYAFVEYFEPHDANVAYQTL 157
LY+G+L + + +L + F + G + S+++ D S+ YA+V + +P DA A T+
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N + + G+ ++I W+ + N+F+ +L+ +D+ ++ TF F + + V
Sbjct: 119 NFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVAT 178
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQ 272
D G S+GYGFV F + AQ A+E G L+ + + + R + + G+
Sbjct: 179 D-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGE 232
Score = 68.9 bits (167), Expect = 2e-11
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
++V N + +D + L F G I+S ++ D + + FV + + A A + LN
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 159 GKEVEGKVLKINW------------------AFQSQQVNSDETFNLFVGDLNVDVDDATL 200
+EG K++ A + ++V + NL+V ++ D++D L
Sbjct: 300 DSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGL 359
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
F F + A VM D ++GRS+G+GFV F + ++A A+ + + L + A
Sbjct: 360 RDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
Query: 261 SKREPQQSQQGQRRFNGPASGRGG 284
++E +++Q + A+ R G
Sbjct: 419 QRKEDRRAQLASQYMQRLATLRMG 442
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/87 (33%), Positives = 47/87 (53%), Gaps = 1/87 (1%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
+L++GDL+ DV +A L F + V D S S GY +V+F + A+ A++T
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 245 KQGFELNGRALRINWASKREPQQSQQG 271
++GR +RI W S+R+P + G
Sbjct: 118 MNFEVIHGRPMRIMW-SQRDPAARRAG 143
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 87.0 bits (214), Expect = 5e-17
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 13/200 (6%)
Query: 90 GGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPH 148
G E S L V LP+++ + LK F G I S K++ DK Q Y FV Y +P
Sbjct: 32 GNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 149 DANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFP 208
DA A TLNG ++ K +K+++A S D NL+V L + L F ++
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYG 149
Query: 209 SFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQS 268
I + ++ D +G SRG GF+ F ++ +A+ A++ G + G I P Q
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Query: 269 ----------QQGQRRFNGP 278
Q RR+ GP
Sbjct: 210 TNQAILSQLYQSPNRRYPGP 229
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 87.0 bits (214), Expect = 5e-17
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 17/197 (8%)
Query: 88 TQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEP 147
++ G S +YV NLPK I DD LK+ F G ISS ++ D++ ++ FV + P
Sbjct: 216 SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275
Query: 148 HDANVAYQTLNGKEVEGKVLKINWA-------------FQSQQVNSDETF---NLFVGDL 191
A VA + +NG + VL + A F+ ++++ E NL++ +L
Sbjct: 276 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 335
Query: 192 NVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELN 251
+ V+D L F E+ + VM + Q G SRG+GFV++ ++A +AM+ G +
Sbjct: 336 DDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIG 394
Query: 252 GRALRINWASKREPQQS 268
+ L + A ++E +Q+
Sbjct: 395 RKPLYVALAQRKEERQA 411
Score = 86.3 bits (212), Expect = 9e-17
Identities = 49/191 (25%), Positives = 98/191 (50%), Gaps = 2/191 (1%)
Query: 82 AAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAF 141
AA A + + + LYVG+L S+++ L F + ++++ D + YA+
Sbjct: 30 AAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAY 89
Query: 142 VEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLA 201
V + P DA+ A ++LN + + ++I + + N+F+ +L+ +D+ L
Sbjct: 90 VNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALY 149
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI-NWA 260
TF F + + V D+ GRS+GYGFV F +++ AQ A++ G LN + + + ++
Sbjct: 150 ETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 261 SKREPQQSQQG 271
+++ +S+ G
Sbjct: 209 RRQDRARSESG 219
Score = 75.1 bits (183), Expect = 2e-13
Identities = 55/197 (27%), Positives = 91/197 (45%), Gaps = 12/197 (6%)
Query: 84 PVLATQGGREKSDKI-----LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN 138
P+ R+ S ++ +++ NL SID+ L + F G+I S K+ D +
Sbjct: 114 PIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKG 173
Query: 139 YAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDET------FNLFVGDLN 192
Y FV++ + A A LNG + K + + + Q E+ N++V +L
Sbjct: 174 YGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLP 233
Query: 193 VDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNG 252
++ D L TF ++ A VM D QSG SR +GFV+F + A VA+E G L
Sbjct: 234 KEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGE 292
Query: 253 RALRINWASKREPQQSQ 269
L + A K+ ++ +
Sbjct: 293 DVLYVGRAQKKSDREEE 309
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 86.7 bits (213), Expect = 7e-17
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 2/178 (1%)
Query: 81 SAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NY 139
+A A G ++ LYVG+L ++ D L + F G + SV++ D ++ Y
Sbjct: 29 AAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGY 88
Query: 140 AFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDAT 199
+V Y P DA+ A LN + G+ +++ ++ + + N+F+ +L+ +D
Sbjct: 89 GYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKA 148
Query: 200 LAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
L TF F + V D SG+S+GYGFV + + AQ A++ G LN + + +
Sbjct: 149 LHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 71.6 bits (174), Expect = 2e-12
Identities = 51/179 (28%), Positives = 86/179 (47%), Gaps = 5/179 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+++ NL KSID L + F G I S K+ D + Q Y FV+Y A A LN
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 159 GKEVEGKVLKIN-WAFQSQQVNSDETF---NLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
G + K + + + + Q+ S E N++V +L+ + D L F EF
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
+M D + G+S+G+GFV+F D A A++ G + + + A K+ ++++ Q+
Sbjct: 255 IMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQK 312
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/187 (26%), Positives = 83/187 (43%), Gaps = 17/187 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+YV NL +S+ D+ L + F G +S I+ D + + FV + DA A LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 159 GKEVEGKVLKINWAFQSQQ----------------VNSDETFNLFVGDLNVDVDDATLAG 202
GK + K + A + + + + NL+V +L+ V D L
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F F + VM D SG SRG GFV+F ++A A+ G + + L + A +
Sbjct: 346 HFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Query: 263 REPQQSQ 269
+E ++++
Sbjct: 405 KEDRKAR 411
Score = 55.5 bits (132), Expect = 2e-07
Identities = 31/89 (34%), Positives = 47/89 (51%), Gaps = 1/89 (1%)
Query: 183 TFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAM 242
T +L+VGDL+ V D+ L F + + V DM + RS GYG+V++ A A+
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 243 ETKQGFELNGRALRINWASKREPQQSQQG 271
LNGRA+R+ + S R+P + G
Sbjct: 104 NELNFMALNGRAIRVMY-SVRDPSLRKSG 131
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 86.3 bits (212), Expect = 9e-17
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 2/188 (1%)
Query: 83 APVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAF 141
A +AT G + LYVG L S+ + +L + F G ++S+++ D + YA+
Sbjct: 66 ASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 142 VEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLA 201
V + D A LN ++G+ +I W+ + + T N+F+ +L+ +D+ L
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALH 185
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS 261
TF F + V D + G ++GYGFV F + A A+E G LN + + +
Sbjct: 186 DTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHV 244
Query: 262 KREPQQSQ 269
R +QS+
Sbjct: 245 SRRERQSK 252
Score = 80.5 bits (197), Expect = 5e-15
Identities = 53/187 (28%), Positives = 88/187 (46%), Gaps = 17/187 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+Y+ NL I + F G I+S+ ++ D+N + + FV Y A A LN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 159 GKEVEGKVLKINWA----------------FQSQQVNSDETFNLFVGDLNVDVDDATLAG 202
KE +GK L + A + +++N + NLF+ +L +VDD L
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F F + A +M D Q G+S+G+GFV + ++A A+ L G+ L + A +
Sbjct: 383 EFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441
Query: 263 REPQQSQ 269
+E ++SQ
Sbjct: 442 KEVRRSQ 448
Score = 64.7 bits (156), Expect = 3e-10
Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+++ NL +ID+ L F G I S K+ D+ Y FV + AN A + +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 159 GKEVEGKVLKINWAFQSQQVNSD------ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQ 212
G + K + + ++ S N+++ +L+ ++ + + F +F
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 213 AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQ 272
++ D Q+ + RG+GFV++ + AQ A++ E G+ L + A K+ ++ + +
Sbjct: 290 LSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRK 348
Query: 273 R 273
R
Sbjct: 349 R 349
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 86.3 bits (212), Expect = 9e-17
Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
LYVG+L S+ + +L F S++SV++ D +S + Y + + DAN+A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N + GK++++ W+ ++ + N+FV +L V +A L FK+F + + V
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMET 244
++ G+SRGYGFV F ++D A A++T
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQT 171
Score = 80.9 bits (198), Expect = 4e-15
Identities = 55/187 (29%), Positives = 92/187 (48%), Gaps = 17/187 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
LY+ NL + +DLL++ F G I S+ I D+N YAFV + P DA A +T+N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 159 GKEVEGKVLKINWAFQ----------------SQQVNSDETFNLFVGDLNVDVDDATLAG 202
G + K L + A + +Q + N++V ++NV V + L
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F + + +M D + G+S+G+GFV F ++A A++T G +G+ L + A K
Sbjct: 323 HFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQK 381
Query: 263 REPQQSQ 269
+E ++ Q
Sbjct: 382 KEDRKMQ 388
Score = 76.6 bits (187), Expect = 7e-14
Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 3/171 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
++V NLP+S+ + +L+ F+ G+I S K+ ++ + Y FV++ + A+ A QTLN
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 159 GKEVEGKVLKI-NWAFQSQQVNSDETF-NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVM 216
V K + + + ++ +V +E + NL++ +L+ DV + L F EF + +
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIA 233
Query: 217 WDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQ 267
D ++ RGY FV+F + A+ A ET G + + L + A K+ ++
Sbjct: 234 KD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Score = 61.2 bits (147), Expect = 3e-09
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 179 NSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQA 238
+S T +L+VGDL+ V + L F EF S + D SGRS YG+ +F + A
Sbjct: 19 SSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDA 78
Query: 239 QVAMETKQGFELNGRALRINWASKREPQQSQQG 271
+A+E K LNG+ +R+ W S R P + G
Sbjct: 79 NLAIEKKNNSLLNGKMIRVMW-SVRAPDARRNG 110
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 85.9 bits (211), Expect = 1e-16
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 38/184 (20%)
Query: 90 GGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHD 149
G + LYVGNL ++ +D + F GS++ K+I D+
Sbjct: 39 GNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------- 81
Query: 150 ANVAYQTLNGKEVEGKVLKINWAF----QSQQVNSDETFNLFVGDLNVDVDDATLAGTFK 205
+K+NWA Q ++++ F++FVGDL+ +VD+ L F+
Sbjct: 82 -----------------MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQ 124
Query: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP 265
F A V+ D + +S+GYGFVS+ ++++A+ A+E G L R +R NWA+++
Sbjct: 125 PFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 184
Query: 266 QQSQ 269
Q +
Sbjct: 185 DQEK 188
Score = 69.7 bits (169), Expect = 9e-12
Identities = 50/202 (24%), Positives = 95/202 (46%), Gaps = 20/202 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEYFEPHDANVAYQTL 157
++VG+L +D+ L++ FQ G +S K+I D N+ + Y FV Y + +A A + +
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 158 NGKEVEGKVLKINWAFQS----------QQVNSDETFNLFVGDLNVDVDDATLAGTFKE- 206
NG+ + + ++ NWA + + + DE +N GD N V +A ++
Sbjct: 165 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGD-NTSVYVGNIASLTEDE 223
Query: 207 ----FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F SF + + +++ + +GY FV F +D A A+ ++ G+ +R +W
Sbjct: 224 IRQGFASFGR---ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKT 280
Query: 263 REPQQSQQGQRRFNGPASGRGG 284
+ ++ G + S GG
Sbjct: 281 GDTGKTPGGSYGYGYGNSSSGG 302
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 85.5 bits (210), Expect = 2e-16
Identities = 53/181 (29%), Positives = 98/181 (53%), Gaps = 10/181 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+++ NL KSID+ L ++F G I S K++ D + YAFV + A+ A + +N
Sbjct: 217 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK-GYAFVHFQNQSAADRAIEEMN 275
Query: 159 GKEVEGKVLKINWAFQSQQ-------VNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
GK ++G + + F++++ + E N+++ + D+DD L F ++ +
Sbjct: 276 GKLLKGCKVFVG-RFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 334
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
VM D SG+S+G+GFVSF + A+ A+E G ++NG+ + + A K+ +Q++
Sbjct: 335 SVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 393
Query: 272 Q 272
Q
Sbjct: 394 Q 394
Score = 83.2 bits (204), Expect = 8e-16
Identities = 53/191 (27%), Positives = 94/191 (48%), Gaps = 11/191 (5%)
Query: 88 TQGGREKSDKI--------LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECN 138
T G++K + LYVG+L + +DLL + F G + S++I D+ +
Sbjct: 110 THSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLG 169
Query: 139 YAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDA 198
YA+V + + DA A T+N ++GK +++ W+ + + N+F+ +L+ +D+
Sbjct: 170 YAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNK 229
Query: 199 TLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRIN 258
TL F F + + VM D Q S+GY FV F Q A A+E G L G + +
Sbjct: 230 TLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVG 287
Query: 259 WASKREPQQSQ 269
R+ ++++
Sbjct: 288 RFKNRKDREAE 298
Score = 70.5 bits (171), Expect = 5e-12
Identities = 43/180 (23%), Positives = 81/180 (44%), Gaps = 18/180 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+Y+ N +DD+ LK F G SVK++ D + + + FV + A A + +N
Sbjct: 309 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 368
Query: 159 GKEVEGKVLKINWA----------------FQSQQVNSDETFNLFVGDLNVDVDDATLAG 202
G+++ G+++ + A + +++ + L++ +L+ +DD L
Sbjct: 369 GRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRN 428
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F F S + VM + G+S+G+G + F + A AM G L + L I A +
Sbjct: 429 EFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 486
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 84.3 bits (207), Expect = 4e-16
Identities = 50/201 (24%), Positives = 99/201 (48%), Gaps = 13/201 (6%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
++VG L SIDD+ LK+ F+ G + ++I ++ + Y +V++ A A Q +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDE-----------TFNLFVGDLNVDVDDATLAGTFKE 206
GKE++G+ + + + N+D + LF+G+L+ + D + F +
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 289
Query: 207 FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQ 266
+ + ++ + +G+G+V F + A+ A++ QG ++ R +R++++S R
Sbjct: 290 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNN 349
Query: 267 Q-SQQGQRRFNGPASGRGGFR 286
+ G R F G GRGG R
Sbjct: 350 DGGRGGSRGFGGRGGGRGGNR 370
Score = 57.4 bits (137), Expect = 5e-08
Identities = 28/100 (28%), Positives = 56/100 (56%)
Query: 180 SDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
++E +FVG L+ +DD L F+ I A V+++ + RSRGYG+V F + A+
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 240 VAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPA 279
A++ QG E++GR + + ++ + + + ++ + P+
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPS 263
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 84.0 bits (206), Expect = 5e-16
Identities = 55/181 (30%), Positives = 93/181 (50%), Gaps = 7/181 (3%)
Query: 97 KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQ 155
+ L++G+L +D++ L F G + S K+I +K + + Y F+E+ A Q
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 156 TLNGKEVEG---KVLKINWAFQSQQVNSDET--FNLFVGDLNVDVDDATLAGTFK-EFPS 209
T N + ++ ++NWA S D++ + +FVGDL DV D L TF+ +PS
Sbjct: 122 TFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPS 181
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
A V+ D +GR++GYGFV F ++ + AM G + R +RI A+ ++ Q
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 270 Q 270
+
Sbjct: 242 R 242
Score = 57.0 bits (136), Expect = 6e-08
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 27/198 (13%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIG-GSISSVKIIPDK-NSQECNYAFVEYFEPHDA 150
+ D ++VG+L + D +L + F+ S+ K++ D+ + Y FV + + +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 151 NVAYQTLNGKEVEGKVLKINWAFQSQQV-----------------NSDETFNLFVGDLNV 193
A +NG + ++I A + V N +FVG L+
Sbjct: 211 IRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDA 270
Query: 194 DVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGR 253
V D L F ++ + + + GFV F E+ A+ A+ G +L G
Sbjct: 271 SVTDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGVQLGGT 324
Query: 254 ALRINWASKREPQQSQQG 271
+R++W R P Q G
Sbjct: 325 TVRLSWG--RSPSNKQSG 340
Score = 50.1 bits (118), Expect = 7e-06
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 176 QQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQ 235
Q +DE L++GDL +D+ L G F + A V+ + Q+G+ GYGF+ F
Sbjct: 54 QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASH 113
Query: 236 DQAQVAMETKQGFELNG---RALRINWAS 261
A+ ++T + + R+NWAS
Sbjct: 114 AAAERVLQTFNNAPIPSFPDQLFRLNWAS 142
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 83.6 bits (205), Expect = 6e-16
Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 23/202 (11%)
Query: 81 SAAPV------LATQGGREKSD-KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK- 132
SAAP+ + +Q SD K L++G+L + +D++ + F G +S K+I +K
Sbjct: 37 SAAPLGQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKL 96
Query: 133 NSQECNYAFVEYFEPHDANVAYQTLNGKEVEG--KVLKINWA--------FQSQQVNSDE 182
Q Y F+E+ A QT NG + + ++NWA FQ++ D
Sbjct: 97 TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTE--GPDH 154
Query: 183 TFNLFVGDLNVDVDDATLAGTFKE-FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVA 241
T +FVGDL +V D L+ TFK + S A V+ D +GRS+GYGFV F ++++ A
Sbjct: 155 T--IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 242 METKQGFELNGRALRINWASKR 263
M G + R +RI A+ +
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANK 234
Score = 63.5 bits (153), Expect = 6e-10
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQ-IGGSISSVKIIPDKNS-QECNYAFVEYFEPHDA 150
E D ++VG+L + D +L F+ + GS+ K++ D+ + + Y FV + + ++
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 151 NVAYQTLNGKEVEGKVLKINWA------------FQSQQV-----NSDETFNLFVGDLNV 193
A +NG+ + ++I A +Q+ Q N +FVG L+
Sbjct: 210 MRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDA 269
Query: 194 DVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGR 253
+V D L F +F + + + GFV + + A+ A+ G +L G+
Sbjct: 270 NVTDDELKSIFGQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGTQLGGQ 323
Query: 254 ALRINWA---SKREPQQSQQGQRRFNGPASGRGGF 285
++R++W +K+ Q G + P +GG+
Sbjct: 324 SIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGY 358
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 83.2 bits (204), Expect = 8e-16
Identities = 44/166 (26%), Positives = 87/166 (51%), Gaps = 1/166 (0%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
LY G+L + + L F+ ++ SV++ D+N + YA++ + P+DA A + LN
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 159 GKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWD 218
+ + ++I + + N+F+ +L+ +D+ L TF F + + V D
Sbjct: 111 YTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD 170
Query: 219 MQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
+ +GRS+GYGFV F +++ AQ A++ G +N + + + +R+
Sbjct: 171 V-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQ 215
Score = 75.9 bits (185), Expect = 1e-13
Identities = 60/203 (29%), Positives = 98/203 (47%), Gaps = 21/203 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+YV NLPK I +D L++ F G ISS ++ D++ + FV + A A + +N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 159 GKEVEGKVLKINWA-------------FQSQQVNSDETF---NLFVGDLNVDVDDATLAG 202
G + VL + A F+ +++N E NL++ +L+ VDD L
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F E+ + + VM + Q G SRG+GFV++ ++A A+ G + + L I A +
Sbjct: 351 MFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQR 409
Query: 263 REPQ----QSQQGQRRFNGPASG 281
+E + Q+ Q R GP SG
Sbjct: 410 KEDRRAHLQALFSQIRAPGPMSG 432
Score = 74.7 bits (182), Expect = 3e-13
Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 13/203 (6%)
Query: 84 PVLATQGGREKSDKI-----LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN 138
P+ R+ S ++ +++ NL SID+ L + F G+I S K+ D +
Sbjct: 118 PIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKG 177
Query: 139 YAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDET------FNLFVGDLN 192
Y FV++ + A A LNG + K + + + Q+ DE N++V +L
Sbjct: 178 YGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLP 237
Query: 193 VDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNG 252
++ + L TF +F A VM D QSG SR +GFV+F + A A+E G L
Sbjct: 238 KEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Query: 253 RALRINWASKREPQQSQQGQRRF 275
L + A K+ ++ ++ +R+F
Sbjct: 297 DVLYVGRAQKKS-EREEELRRKF 318
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 82.8 bits (203), Expect = 1e-15
Identities = 58/204 (28%), Positives = 92/204 (44%), Gaps = 13/204 (6%)
Query: 86 LATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEY 144
+ T + S L V LP+++ + + F G I S K++ DK Q Y FV Y
Sbjct: 35 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
+P DA A TLNG ++ K +K+++A S D NL+V L + L F
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--NLYVSGLPKTMTQKELEQLF 152
Query: 205 KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
++ I + ++ D +G SRG GF+ F ++ +A+ A++ G + +G I
Sbjct: 153 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN 212
Query: 265 PQQS----------QQGQRRFNGP 278
P Q Q RR+ GP
Sbjct: 213 PSQKSSQALLSQLYQSPNRRYPGP 236
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 82.0 bits (201), Expect = 2e-15
Identities = 56/191 (29%), Positives = 88/191 (45%), Gaps = 13/191 (6%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
L V LP+++ D L+ F G + S K+I DK + Y FV Y DA A TL
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
NG ++ K +K+++A S +V D NL++ L + + F F I + V+
Sbjct: 82 NGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ-------- 269
D +G SRG F+ F ++ +A+ A+ + G + G + I P Q++
Sbjct: 140 DQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPIAVKFAANPNQNKNVALLSQL 199
Query: 270 --QGQRRFNGP 278
RRF GP
Sbjct: 200 YHSPARRFGGP 210
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 81.6 bits (200), Expect = 2e-15
Identities = 57/179 (31%), Positives = 90/179 (49%), Gaps = 9/179 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
L++G+L +D++ L F + G ++ K+I +K N Y F+E+ A QT
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 158 NGKEVEG--KVLKINWAF----QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
NG + + ++NWA + +Q E +FVGDL DV D L TFK S +
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPE-HTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 212 Q-AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
+ A V+ D +GRS+GYGFV F ++ + AM G + R +R A+ ++P Q
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQ 259
Score = 60.8 bits (146), Expect = 4e-09
Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 24/203 (11%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQ-IGGSISSVKIIPDKNS-QECNYAFVEYFEPHDA 150
E + ++VG+L + D +L + F+ + S+ K++ D+ + + Y FV + + +
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 151 NVAYQTLNGKEVEGKVLKINWA------------FQSQQVNSDET----FNLFVGDLNVD 194
A +NG+ + ++ A +Q+ Q NS E+ +FVG ++
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQS 288
Query: 195 VDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRA 254
V + L F +F + + + GFV + + A+ A+ G +L G++
Sbjct: 289 VTEDDLKSVFGQFGELVHVKIP------AGKRCGFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 255 LRINWASKREPQQSQQGQRRFNG 277
+R++W +Q+Q Q ++ G
Sbjct: 343 IRLSWGRSPSNKQTQPDQAQYGG 365
>SPAC17A2.09c [R] KOG0118 FOG: RRM domain
Length = 632
Score = 80.9 bits (198), Expect = 4e-15
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 11/194 (5%)
Query: 81 SAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQE---C 137
S+ P+ G K L++G+L +D ++Q + +VK++ K S
Sbjct: 69 SSTPLQDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLI 128
Query: 138 NYAFVEYFEPHDANVAYQTLNGKEVEGK--VLKINWAF-----QSQQVNSDETFNLFVGD 190
+Y FV++ A A N + G K+NWA + V+ D F++FVGD
Sbjct: 129 SYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGD 188
Query: 191 LNVDVDDATLAGTFKE-FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFE 249
L +D+ L TF+ +PS A ++ D +G SR YGFV F + + Q A+ QG+
Sbjct: 189 LLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYL 248
Query: 250 LNGRALRINWASKR 263
GR LRI+ AS +
Sbjct: 249 CQGRPLRISVASPK 262
>Hs8923460 [R] KOG0118 FOG: RRM domain
Length = 287
Score = 79.0 bits (193), Expect = 1e-14
Identities = 57/170 (33%), Positives = 92/170 (53%), Gaps = 9/170 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQ-IGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQT 156
L++G+L +D++ + + F +G ++ SVKII ++ Y FVE+ + A
Sbjct: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64
Query: 157 LNGKEVEG----KVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF-KEFPSFI 211
+NGK + G K K+N+A +Q ++ ++LFVGDL DVDD L F K +PS
Sbjct: 65 INGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 124
Query: 212 QAHVMWDMQSGRSRGYGFVSF-GEQDQAQVAMETKQGFELNGRALRINWA 260
V+ D Q+G S+GYGFV F E +Q + E + L + +R++ A
Sbjct: 125 GGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 78.2 bits (191), Expect = 3e-14
Identities = 52/188 (27%), Positives = 94/188 (49%), Gaps = 14/188 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN 151
E+ + ++ L I L+++F G + V++I D+NS+ A+VE+ +
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQ-----------QVNSDETFNLFVGDLNVDVDDATL 200
+A L G+ V G + + A Q++ Q S L+VG L+ ++ + L
Sbjct: 209 LAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDML 266
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
G F+ F +M D ++GRS+GYGF++F + + A+ A+E GFEL GR +++
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 261 SKREPQQS 268
++R S
Sbjct: 327 TERTDASS 334
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 76.6 bits (187), Expect = 7e-14
Identities = 55/205 (26%), Positives = 101/205 (48%), Gaps = 19/205 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
++VG L ++DD L Q F+ G+I ++I D S + Y +V++ P A A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 158 NGKEVEGKVLKINWA---------FQSQQVN------SDETFNLFVGDLNVDVDDATLAG 202
KE++G+++ ++ + + Q+ S+ + +FVG+L+ + + L+
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F + D QSGR +G+G+V+F + D A+ +E G + GR R+++++
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTP 443
Query: 263 REPQQSQQGQRRFNGPA--SGRGGF 285
R S+ G+ F G GRGGF
Sbjct: 444 RTGGGSRGGRGGFGGRGGFGGRGGF 468
Score = 66.6 bits (161), Expect = 8e-11
Identities = 34/96 (35%), Positives = 57/96 (58%)
Query: 179 NSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQA 238
+S+ET +FVG L+ +VDD L F+E+ + + A V+ D QSGRS+GYG+V F + A
Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317
Query: 239 QVAMETKQGFELNGRALRINWASKREPQQSQQGQRR 274
+ A+ E++GR + ++ ++ R Q+R
Sbjct: 318 KAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQR 353
>YHR086w [R] KOG0118 FOG: RRM domain
Length = 523
Score = 75.9 bits (185), Expect = 1e-13
Identities = 69/231 (29%), Positives = 110/231 (46%), Gaps = 37/231 (16%)
Query: 81 SAAPVLATQGGREKS----DKILYVGNLPKSIDDDLLKQYF-QIGGSISSVKIIPD---- 131
S+ VL+ QG S LY+G+L + D + ++Q + +G + +V+++ +
Sbjct: 34 SSTSVLSLQGASNVSLGTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLN 93
Query: 132 ---------KNSQECNYAFVEY-FEPHDANVAYQTLNGKEVEG---KVLKINWAFQS--- 175
KN+Q Y FV++ H AN + NG + K LK+NWA S
Sbjct: 94 NGSRSSMGPKNNQ--GYCFVDFPSSTHAANALLK--NGMLIPNFPNKKLKLNWATSSYSN 149
Query: 176 -----QQVNSDETFNLFVGDLNVDVDDATLAGTF-KEFPSFIQAHVMWDMQSGRSRGYGF 229
V S ++FVGDL +V ++ L F + S A ++ D +G S+GYGF
Sbjct: 150 SNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGF 209
Query: 230 VSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPAS 280
V F D+ Q+A+ QG LNGRA+++ S + QQ G +N +S
Sbjct: 210 VKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQ--QQHVSGNNDYNRSSS 258
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 75.5 bits (184), Expect = 2e-13
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 14/183 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN 151
E+ + ++ L I L+ +F G + V+II D+NS+ A+VE+ E
Sbjct: 128 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 187
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQ-----------QVNSDETFNLFVGDLNVDVDDATL 200
+A L G+ + G + + A Q++ Q + L+VG L+ ++ + L
Sbjct: 188 LAIG-LTGQRLLGVPIIVQ-ASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDML 245
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
G F+ F +M D +GRS+GYGF++F + + A+ A+E GFEL GR +R+
Sbjct: 246 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 305
Query: 261 SKR 263
++R
Sbjct: 306 TER 308
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 75.5 bits (184), Expect = 2e-13
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 14/183 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN 151
E+ + ++ L I L+ +F G + V+II D+NS+ A+VE+ E
Sbjct: 146 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 205
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQ-----------QVNSDETFNLFVGDLNVDVDDATL 200
+A L G+ + G + + A Q++ Q + L+VG L+ ++ + L
Sbjct: 206 LAIG-LTGQRLLGVPIIVQ-ASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDML 263
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
G F+ F +M D +GRS+GYGF++F + + A+ A+E GFEL GR +R+
Sbjct: 264 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 323
Query: 261 SKR 263
++R
Sbjct: 324 TER 326
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 75.5 bits (184), Expect = 2e-13
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
L + LP+ + + ++ F G I S K++ DK Q Y FV Y DA A +
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
NG ++ K +K+++A S + + NL+V + + L F+ F I + ++
Sbjct: 104 NGLRLQNKTIKVSYARPSN--DQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILS 161
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQG 247
D +G S+G GFV F ++D+A VA++T G
Sbjct: 162 DNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 50.1 bits (118), Expect = 7e-06
Identities = 33/88 (37%), Positives = 45/88 (50%)
Query: 82 AAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAF 141
+A V AT + + L+V NL DD LL Q F G+I +VKI+ D Q YAF
Sbjct: 359 SASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAF 418
Query: 142 VEYFEPHDANVAYQTLNGKEVEGKVLKI 169
V +A A +LNG + GK L++
Sbjct: 419 VSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 74.7 bits (182), Expect = 3e-13
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LFVG L+ DD++L F F +A V+ D ++GRSRG+GFVSF +D A A++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 246 QGFELNGRALRINWASKRE--PQQSQQGQRRFNGPASGRGGF 285
G ELNGR +R+N A++R P+ S G + G G GG+
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRSSFGGGGGYGG--GGGGGY 136
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 74.7 bits (182), Expect = 3e-13
Identities = 54/189 (28%), Positives = 91/189 (47%), Gaps = 5/189 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPD-KNSQECNYAFVEYFEPHDANVAYQTL 157
L + LP+ + D L F G I++ KI+ D K Y FV+Y D+ A Q L
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
NG V K LK+++A Q D NL+V +L+ +++D L F + +Q +++
Sbjct: 155 NGFYVRNKRLKVSYARPGGQSIKDT--NLYVINLSRNINDDMLDRIFSPYGLIVQRNILR 212
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGF--ELNGRALRINWASKREPQQSQQGQRRF 275
D +GR RG FV + ++++AQ A++ E + + + A + ++ Q +
Sbjct: 213 DKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQI 272
Query: 276 NGPASGRGG 284
G G GG
Sbjct: 273 GGGNGGGGG 281
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 73.9 bits (180), Expect = 5e-13
Identities = 57/208 (27%), Positives = 100/208 (47%), Gaps = 22/208 (10%)
Query: 87 ATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFE 146
A G + S + YV NL +++ DD L F G++SSV ++ D + + FV +
Sbjct: 193 AAMAGNQDSTNV-YVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCN 251
Query: 147 PHDANVAYQTLNGKEVEGKVLKINWAFQS-------QQVNSDETF--------NLFVGDL 191
P +A A ++L G ++ K L + A + +Q SD NL+V +L
Sbjct: 252 PENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNL 311
Query: 192 NVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELN 251
+ +++ L F + + A VM ++GRS+G+GFV F ++++ A GF ++
Sbjct: 312 SESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370
Query: 252 GRALRINWASKREP-----QQSQQGQRR 274
G+ + + A ++E QQ Q Q R
Sbjct: 371 GKPIVVRVAERKEDRIKRLQQYFQAQPR 398
Score = 60.1 bits (144), Expect = 7e-09
Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 6/179 (3%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+L + + L F + + SV + + + YA++ + P A+ A L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 158 NGKEVEGKVLKINWAFQS---QQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
N +++GK ++I W+ + ++ NL+V +L+ + + L F F S +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
V+ ++G+S+G+GFV F + A A G + G+ L + ++ + + G +
Sbjct: 143 VV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQ 199
>At5g40490 [R] KOG0118 FOG: RRM domain
Length = 423
Score = 73.6 bits (179), Expect = 6e-13
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 6/198 (3%)
Query: 90 GGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHD 149
GG + + KI G ++ + LK + + G SV + K Q + FV Y +
Sbjct: 36 GGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSV 95
Query: 150 ANVAYQT---LNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKE 206
+ Q + GK+VE +K S N +T +FVG + VDD F +
Sbjct: 96 VDKVIQDNHIIIGKQVE---IKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ 152
Query: 207 FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQ 266
F + +M D +GRSRG+GFV++ +D + EL+G + I A ++P
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPN 212
Query: 267 QSQQGQRRFNGPASGRGG 284
+RF S GG
Sbjct: 213 SVTTPSKRFGDSRSNFGG 230
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 73.6 bits (179), Expect = 6e-13
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LF+G L+ DDA+L F F + A V+ D ++GRSRG+GFV+F ++ A A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 246 QGFELNGRALRINWASKR-EPQQSQQGQRRFNGPASGRGG 284
G ELNGR +R+N A+ R ++ G ++G G GG
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGGGGYGG 136
>7299788 [R] KOG0118 FOG: RRM domain
Length = 385
Score = 73.6 bits (179), Expect = 6e-13
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 8/192 (4%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPD-KNSQECNYAFVEYFEPHDANVAYQTL 157
L++G L DD LK +F+ G+I V ++ D K + + F+ Y + + + A Q
Sbjct: 26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QNA 84
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
+++G+ ++ A Q+++S LFVG L D D+ L FK+F +
Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSV 144
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
+++ D +G+ RG+ F+ F + D + K + + L + A ++ Q G
Sbjct: 145 NIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKT-HSIKNKTLDVKKAIAKQDMDRQGGGG 203
Query: 274 RFNGP-ASGRGG 284
GP A GRGG
Sbjct: 204 GRGGPRAGGRGG 215
>7301687 [R] KOG0118 FOG: RRM domain
Length = 365
Score = 72.8 bits (177), Expect = 1e-12
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ LK +F+ G+I V ++ D ++ + F+ Y + A ++
Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSR 92
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K ++G+V++ A Q ++S LFVG L D D+ ++ F+ F + +
Sbjct: 93 PHK-IDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
+++ D ++G+ RG+ FV F + D + KQ +LNG+ + + A ++ Q G
Sbjct: 152 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQ-HQLNGKMVDVKKALPKQNDQQGGGGG 210
Query: 274 RFNGPASGRGGFR 286
R GP GG R
Sbjct: 211 R-GGPGGRAGGNR 222
>7301686 [R] KOG0118 FOG: RRM domain
Length = 363
Score = 72.8 bits (177), Expect = 1e-12
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ LK +F+ G+I V ++ D ++ + F+ Y + A ++
Sbjct: 32 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSR 91
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K ++G+V++ A Q ++S LFVG L D D+ ++ F+ F + +
Sbjct: 92 PHK-IDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 150
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
+++ D ++G+ RG+ FV F + D + KQ +LNG+ + + A ++ Q G
Sbjct: 151 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQ-HQLNGKMVDVKKALPKQNDQQGGGGG 209
Query: 274 RFNGPASGRGGFR 286
R GP GG R
Sbjct: 210 R-GGPGGRAGGNR 221
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 71.2 bits (173), Expect = 3e-12
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 182 ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVA 241
E F++FVGDL+ DV + L TF +F +A V+ D+Q+ +S+GYGFVSF + A+ A
Sbjct: 25 EHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENA 84
Query: 242 METKQGFELNGRALRINWASKREPQQSQ 269
+ G + RA+R NWA+++ ++++
Sbjct: 85 IAGMNGKWIGKRAVRTNWAARKNSEENR 112
Score = 68.6 bits (166), Expect = 2e-11
Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEYFEPHDANVAYQTL 157
++VG+L K + ++LLK F G +S K+I D +Q+ Y FV + +A A +
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 88
Query: 158 NGKEVEGKVLKINWAFQS------QQVNSDETFN--------LFVGDLNVDVDDATLAGT 203
NGK + + ++ NWA + ++ ++ FN ++VG+++ DA L
Sbjct: 89 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 148
Query: 204 FKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINW 259
F + + + +++ Y FV + +++ A A+ G E+ G +R +W
Sbjct: 149 FSTYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSW 198
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 71.2 bits (173), Expect = 3e-12
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
L V LP+++ D ++ F G + S K+I DK Q Y FV Y + DA A L
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
NG ++ K +K++ A S + S + NL+V L ++ + L F + I + ++
Sbjct: 172 NGLRLQNKTIKVSIARPSSE--SIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILC 229
Query: 218 D-----MQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNG-------RALRINWASK-RE 264
D +G S+G GF+ F ++ +A A++ ELNG + + +A+
Sbjct: 230 DNITDEHAAGLSKGVGFIRFDQRFEADRAIK-----ELNGTTPKNSTEPITVKFANNPSS 284
Query: 265 PQQSQQGQRRFNGPASGRGG 284
+ S Q + P + RGG
Sbjct: 285 NKNSMQPLAAYIAPQNTRGG 304
>7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 168
Score = 71.2 bits (173), Expect = 3e-12
Identities = 44/140 (31%), Positives = 70/140 (49%), Gaps = 3/140 (2%)
Query: 87 ATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYF 145
+ G ++S L V LP+++ + ++ F G + S K++ DK S Q Y FV Y
Sbjct: 16 SVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYV 75
Query: 146 EPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFK 205
DA A TLNG ++ KV+K+++A S + S + NL+V L ++ L G F
Sbjct: 76 RAEDAEKAVNTLNGLRLQNKVIKVSYARPSSE--SIKGANLYVSGLPKNLSQPDLEGMFA 133
Query: 206 EFPSFIQAHVMWDMQSGRSR 225
F I + ++ D SG R
Sbjct: 134 SFGKIITSRILCDNISGTHR 153
>7290796 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 71.2 bits (173), Expect = 3e-12
Identities = 47/149 (31%), Positives = 79/149 (52%), Gaps = 3/149 (2%)
Query: 95 SDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPD-KNSQECNYAFVEYFEPHDANVA 153
S+ L V LP+ + D L F+ G I++ +I+ D K YAFV++ D+ A
Sbjct: 83 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRA 142
Query: 154 YQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
+ LNG V K LK+++A + D NL+V +L + D L F ++ S +Q
Sbjct: 143 IKVLNGITVRNKRLKVSYARPGGESIKDT--NLYVTNLPRTITDDQLDTIFGKYGSIVQK 200
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAM 242
+++ D +GR RG FV + ++++AQ A+
Sbjct: 201 NILRDKLTGRPRGVAFVRYNKREEAQEAI 229
>CE06396 [R] KOG0118 FOG: RRM domain
Length = 392
Score = 70.5 bits (171), Expect = 5e-12
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 6/201 (2%)
Query: 84 PVLATQGGREKSDKILYVGNLPKSIDDDLLKQYF-QIGGSISSVKIIPDKNSQECNYAFV 142
P ++ G + + L++G++P ++ L Q F + G + VK + K+ + Y F+
Sbjct: 78 PAISLSGNN--AQRTLWIGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDELK-GYCFI 134
Query: 143 EYFEPHDANVAYQTLNGKEVEG-KVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLA 201
E+ +A LNG + G K ++ N F + N + FNL V + D+ DA L
Sbjct: 135 EFITFDEARQTLYDLNGNRIPGFKDIRFNLCFANDSYNPNSEFNLHVSSVPDDMADAELY 194
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS 261
F ++ S A M+ G S+G GFV FG Q Q+A+ ++ G + + A
Sbjct: 195 RIFDKYQSCRGAK-MFRFVDGSSKGSGFVRFGNQTDQQMALVEMHRTKVGGCRIILKLAG 253
Query: 262 KREPQQSQQGQRRFNGPASGR 282
R + + R+F + R
Sbjct: 254 SRGERLDRGESRQFKSQRNDR 274
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 70.1 bits (170), Expect = 7e-12
Identities = 53/184 (28%), Positives = 92/184 (49%), Gaps = 10/184 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+++ NL KSID+ L F G+I S K++ D N + YA+V + AN A +N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK-GYAYVHFDSLAAANRAIWHMN 166
Query: 159 GKEVEGKVLKIN-WAFQSQQVNSDET------FNLFVGDLNVDVDDATLAGTFKEFPSFI 211
G + + + + + F ++ T N+FV ++ D+DD L F E+
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTE 226
Query: 212 QAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
V+ D SG+S+G+GFV + + AQ A+ G ++G+ L + A K+ + ++
Sbjct: 227 SVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL- 284
Query: 272 QRRF 275
+RRF
Sbjct: 285 RRRF 288
Score = 68.9 bits (167), Expect = 2e-11
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQE-CNYAFVEYFEPHDANVAYQTL 157
LYVG+L + +D+L + F+ G + +I D ++ Y +V + P DA A T+
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N + GK ++ W+ ++ N+F+ +L+ +D+ L F F + + V+
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
D S+GY +V F A A+ G LN R + +
Sbjct: 140 D--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
Score = 68.6 bits (166), Expect = 2e-11
Identities = 47/181 (25%), Positives = 83/181 (44%), Gaps = 18/181 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
++V N+ IDD+ LK+ F G SVK+I D + + + FV Y A A L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 159 GKEVEGKVLKINWA----------------FQSQQVNSDETFNLFVGDLNVDVDDATLAG 202
GK ++GKVL + A + ++ + +++ +L+ ++D L
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 203 TFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASK 262
F F S +A VM M+ G+ +G+G V F ++A A++ G + + L +
Sbjct: 321 EFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 263 R 263
R
Sbjct: 379 R 379
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 70.1 bits (170), Expect = 7e-12
Identities = 45/183 (24%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIP-DKNSQECNYAFVEYFEPHDAN 151
E+ + ++ L + + L+++F G + V++I +K + A++E+ +P
Sbjct: 233 ERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVA 292
Query: 152 VAYQTLNGKEVEGKVLKI-----------NWAFQSQQVNSDETFNLFVGDLNVDVDDATL 200
+A L+G+ + G + + N A Q + L+VG L+ ++ + L
Sbjct: 293 LALG-LSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDML 351
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
G F+ F ++ D ++GRS+GYGF+++ D A+ A+E GFEL GR +++
Sbjct: 352 RGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNV 411
Query: 261 SKR 263
++R
Sbjct: 412 TER 414
Score = 51.6 bits (122), Expect = 3e-06
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPD-KNSQECNYAFVEYFEPHDANVAYQTL 157
LYVG+L +I +D+L+ F+ G I ++++I D + + Y F+ Y DA A + L
Sbjct: 337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDAT 199
NG E+ G+++K+ N E ++ L+ D D T
Sbjct: 397 NGFELAGRLMKVG--------NVTERLDMNTTSLDTDEMDRT 430
>7296727 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 70.1 bits (170), Expect = 7e-12
Identities = 40/116 (34%), Positives = 65/116 (55%), Gaps = 4/116 (3%)
Query: 153 AYQTLNGKEVEGKVLKIN----WAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFP 208
++QT K+ + K ++I W S D+ F +F GDL DV+D L TF +FP
Sbjct: 163 SFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDLGNDVNDEVLTRTFNKFP 222
Query: 209 SFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
SF +A V+ D ++G+S+G+GFVSF E AM+ G + R +++ ++ R+
Sbjct: 223 SFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGSRPIKLRKSTWRQ 278
>YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 534
Score = 68.9 bits (167), Expect = 2e-11
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 11/199 (5%)
Query: 85 VLATQGGREKSDKI-----LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECN 138
V T+ R K+D +++G L +D L++YF G+++ +KI+ D +
Sbjct: 142 VTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRG 201
Query: 139 YAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDA 198
+ F+ + +P + +T + ++GKV+ A + D+T +FVG + DV
Sbjct: 202 FGFLSFEKPSSVDEVVKTQH--ILDGKVIDPKRAIPRDE--QDKTGKIFVGGIGPDVRPK 257
Query: 199 TLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRIN 258
F ++ + I A +M D +G+SRG+GFV++ D + K + R + I
Sbjct: 258 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNK-FIDFKDRKIEIK 316
Query: 259 WASKREPQQSQQGQRRFNG 277
A R QQ NG
Sbjct: 317 RAEPRHMQQKSSNNGGNNG 335
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 67.8 bits (164), Expect = 3e-11
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS--------------QECNYAFVEY 144
L V LP+++ +D ++ F G I SVK+I DK+ Q Y FV Y
Sbjct: 147 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 206
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
P DA A LNG ++ K +K+++A S ++ + NL+V L + L F
Sbjct: 207 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSS--DAIKGANLYVSGLPKTMTQQELEAIF 264
Query: 205 KEFPSFIQAHVMWDM-QSGRSRGYGFVSFGEQDQAQVAMETKQG 247
F + I + ++ + +++G GF+ F ++++A A+ G
Sbjct: 265 APFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 308
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 67.4 bits (163), Expect = 4e-11
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 176 QQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQ 235
Q + + +FVG ++ D+ L F ++ + A ++ D ++GRSRG+ FV+F
Sbjct: 26 QSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTST 85
Query: 236 DQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPASGRG 283
++A AM+ G +L+GR +R+N+A++R S G R F GP G G
Sbjct: 86 EEASNAMQL-DGQDLHGRRIRVNYATER---GSGFGGRGFGGPGGGYG 129
>Hs7657506 [R] KOG4733 FOG: RRM domain
Length = 411
Score = 67.0 bits (162), Expect = 6e-11
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 22/206 (10%)
Query: 91 GREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEYFEPHD 149
G + S LY+ LP D L + Q G I S K I DKN+ +C Y FV++ P
Sbjct: 46 GEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAA 105
Query: 150 ANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPS 209
A A +L V+ ++ K Q D T NL++ +L + +D+ L K F
Sbjct: 106 AQKAVASLKANGVQAQMAK--------QQEQDPT-NLYISNLPISMDEQELENMLKPFGH 156
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVA--------METKQGFELNGRALRINWAS 261
I ++ D +G SRG GF ++ +V ++T G L +A
Sbjct: 157 VISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 215
Query: 262 KREPQQSQQGQRRFNG---PASGRGG 284
+ ++ Q + NG P G G
Sbjct: 216 GGQKKRQNQSKYTQNGRPWPREGEAG 241
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 67.0 bits (162), Expect = 6e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
L+VG+L+ VDD L F E ++A V++D SGRS+G+GFV+ + Q A+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 246 QGFELNGRALRINWASKREPQ 266
G +L+GR +R++ A R P+
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
Score = 65.9 bits (159), Expect = 1e-10
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LFVG+L+ +VD A LA F+ + V++D +GRSRG+GFV+ + + A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 246 QGFELNGRALRINWA---SKRE------PQQSQQGQRRFNGPASGRGG 284
G+E GR LR+N KRE P+ G R G S RGG
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGG 208
>YBR212w [R] KOG0118 FOG: RRM domain
Length = 672
Score = 66.6 bits (161), Expect = 8e-11
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 29/179 (16%)
Query: 122 SISSVKIIPDKNSQ--ECNYAFVEYFEPHDANVAYQTLNGKEVEG--------------- 164
+I+ + I +Q Y FVE+ DA A +LN +
Sbjct: 111 NINGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFK 169
Query: 165 KVLKINWAFQS---QQVNSDETFNLFVGDLNVDVDDATLAGTFK-EFPSFIQAHVMWDMQ 220
+ ++NWA + + S F+LFVGDL+ +A L F+ F S VM D
Sbjct: 170 RTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPL 229
Query: 221 SGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR-------EPQQSQQGQ 272
+G SR +GFV FG++D+ + A+ G GRALR+ +A+ R + QQ QQ Q
Sbjct: 230 TGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQ 288
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 66.6 bits (161), Expect = 8e-11
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 10/172 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
+YVG++ + +D ++Q F G I S+ + D + +AFVEY P A +A + +
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 158 NGKEVEGKVLKINWAFQ--------SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFP 208
N + G+ +K+ Q FN ++V ++ D+ D + F+ F
Sbjct: 191 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 250
Query: 209 SFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
+ D +G+ +GYGF+ + + +Q A+ + F+L G+ LR+ A
Sbjct: 251 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 66.6 bits (161), Expect = 8e-11
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 10/172 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
+YVG++ + +D ++Q F G I S+ + D + +AFVEY P A +A + +
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 173
Query: 158 NGKEVEGKVLKINWAFQ--------SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFP 208
N + G+ +K+ Q FN ++V ++ D+ D + F+ F
Sbjct: 174 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 233
Query: 209 SFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
+ D +G+ +GYGF+ + + +Q A+ + F+L G+ LR+ A
Sbjct: 234 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285
>At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 747
Score = 66.2 bits (160), Expect = 1e-10
Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 11/192 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
L+VG++P++ ++ ++ YF+ G++ V +I DK + Q+ FV+Y DA+ A + L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 158 NGK-EVEGKV--LKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
+ + + G +++ +A ++ F LFVG LN + + F +F +
Sbjct: 182 HNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVY 241
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQG-FELNG--RALRINWASKREPQQSQQG 271
+M D + +SRG GFV + ++ A A++ G + + G + L + +A EP++ + G
Sbjct: 242 LMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFA---EPKRPKPG 297
Query: 272 QRRFNGPASGRG 283
+ R P G G
Sbjct: 298 ESREMAPPVGLG 309
>Hs5803137 [R] KOG0118 FOG: RRM domain
Length = 157
Score = 65.9 bits (159), Expect = 1e-10
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 180 SDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
S E LFVG LN + D+ L F F + V+ D ++ RSRG+GF++F + A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 240 VAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPASGRG 283
VAM G L+GR +R++ A K S +G R A GRG
Sbjct: 62 VAMRAMNGESLDGRQIRVDHAGK-----SARGTRGGGFGAHGRG 100
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 65.5 bits (158), Expect = 2e-10
Identities = 41/107 (38%), Positives = 61/107 (56%), Gaps = 4/107 (3%)
Query: 180 SDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
SDE LFVG L+ D ++ +L F ++ + V+ D ++ RSRG+GFV+F D A+
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 240 VAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPASGRGGFR 286
AM G ++GR +R++ A K +S +G R G A GRG FR
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRS-RGYR--GGSAGGRGFFR 105
>Hs22042102 [R] KOG0118 FOG: RRM domain
Length = 378
Score = 65.5 bits (158), Expect = 2e-10
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L DD L+++F+ G+++ ++ D ++ + FV Y + + A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA-MCA 95
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
+V+G+V++ A + +FVG + D ++ L F+++
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQ--SQQ 270
VM D QSG+ RG+ FV+F + D + K +NG + A SK+E Q SQ+
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKY-HTINGHNCEVKKALSKQEMQSAGSQR 214
Query: 271 GQRRFNGPASGRGG 284
G+ +G GRGG
Sbjct: 215 GRGGGSGNFMGRGG 228
>CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 749
Score = 65.5 bits (158), Expect = 2e-10
Identities = 44/177 (24%), Positives = 82/177 (45%), Gaps = 18/177 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
+YVG++ I +D+L++ F G I S+ + D +AFVEY P A +A +++
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 158 NGKEVEGKVLKIN-WAFQSQ----------------QVNSDETFNLFVGDLNVDVDDATL 200
NG+ + G+ LK+N FQ Q ++ + F ++V ++ D+ + L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
F+ F ++ + RG+G++ F A+ F+L G+ LR+
Sbjct: 224 KSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 339
Score = 65.5 bits (158), Expect = 2e-10
Identities = 44/177 (24%), Positives = 82/177 (45%), Gaps = 18/177 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
+YVG++ I +D+L++ F G I S+ + D +AFVEY P A +A +++
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 158 NGKEVEGKVLKIN-WAFQSQ----------------QVNSDETFNLFVGDLNVDVDDATL 200
NG+ + G+ LK+N FQ Q ++ + F ++V ++ D+ + L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 201 AGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
F+ F ++ + RG+G++ F A+ F+L G+ LR+
Sbjct: 224 KSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>At2g35410 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 65.5 bits (158), Expect = 2e-10
Identities = 48/186 (25%), Positives = 90/186 (47%), Gaps = 14/186 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
L+V NLP S+ + + + F G++++V+II K+ + +AFV +A A +
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFD 156
Query: 159 GKEVEGKVLKINWAFQSQQ------------VNSDETFNLFVGDLNVDVDDATLAGTFKE 206
+V G+++ +++A + ++ D L+V +L L F
Sbjct: 157 TFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTA 216
Query: 207 FP-SFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP 265
+ + A V++ GRS GYGFVSF +++A+ A+ G E+ GR + + + S R
Sbjct: 217 ADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKF-SLRSA 275
Query: 266 QQSQQG 271
+S+ G
Sbjct: 276 SESEDG 281
>7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 421
Score = 65.5 bits (158), Expect = 2e-10
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 99 LYVGNLPKSIDDDLLKQYF-QIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQ-- 155
L+VG L + L +YF + G I V + +++ + + FV + +P + N Q
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
Query: 156 --TLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
TL+G+ ++ K Q+ + +F+G L +V + L F + +
Sbjct: 69 PHTLDGRTIDPKPCNPRTL---QKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEV 125
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQR 273
+M+D + +SRG+GF+SF E+ + + ++ LNG+ + I K EP+ GQ
Sbjct: 126 VIMYDQEKKKSRGFGFLSFEEESSVE-HVTNERYINLNGKQVEI---KKAEPRDGSGGQN 181
Query: 274 RFNGPASGRGG 284
N G G
Sbjct: 182 SNNSTVGGAYG 192
>Hs4504447 [R] KOG0118 FOG: RRM domain
Length = 341
Score = 65.1 bits (157), Expect = 2e-10
Identities = 49/199 (24%), Positives = 88/199 (43%), Gaps = 14/199 (7%)
Query: 92 REKSD-KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHD 149
REK + L++G L ++ L+ Y++ G ++ ++ D S+ + FV + +
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 150 ANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFK 205
+ A ++G+V++ A ++ LFVG + D ++ L F+
Sbjct: 63 VDAA-MAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 121
Query: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP 265
E+ ++ D QSG+ RG+GFV+F + D + K +NG + A R+
Sbjct: 122 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKY-HTINGHNAEVRKALSRQE 180
Query: 266 QQSQQGQRRFNGPASGRGG 284
Q Q R SGRGG
Sbjct: 181 MQEVQSSR------SGRGG 193
>Hs14043072 [R] KOG0118 FOG: RRM domain
Length = 353
Score = 65.1 bits (157), Expect = 2e-10
Identities = 49/199 (24%), Positives = 88/199 (43%), Gaps = 14/199 (7%)
Query: 92 REKSD-KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHD 149
REK + L++G L ++ L+ Y++ G ++ ++ D S+ + FV + +
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 150 ANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFK 205
+ A ++G+V++ A ++ LFVG + D ++ L F+
Sbjct: 75 VDAA-MAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 133
Query: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP 265
E+ ++ D QSG+ RG+GFV+F + D + K +NG + A R+
Sbjct: 134 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKY-HTINGHNAEVRKALSRQE 192
Query: 266 QQSQQGQRRFNGPASGRGG 284
Q Q R SGRGG
Sbjct: 193 MQEVQSSR------SGRGG 205
>CE18909 [R] KOG4733 FOG: RRM domain
Length = 409
Score = 65.1 bits (157), Expect = 2e-10
Identities = 54/193 (27%), Positives = 89/193 (45%), Gaps = 20/193 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEYFEPHDANVAYQTL 157
LY+ L + +DDLL++ G+I+S K I DK + C Y FV++ P A A L
Sbjct: 109 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGL 168
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N + V+ ++ K+ QQ D T NL++ +L +D + L +F I ++
Sbjct: 169 NTEGVQAQMAKL------QQQEQDPT-NLYIANLPLDFTEQMLETELNKFGMVISTRIL- 220
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREP----QQSQQGQR 273
+SRG GF +++ +V + LNG R + SK P +Q+ G++
Sbjct: 221 RTPDNQSRGVGFARMDSKEKCEVIISA-----LNGG--RFDTMSKEGPALLIKQADTGRK 273
Query: 274 RFNGPASGRGGFR 286
G S F+
Sbjct: 274 SKVGSTSRHPSFQ 286
>At2g14550 [A] KOG0131 Splicing factor 3b subunit 4
Length = 314
Score = 65.1 bits (157), Expect = 2e-10
Identities = 40/136 (29%), Positives = 75/136 (54%), Gaps = 5/136 (3%)
Query: 139 YAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLN-VDVDD 197
+ FV++ DA+ A + N ++ G+ +++ A Q ++ + D NLF+G+L+ V+VD+
Sbjct: 40 FGFVQFHNEEDADYAIKVFNMIKLYGEPIRVKKASQDKK-SLDVGANLFLGNLDPVNVDE 98
Query: 198 ATLAGTFKEFPSFIQAH--VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRAL 255
L TF F I H +M D +G RG+GF+S+ + + A+E G L+ R +
Sbjct: 99 KMLHDTFSAF-GVISDHPKIMRDPDTGNPRGFGFISYDSFEASDAAIEAMTGQYLSNRQI 157
Query: 256 RINWASKREPQQSQQG 271
+ +A K++ + + G
Sbjct: 158 TVTYAYKKDTKGERHG 173
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 64.7 bits (156), Expect = 3e-10
Identities = 38/134 (28%), Positives = 70/134 (51%), Gaps = 3/134 (2%)
Query: 151 NVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSF 210
N+ QT N K++ +V ++ Q + + LF+G + +D+ +L F ++
Sbjct: 9 NILKQTTN-KQLNAQV-SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEV 66
Query: 211 IQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQ 270
+ V+ D ++GRSRG+GFV+F + A A++ G +L+GR +++N+A+ R
Sbjct: 67 VDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDR-TSGGGF 125
Query: 271 GQRRFNGPASGRGG 284
G + G G GG
Sbjct: 126 GGGGYGGGGGGYGG 139
Score = 49.7 bits (117), Expect = 1e-05
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 89 QGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEP 147
Q R S L++G + S+D+D L++ F G + ++I D+ + + + FV +
Sbjct: 32 QAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSS 91
Query: 148 HDANVAYQTLNGKEVEGKVLKINWA 172
A+ A Q L+G+++ G+V+K+N+A
Sbjct: 92 EAASSAIQALDGRDLHGRVVKVNYA 116
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 64.7 bits (156), Expect = 3e-10
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Query: 180 SDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
S+ + FVG L +D L TF +F I + ++ D +SGRSRG+GFV+F ++ +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 240 VAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNG--PASGRGGFRXXXXXXXXXXX 297
A+E G EL+GR + +N A R G+ G + G GG+
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121
Query: 298 XXGINRHAG 306
G R +G
Sbjct: 122 GGGYERRSG 130
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 64.7 bits (156), Expect = 3e-10
Identities = 46/166 (27%), Positives = 77/166 (45%), Gaps = 2/166 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
++V NL +SID+ L F G + S K+ D + Y FV+++ A N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 159 GKEVEGKVLKINWAFQSQQVNSDETF-NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
G + + + + Q + F N++V +L DA L F EF A VM
Sbjct: 93 GTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMK 152
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR 263
D + G+SR +GFV+F + + A A+E G ++ + L + A ++
Sbjct: 153 DGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK 197
Score = 59.3 bits (142), Expect = 1e-08
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+YV NL ++ D LK+ F G I+S ++ D + + FV + + A A + +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 159 GKEVEGKVLKINWA-------------FQSQQVNSD----ETFNLFVGDLNVDVDDATLA 201
G V+ K L + A F+ +++ D + NL+V +L+ VD+ L
Sbjct: 181 GVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLE 240
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS 261
F EF + ++G GFV F ++A AM G + + + ++ A
Sbjct: 241 ELFSEFGTITSC----------NKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 290
Query: 262 KREPQQSQQGQRRFNGP 278
+E Q Q +FN P
Sbjct: 291 CKE-QHKLHLQTQFNNP 306
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 64.3 bits (155), Expect = 4e-10
Identities = 29/72 (40%), Positives = 50/72 (69%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LF+GDL+ V + TL G FK++PSF+ A V D + +S G+G+++F ++++A+ AME
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 246 QGFELNGRALRI 257
++NG+ +RI
Sbjct: 153 NYTKVNGKEIRI 164
>SPAC31G5.01 [A] KOG0131 Splicing factor 3b subunit 4
Length = 139
Score = 64.3 bits (155), Expect = 4e-10
Identities = 40/130 (30%), Positives = 67/130 (50%), Gaps = 1/130 (0%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAY 154
D +Y+GNL + + D +L + G + ++ I D+ N + F E+ D A
Sbjct: 10 DATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYAC 69
Query: 155 QTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
Q LN ++ GK +++N A Q + VN+ NLFVG+L+ VD+ L TF ++A
Sbjct: 70 QILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAP 129
Query: 215 VMWDMQSGRS 224
+ ++GRS
Sbjct: 130 QVARDENGRS 139
>Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 268
Score = 63.9 bits (154), Expect = 5e-10
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 11/195 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ L+ +F+ G+++ ++ D N++ + FV Y + + A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 158 NGKEVEGKVLKINWAFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K V+G+V++ A SQ+ ++ T +FVG + D ++ L F+++
Sbjct: 76 PHK-VDGRVVEPKRAVSREDSQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQSQQGQ 272
+M D SG+ RG+ FV+F + D + K +NG + A SK+E + Q
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 273 RRFNGPAS---GRGG 284
R +G + GRGG
Sbjct: 194 RGRSGSGNFGGGRGG 208
>Hs13650572 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 63.9 bits (154), Expect = 5e-10
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ L+ +F+ G+++ ++ D N++ + FV Y + + A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 158 NGKEVEGKVLKINWAFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K V+G+V++ A SQ+ + T +FVG + D ++ L F+++
Sbjct: 76 PHK-VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQSQQGQ 272
+M D SG+ RG+ FV+F + D + K +NG + A SK+E + Q
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKY-HTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 273 RRFNGPAS---GRGG 284
R +G + GRGG
Sbjct: 194 RGRSGSGNFGGGRGG 208
>CE18908 [R] KOG4733 FOG: RRM domain
Length = 357
Score = 63.9 bits (154), Expect = 5e-10
Identities = 43/150 (28%), Positives = 72/150 (47%), Gaps = 9/150 (6%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEYFEPHDANVAYQTL 157
LY+ L + +DDLL++ G+I+S K I DK + C Y FV++ P A A L
Sbjct: 83 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGL 142
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
N + V+ ++ K+ QQ D T NL++ +L +D + L +F I ++
Sbjct: 143 NTEGVQAQMAKL------QQQEQDPT-NLYIANLPLDFTEQMLETELNKFGMVISTRIL- 194
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQG 247
+SRG GF +++ +V + G
Sbjct: 195 RTPDNQSRGVGFARMDSKEKCEVIISALNG 224
>Hs4504445 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 63.5 bits (153), Expect = 6e-10
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ L+ +F+ G+++ ++ D N++ + FV Y + + A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 158 NGKEVEGKVLKINWAFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K V+G+V++ A SQ+ + T +FVG + D ++ L F+++
Sbjct: 76 PHK-VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQSQQGQ 272
+M D SG+ RG+ FV+F + D + K +NG + A SK+E + Q
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 273 RRFNGPAS---GRGG 284
R +G + GRGG
Sbjct: 194 RGRSGSGNFGGGRGG 208
>Hs14043070 [R] KOG0118 FOG: RRM domain
Length = 372
Score = 63.5 bits (153), Expect = 6e-10
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ L+ +F+ G+++ ++ D N++ + FV Y + + A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 158 NGKEVEGKVLKINWAFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K V+G+V++ A SQ+ + T +FVG + D ++ L F+++
Sbjct: 76 PHK-VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQSQQGQ 272
+M D SG+ RG+ FV+F + D + K +NG + A SK+E + Q
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 273 RRFNGPAS---GRGG 284
R +G + GRGG
Sbjct: 194 RGRSGSGNFGGGRGG 208
>7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 637
Score = 63.5 bits (153), Expect = 6e-10
Identities = 42/169 (24%), Positives = 84/169 (48%), Gaps = 10/169 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
+YVG++ + +D ++ F G I S+ + D +Q+ +AFVEY P A +A + +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 158 NGKEVEGKVLKINWAF---QSQQVNSD-----ETFN-LFVGDLNVDVDDATLAGTFKEFP 208
NG + G+ +K+ Q+QQV + ++FN ++V ++ D+ + + F+ F
Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFG 251
Query: 209 SFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
+ + +GYGF+ + + A+ + F+L G+ LR+
Sbjct: 252 PILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>Hs5803036 [R] KOG0118 FOG: RRM domain
Length = 305
Score = 63.2 bits (152), Expect = 8e-10
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKII--PDKNSQECNYAFVEYFEPHDANVAYQT 156
L++G L + L+ +F+ G+++ ++ P C + FV Y +A+ A
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRC-FGFVTYSNVEEADAA-MA 66
Query: 157 LNGKEVEGKVLKINWAFQSQQVNSD----ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQ 212
+ V+G +++ A + + LFVG L DV + L F +F + +
Sbjct: 67 ASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEK 126
Query: 213 AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQGQ 272
A ++ D QSG+ RG+GFV F D A A K + G + + A +E S G
Sbjct: 127 AEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK-FHPIQGHRVEVKKAVPKEDIYSGGGG 185
Query: 273 RRFNGPASGRGG 284
GRGG
Sbjct: 186 GGSRSSRGGRGG 197
>Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 63.2 bits (152), Expect = 8e-10
Identities = 50/195 (25%), Positives = 92/195 (46%), Gaps = 11/195 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ-ECNYAFVEYFEPHDANVAYQTL 157
L++G L D+ L+ +F+ G+++ ++ D N++ + FV Y + A
Sbjct: 16 LFIGGLSFETTDESLRSHFEQRGTLTDCVVMRDPNTKCSTGFGFVTYATVKEVEAAMNA- 74
Query: 158 NGKEVEGKVLKINWAFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQA 213
++V+G+V++ A SQ+ + T +FVG + D ++ L F+++
Sbjct: 75 RPQKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQSQQGQ 272
+M D SG+ RG+ FV+F + D + K +NG + A SK+E + Q
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCEVRKALSKQEMTSASSSQ 193
Query: 273 RRFNGPAS---GRGG 284
R +G + GRGG
Sbjct: 194 RGRSGSGNFGGGRGG 208
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 62.8 bits (151), Expect = 1e-09
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LF+G L+ VD+ +L F F + + +D SGRSRG+GFV F E+ A A +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 246 QGFELNGRALRINWASKR 263
G L GR LRI++A +R
Sbjct: 103 DGKGLLGRPLRISFALER 120
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/92 (32%), Positives = 49/92 (52%), Gaps = 2/92 (2%)
Query: 84 PVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFV 142
P T S K L++G L S+D+ LK F G ++ V+I DK S + + FV
Sbjct: 29 PQFCTSSSASPSSK-LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
Query: 143 EYFEPHDANVAYQTLNGKEVEGKVLKINWAFQ 174
++ E DA A ++GK + G+ L+I++A +
Sbjct: 88 DFAEEGDALSAKDAMDGKGLLGRPLRISFALE 119
>7295704 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 62.8 bits (151), Expect = 1e-09
Identities = 46/144 (31%), Positives = 77/144 (52%), Gaps = 8/144 (5%)
Query: 112 LLKQYFQIGGSISSVKIIPDKNSQE-CNYAFVEYFEPHDANVAYQTLNGKEVEGKV---- 166
++ + ++G ++V+++ +K + E Y FV + A A LNGK + G
Sbjct: 6 IIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPGTNPIVR 65
Query: 167 LKINWAFQSQQVNSDET-FNLFVGDLNVDVDDATLAGTFK-EFPSFIQAHVMWDMQSGRS 224
++N A S ++ +E F+++VGDL+ DVDD L F +F S A V+ D G S
Sbjct: 66 FRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILD-SLGFS 124
Query: 225 RGYGFVSFGEQDQAQVAMETKQGF 248
+GYGFV FG +D+ + A+ G+
Sbjct: 125 KGYGFVRFGIEDEQKSALYDMNGY 148
>HsM13236563 [R] KOG0226 RNA-binding proteins
Length = 451
Score = 61.6 bits (148), Expect = 2e-09
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 182 ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVA 241
+ F +F GDL +V+D LA F FPSF++A V+ D ++G+++GYGFVSF + A
Sbjct: 350 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 409
Query: 242 METKQGFELNGRALRI 257
M G + R +++
Sbjct: 410 MREMNGKYVGSRPIKL 425
>Hs4506449 [R] KOG4733 FOG: RRM domain
Length = 407
Score = 61.6 bits (148), Expect = 2e-09
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 88 TQGGREKSDKILYVGNL-PKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEYF 145
+ G + S LY+ L P + D DL+K Q G I S K I DK + +C Y FV++
Sbjct: 47 SNGNDQLSKTNLYIRGLQPGTTDQDLVK-LCQPYGKIVSTKAILDKTTNKCKGYGFVDFD 105
Query: 146 EPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFK 205
P A A L V+ ++ K Q D T NL++ +L + +D+ L G K
Sbjct: 106 SPSAAQKAVTALKASGVQAQMAK--------QQEQDPT-NLYISNLPLSMDEQELEGMLK 156
Query: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVA--------METKQGFELNGRALRI 257
F I ++ D SG SRG GF ++ + ++T G L
Sbjct: 157 PFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLC 215
Query: 258 NWASKREPQQSQQGQRRFNGPA 279
+A ++ QG+ NG A
Sbjct: 216 KFADGGPKKRQNQGKFVQNGRA 237
>Hs21359951 [R] KOG0226 RNA-binding proteins
Length = 480
Score = 61.6 bits (148), Expect = 2e-09
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 182 ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVA 241
+ F +F GDL +V+D LA F FPSF++A V+ D ++G+++GYGFVSF + A
Sbjct: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 242 METKQGFELNGRALRI 257
M G + R +++
Sbjct: 439 MREMNGKYVGSRPIKL 454
>Hs13654587 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ L+ +F+ G+++ ++ D N++ + FV Y + + A T
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 158 NGKEVEGKVLKINWAFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K V+G+V++ A SQ+ + T +FVG + D ++ L F+++
Sbjct: 76 PHK-VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK------QGFELNGRALRINWASKREPQQ 267
+M D SG+ RG+ FV+F + D + K E+ + AS Q+
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
Query: 268 SQQGQRRFNGPASGRG 283
++G F G GRG
Sbjct: 195 GRRGSGNFGG---GRG 207
>7300034 [R] KOG0118 FOG: RRM domain
Length = 251
Score = 61.6 bits (148), Expect = 2e-09
Identities = 44/173 (25%), Positives = 80/173 (45%), Gaps = 5/173 (2%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ-ECNYAFVEYFEPHDANVAYQTL 157
L + LP+ + + L + F G I KII + + C Y FV+Y A A +
Sbjct: 43 LILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGM 102
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
+G E GK LK+ +A S+ ++ +L+VG+L +D+ + F + + + +++
Sbjct: 103 DGYETRGKRLKVAFARPSEYESTSS--SLYVGNLPTYMDEKKVRELFATYGNIVDVNLLR 160
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNG--RALRINWASKREPQQS 268
+ RSRG F+ F A+VA + + G R L + + + + S
Sbjct: 161 HKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKFVEREKKGSS 213
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 61.2 bits (147), Expect = 3e-09
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 178 VNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQ 237
++ D + F+G L D L F+++ ++A V+ D SGRSRG+GF++F E+
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 238 AQVAMETKQGFELNGRALRINWASKREPQQSQQGQ-------------RRFNGPASGRGG 284
A+ G +L+GR + ++ K +P Q G+ R + P+ GRGG
Sbjct: 61 MDEAIAAMNGMDLDGRTITVD---KAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG 117
>SPAC22E12.02 [R] KOG0226 RNA-binding proteins
Length = 219
Score = 60.8 bits (146), Expect = 4e-09
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 184 FNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAME 243
F LFVG+L DV+D +L F E+PS ++ V+ D + G++RG+GFVSF + DQ A
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKAWR 88
Query: 244 TKQGFELNGRALRINWAS 261
K G + R ++++ A+
Sbjct: 89 EKNGKYIGSRPVKLSRAT 106
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 60.8 bits (146), Expect = 4e-09
Identities = 28/90 (31%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 173 FQSQQVNSDETF-NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVS 231
++S V +D + ++FVG+++ DV + T+ F + + + ++ D ++G+ +GYGF+
Sbjct: 6 YKSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIE 65
Query: 232 FGEQDQAQVAMETKQGFELNGRALRINWAS 261
F + A+VA+ G+EL+GR LR++ A+
Sbjct: 66 FPDIQTAEVAIRNLNGYELSGRILRVDSAA 95
Score = 57.4 bits (137), Expect = 5e-08
Identities = 24/83 (28%), Positives = 52/83 (61%), Gaps = 1/83 (1%)
Query: 91 GREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHD 149
G ++S + ++VGN+ + +D ++ F G++ S+K++ D+ + + Y F+E+ +
Sbjct: 12 GNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQT 71
Query: 150 ANVAYQTLNGKEVEGKVLKINWA 172
A VA + LNG E+ G++L+++ A
Sbjct: 72 AEVAIRNLNGYELSGRILRVDSA 94
>7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 611
Score = 60.8 bits (146), Expect = 4e-09
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 64 NNXXXXXXXXXXXXXXXSAAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQI---- 119
NN + P L+ G + + L+VG L D LK+YF I
Sbjct: 142 NNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNIEESR 201
Query: 120 ----GGSISSVKIIPDKNSQECNYAFVEYFEPHDAN----VAYQTLNGKEVEGKVLKINW 171
GS S + IP S+ + F+ + EP V TL+GK+++ K +
Sbjct: 202 VKDKAGSRSRKQRIPGLRSR--GFGFITFQEPCTVEKVLKVPIHTLDGKKIDPK----HA 255
Query: 172 AFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVS 231
+++ +++T +FVG ++ D + F +F + ++ D Q+ R RG+GFV+
Sbjct: 256 TPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVT 315
Query: 232 FGEQD 236
F +D
Sbjct: 316 FENED 320
>At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 453
Score = 60.5 bits (145), Expect = 5e-09
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
NLF+ ++ + +D LA TF+ F + A V D +G S+ +GF+S+ Q AQ A+ T
Sbjct: 355 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 414
Query: 245 KQGFELNGRALRINWASKREPQQSQQGQRR--FNG 277
G +L+G+ L++ QQ QQ + FNG
Sbjct: 415 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNG 449
>At4g14300 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 406
Score = 60.1 bits (144), Expect = 7e-09
Identities = 45/199 (22%), Positives = 84/199 (41%), Gaps = 13/199 (6%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK----------NSQECNYAFVEYFEPH 148
L+VG + D+D L+++F G +S ++ DK C Y + Y
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGIRKNRCIYFLLRYVLDL 67
Query: 149 DANVAYQTLNGKE--VEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKE 206
+ ++ +E V G+ +N + S ++T +FVG L + D F+
Sbjct: 68 GKVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 127
Query: 207 FPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQ 266
+ +M+D + R RG+GFVSF +D + K +L+G+ + + A ++
Sbjct: 128 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH-KTFHDLSGKQVEVKRALPKDAN 186
Query: 267 QSQQGQRRFNGPASGRGGF 285
G+ G + G G+
Sbjct: 187 PGGGGRSMGGGGSGGYQGY 205
>At4g09040 [R] KOG0118 FOG: RRM domain
Length = 225
Score = 60.1 bits (144), Expect = 7e-09
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 141 FVEYFEPHDANVAYQTLNGKEVEGKVLKINWA-------FQSQQVNSD-ETFNLFVGDLN 192
F+E P +A+ A+ +L E EG+ LK+++A + ++ S TFNLFV +L
Sbjct: 59 FIEMASPEEASTAFISLESYEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLA 118
Query: 193 VDVDDATLAGTFK-EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELN 251
+ L F + + + V++ RS GYGFVSF + QA+ A+ QG +
Sbjct: 119 FEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFL 178
Query: 252 GRALRINWASKREPQQSQQG 271
GR +R+ + + Q+++G
Sbjct: 179 GRPIRLAKSKQFVKLQAKEG 198
>At3g04500 [R] KOG0226 RNA-binding proteins
Length = 245
Score = 60.1 bits (144), Expect = 7e-09
Identities = 29/94 (30%), Positives = 52/94 (54%)
Query: 181 DETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQV 240
+ + LF GDL +V+D L+ F FP+F A V+ D ++G+++GYGFVSF
Sbjct: 134 ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAA 193
Query: 241 AMETKQGFELNGRALRINWASKREPQQSQQGQRR 274
A++ G + R +++ +S +E + +R+
Sbjct: 194 ALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQ 227
>SPAC328.05 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 59.7 bits (143), Expect = 9e-09
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 26/210 (12%)
Query: 81 SAAPVLATQGGREKSDKILYVGN---------------LPKSIDDDLLKQYFQIGGSISS 125
S +P ++ G + D+ L+VGN LP ++ LK F+ GS+
Sbjct: 152 SVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIR 211
Query: 126 VKIIPDKNSQECNYAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFN 185
I ++ + V +A A Q L+ + G+ L++ + D ++
Sbjct: 212 ADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYH 271
Query: 186 ----------LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQ 235
++VG+L D L F + S I+A + ++ +GRS+G+G V F +
Sbjct: 272 AYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENE 330
Query: 236 DQAQVAMETKQGFELNGRALRINWASKREP 265
+ A ++E G+ GR L++++A P
Sbjct: 331 NDAASSIEKLNGYRYGGRPLQLSYAHYATP 360
Score = 50.8 bits (120), Expect = 4e-06
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 94 KSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVA 153
+ ++ +YVGNL + LK++ G++ + +I+ N A +EY +A A
Sbjct: 63 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTA 122
Query: 154 YQTLNGKEVEGKVLKI------NWAFQSQQVNSDETFN---------LFVGD-------- 190
+TL+ ++ G+++ I N F S V+ + N LFVG+
Sbjct: 123 IKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPL 182
Query: 191 -------LNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAME 243
L +V L F++ S I+A + + Q GRSRG G V +A A++
Sbjct: 183 YSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMN-QEGRSRGIGIVVMSSMKEAMHAIQ 241
Query: 244 TKQGFELNGRALRI 257
+ GR L +
Sbjct: 242 MLHNTDFMGRTLEV 255
>At2g21660 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 59.7 bits (143), Expect = 9e-09
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 179 NSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQA 238
+ D + FVG L DD L F ++ I + ++ D ++GRSRG+GFV+F ++
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 239 QVAMETKQGFELNGRALRINWASKR 263
+ A+E G +L+GR++ +N A R
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEAQSR 87
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 59.3 bits (142), Expect = 1e-08
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 94 KSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANV 152
+ D +++G L DD L+ YF+ G + ++ D + + + F+ + P N
Sbjct: 160 REDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNE 219
Query: 153 AYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQ 212
+ ++GK++ A ++ ++T +FVG + D + F +F +
Sbjct: 220 VMSKEH--HLDGKIIDPKRAIPREE--QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLD 275
Query: 213 AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR 263
A +M D +GR RG+GFV++ E + A A ++ ++G+ + + A+ +
Sbjct: 276 ATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 50.1 bits (118), Expect = 7e-06
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 172 AFQSQQVNSDET--FN-----LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRS 224
A +S + N++ET FN +F+G LN + D +L F++F + VM D +GRS
Sbjct: 144 AMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRS 203
Query: 225 RGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQ 267
RG+GF++F M + L+G+ + A RE Q+
Sbjct: 204 RGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAIPREEQE 244
>CE24459 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 59.3 bits (142), Expect = 1e-08
Identities = 30/94 (31%), Positives = 52/94 (54%)
Query: 171 WAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFV 230
W S + F +F GDL +V D LA F+++PSF +A V+ + ++ +S+GYGFV
Sbjct: 190 WEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFV 249
Query: 231 SFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
SF + + AM G + R +++ ++ +E
Sbjct: 250 SFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKE 283
>At5g51300 [A] KOG0119 Splicing factor 1/branch point binding protein (RRM
superfamily)
Length = 804
Score = 59.3 bits (142), Expect = 1e-08
Identities = 33/101 (32%), Positives = 48/101 (46%), Gaps = 1/101 (0%)
Query: 181 DETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQV 240
DET NL++G L ++D L F F + A V+ D +G S+GYGFV + + A
Sbjct: 478 DET-NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 241 AMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPASG 281
A++ G+ GR L + A K P + G P G
Sbjct: 537 AVQAMNGYRFEGRTLAVRIAGKSPPPIAPPGPPAPQPPTQG 577
Score = 51.6 bits (122), Expect = 3e-06
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 92 REKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDA 150
+E + LY+G LP ++DD L F G I K+I D+ Y FV+Y + A
Sbjct: 475 KEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMA 534
Query: 151 NVAYQTLNGKEVEGKVLKINWAFQS 175
N A Q +NG EG+ L + A +S
Sbjct: 535 NTAVQAMNGYRFEGRTLAVRIAGKS 559
>At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 59.3 bits (142), Expect = 1e-08
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 16/180 (8%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN---VAY 154
L++G + +D L+ YF G + I+ D+ + + FV + +P+ A +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 155 QTLNGKEVEGKVL----------KINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
++GK VE K K N + Q S+ +FVG L V +A F
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSK-KIFVGGLASSVTEAEFKKYF 126
Query: 205 KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
+F VM+D ++ R RG+GF+S+ ++ ++ K ELNG+ + + A ++
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ-KTFHELNGKMVEVKLAVPKD 185
>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
Length = 244
Score = 59.3 bits (142), Expect = 1e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
L++G L+ D+ +L F F +A VM + +GRSRGYGFV+F +D A A+
Sbjct: 65 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 124
Query: 246 QGFELNGRALRINWA 260
G ELNG + +N A
Sbjct: 125 NGQELNGFNISVNVA 139
>Hs8400724 [R] KOG4733 FOG: RRM domain
Length = 389
Score = 58.9 bits (141), Expect = 2e-08
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 87 ATQGGREKSDKILYVGNLPK-SIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEY 144
+ G + S LY+ LP + D DL+K Q G I S K I DK + +C Y FV++
Sbjct: 19 SNSGWDQLSKTNLYIRGLPPHTTDQDLVK-LCQPYGKIVSTKAILDKTTNKCKGYGFVDF 77
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
P A A L V+ ++ K Q D T NL++ +L + +D+ L
Sbjct: 78 DSPAAAQKAVSALKASGVQAQMAK--------QQEQDPT-NLYISNLPLSMDEQELENML 128
Query: 205 KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAM 242
K F I ++ D SG SRG GF ++ + +
Sbjct: 129 KPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVI 165
>Hs8400722 [R] KOG4733 FOG: RRM domain
Length = 373
Score = 58.9 bits (141), Expect = 2e-08
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 87 ATQGGREKSDKILYVGNLPK-SIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEY 144
+ G + S LY+ LP + D DL+K Q G I S K I DK + +C Y FV++
Sbjct: 19 SNSGWDQLSKTNLYIRGLPPHTTDQDLVK-LCQPYGKIVSTKAILDKTTNKCKGYGFVDF 77
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
P A A L V+ ++ K Q D T NL++ +L + +D+ L
Sbjct: 78 DSPAAAQKAVSALKASGVQAQMAK--------QQEQDPT-NLYISNLPLSMDEQELENML 128
Query: 205 KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAM 242
K F I ++ D SG SRG GF ++ + +
Sbjct: 129 KPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVI 165
>Hs8400720 [R] KOG4733 FOG: RRM domain
Length = 419
Score = 58.9 bits (141), Expect = 2e-08
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 87 ATQGGREKSDKILYVGNLPK-SIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEY 144
+ G + S LY+ LP + D DL+K Q G I S K I DK + +C Y FV++
Sbjct: 52 SNSGWDQLSKTNLYIRGLPPHTTDQDLVK-LCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
P A A L V+ ++ K Q D T NL++ +L + +D+ L
Sbjct: 111 DSPAAAQKAVSALKASGVQAQMAK--------QQEQDPT-NLYISNLPLSMDEQELENML 161
Query: 205 KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAM 242
K F I ++ D SG SRG GF ++ + +
Sbjct: 162 KPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVI 198
>Hs8400718 [R] KOG4733 FOG: RRM domain
Length = 406
Score = 58.9 bits (141), Expect = 2e-08
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 87 ATQGGREKSDKILYVGNLPK-SIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEY 144
+ G + S LY+ LP + D DL+K Q G I S K I DK + +C Y FV++
Sbjct: 52 SNSGWDQLSKTNLYIRGLPPHTTDQDLVK-LCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
P A A L V+ ++ K Q D T NL++ +L + +D+ L
Sbjct: 111 DSPAAAQKAVSALKASGVQAQMAK--------QQEQDPT-NLYISNLPLSMDEQELENML 161
Query: 205 KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAM 242
K F I ++ D SG SRG GF ++ + +
Sbjct: 162 KPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVI 198
>Hs4506447 [R] KOG4733 FOG: RRM domain
Length = 403
Score = 58.9 bits (141), Expect = 2e-08
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 87 ATQGGREKSDKILYVGNLPK-SIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEY 144
+ G + S LY+ LP + D DL+K Q G I S K I DK + +C Y FV++
Sbjct: 52 SNSGWDQLSKTNLYIRGLPPHTTDQDLVK-LCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
Query: 145 FEPHDANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTF 204
P A A L V+ ++ K Q D T NL++ +L + +D+ L
Sbjct: 111 DSPAAAQKAVSALKASGVQAQMAK--------QQEQDPT-NLYISNLPLSMDEQELENML 161
Query: 205 KEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAM 242
K F I ++ D SG SRG GF ++ + +
Sbjct: 162 KPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVI 198
>At3g52150 [R] KOG0118 FOG: RRM domain
Length = 546
Score = 58.9 bits (141), Expect = 2e-08
Identities = 44/180 (24%), Positives = 81/180 (44%), Gaps = 23/180 (12%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
+Y+GN+P+++ ++ L + + G++ K++ DK S + + F DAN + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVE--KVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 135
Query: 158 NGKE-------VEGKVLKINWA------------FQSQQ-VNSDETFNLFVGDLNVDVDD 197
NG VEG+ +K+N QS+ D + ++VG+L V
Sbjct: 136 NGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTK 195
Query: 198 ATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
L F E + A V + +S G+GFV+F ++ + A+ L G+ +R+
Sbjct: 196 EMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRL 255
>At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 492
Score = 58.9 bits (141), Expect = 2e-08
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAY--- 154
L++G + +++ LK+YF G + I+ D+ + + FV + +P A +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 155 QTLNGKEVEGK----------VLKINWA-FQSQQVNSDETFNLFVGDLNVDVDDATLAGT 203
++G+ VE K V + N + Q T +FVG L V ++
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 204 FKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR 263
F++F + VM+D + R RG+GF+++ ++ + + K ELNG+ + + A +
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL-LKTFHELNGKMVEVKRAVPK 186
Query: 264 E 264
E
Sbjct: 187 E 187
>CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 305
Score = 58.5 bits (140), Expect = 2e-08
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAY 154
DK ++VG + ++++ L +F G ++ ++ D+ N + +AFVE+ +A
Sbjct: 28 DKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLAL 87
Query: 155 ----QTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSF 210
QT+ GK VE K K S E +FVG L D + L F++F
Sbjct: 88 AAREQTIKGKSVEVKPAK-----------SRENKKVFVGGLPSDYSEQDLRSHFEQFGKV 136
Query: 211 IQAHVMWDMQSGRSRGYGFVSFGEQDQA-QVAMETKQGF 248
+D Q+ R + F+ F E++ A + + +TKQ F
Sbjct: 137 DDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTF 175
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 58.5 bits (140), Expect = 2e-08
Identities = 27/79 (34%), Positives = 42/79 (52%)
Query: 184 FNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAME 243
F+++VG+ + L F ++ D ++GR RG+ F+ F E+ AQ A+E
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 244 TKQGFELNGRALRINWASK 262
G E NGR LR+N A+K
Sbjct: 65 QMNGAEFNGRPLRVNLANK 83
>At1g58470 [R] KOG0118 FOG: RRM domain
Length = 360
Score = 58.5 bits (140), Expect = 2e-08
Identities = 49/200 (24%), Positives = 84/200 (41%), Gaps = 28/200 (14%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQTL 157
L+VG + K ++ LKQYF G++ + +K + + FV + D A +
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 158 N---GKEV---------------------EGKVLKINWAFQSQQVN--SDETFNLFVGDL 191
+ GK V E KV ++N + N + T +FVG L
Sbjct: 68 HFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGL 127
Query: 192 NVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELN 251
+ + + F+ F VM D + R RG+GFV++ +D +V M++ EL+
Sbjct: 128 SSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS-NFHELS 186
Query: 252 GRALRINWASKREPQQSQQG 271
+ + + A +E QS G
Sbjct: 187 DKRVEVKRAIPKEGIQSNNG 206
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 58.5 bits (140), Expect = 2e-08
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 174 QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFG 233
Q Q + ++FVG++ + + L F E + +++D +SG+ +G+GF +
Sbjct: 6 QEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
Query: 234 EQDQAQVAMETKQGFELNGRALRINWA----SKREPQQSQQG 271
+Q+ A AM G+E+ GR LR++ A S+ E QQ QG
Sbjct: 66 DQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQG 107
Score = 49.7 bits (117), Expect = 1e-05
Identities = 25/79 (31%), Positives = 47/79 (58%), Gaps = 1/79 (1%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDAN 151
+KS + ++VGN+P ++ LK+ F G + S+K++ D+ S + + F EY + A
Sbjct: 12 DKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETAL 71
Query: 152 VAYQTLNGKEVEGKVLKIN 170
A + LNG E+ G+ L+++
Sbjct: 72 SAMRNLNGYEIGGRTLRVD 90
>At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 304
Score = 57.8 bits (138), Expect = 4e-08
Identities = 39/120 (32%), Positives = 58/120 (47%), Gaps = 10/120 (8%)
Query: 173 FQSQQVNSDET----FNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYG 228
FQ + N++ T +FVG L + T+ F++F ++A V+ D +GRS+GYG
Sbjct: 7 FQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG 66
Query: 229 FVSFGEQDQAQVAMETKQGFELNGRALRINWA-----SKREPQQSQQGQRRFNGPASGRG 283
FV+F E + A A + ++GR N A R P + G RF P SG G
Sbjct: 67 FVTFKEAEAAMRACQNMNPV-IDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVG 125
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 57.8 bits (138), Expect = 4e-08
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 7/184 (3%)
Query: 90 GGREKSDK-ILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPH 148
GG D +Y+ NL +SID+ + F + G+I + + D++ Y FV +
Sbjct: 105 GGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEE 164
Query: 149 DANVAYQTLNGKEVEGK---VLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFK 205
A A + +NG + V+K +Q + NL+V +L+ + + L F+
Sbjct: 165 AARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFE 224
Query: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFEL-NGRALRINWA-SKR 263
+ +M D + GRSR +GFV++ A A+ G +L + + L + A SK
Sbjct: 225 PYGRITSHKLMLD-EEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKA 283
Query: 264 EPQQ 267
E QQ
Sbjct: 284 ERQQ 287
>Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 407
Score = 57.4 bits (137), Expect = 5e-08
Identities = 50/212 (23%), Positives = 92/212 (42%), Gaps = 29/212 (13%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAY--- 154
L+VG L S + L+ YF G + I+ DK + Q + FV++ +P+
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 155 -QTLNGKEVEGKVL------------KINWAFQSQQVNSDETFNLFVGDLNVDVDDATLA 201
TL+G+ ++ K K W + + + ++ +FVG + + + L
Sbjct: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQ-KGPRSDYSKSNKIFVGGIPHNCGETELR 130
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGF-ELNGRALRINWA 260
FK+F + +++D + R RG+GF++F +D+ V F ++ G+ + + A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITF--EDEQSVDQAVNMHFHDIMGKKVEVKRA 188
Query: 261 SKR--------EPQQSQQGQRRFNGPASGRGG 284
R +P SQ G R A+G G
Sbjct: 189 EPRDSKSQAPGQPGASQWGSRVVPNAANGWAG 220
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 57.4 bits (137), Expect = 5e-08
Identities = 29/93 (31%), Positives = 50/93 (53%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LF+G L+ + L+ F + ++A ++ D S RS+G+GFV+F D+AQ A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 246 QGFELNGRALRINWASKREPQQSQQGQRRFNGP 278
G +LNGR + +++A ++ G GP
Sbjct: 96 NGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGP 128
>7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 1112
Score = 57.4 bits (137), Expect = 5e-08
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 172 AFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVS 231
A +Q+ E NLF+ L + D LA TF F + I A V D Q+ S+ +GFVS
Sbjct: 731 AAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVS 790
Query: 232 FGEQDQAQVAMETKQGFEL 250
F D AQVA++ GF++
Sbjct: 791 FDNPDSAQVAIKAMNGFQM 809
Score = 54.7 bits (130), Expect = 3e-07
Identities = 43/149 (28%), Positives = 78/149 (51%), Gaps = 8/149 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKN---SQECNYAFVEYFEPHDANVAYQ 155
++VG +PKS+D+ L++ F+ G++ S+ ++ DK S+ C FV ++ H A A
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGC--CFVTFYTRHAALKAQD 416
Query: 156 TL-NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
L N K + G + + N +E LFVG LN +++ + F+ + +
Sbjct: 417 ALHNVKTLNGVMYHPIQMKPADSENRNER-KLFVGMLNKKLNENDVRKLFEVHGAIEECT 475
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAME 243
V+ D Q+G+S+G FV+F + A A++
Sbjct: 476 VLRD-QNGQSKGCAFVTFATKHAAISAIK 503
Score = 51.2 bits (121), Expect = 3e-06
Identities = 25/82 (30%), Positives = 43/82 (51%)
Query: 176 QQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQ 235
+Q+ + NLF+ L + D LA TF F + + A V D Q+ S+ +GFVS+
Sbjct: 1019 KQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNP 1078
Query: 236 DQAQVAMETKQGFELNGRALRI 257
A A++ GF++ + L++
Sbjct: 1079 HSANAAIQAMHGFQIGSKRLKV 1100
>Hs5031693 [R] KOG0118 FOG: RRM domain
Length = 269
Score = 57.0 bits (136), Expect = 6e-08
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L DD L+++F+ G+++ ++ D ++ + FV Y + + A
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCLVMRDPQTKRSRGFGFVTYSCVTEVDAAIGAR 96
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K V+G+V++ A + +FVG + D ++ L F+++
Sbjct: 97 PFK-VDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGSIKEDTEEYNLRDYFEKYGKIETI 155
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKR---EPQQSQQ 270
VM D QSG+ RG+ V+F + D + K +NG + A + +P SQ+
Sbjct: 156 EVMEDRQSGKKRGFASVTFDDHDTVDKIVVQKY-HTINGHNCEVKKALAKQVMQPAGSQR 214
Query: 271 GQRRFNGPASG-RGGF 285
G+ +G G RG F
Sbjct: 215 GRGGGSGNCMGHRGNF 230
>Hs22049560 [R] KOG0118 FOG: RRM domain
Length = 222
Score = 56.6 bits (135), Expect = 8e-08
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN--YAFVEYFEPHDANVAYQT 156
L++G L ++ L+ +F+ G++ ++ D N++ C+ + FV Y + + A
Sbjct: 16 LFIGGLSFETTNESLRSHFEQWGTLMDCVVMRDPNTK-CSRGFGFVTYATVEEVDAAMNA 74
Query: 157 LNGKEVEGKVLKINWAFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQ 212
K V+G+V++ A SQ+ + T +FVG + D + L F+++
Sbjct: 75 RPHK-VDGRVVESKRAVSREDSQRPGAHLTVKKIFVGGIKEDTKEHHLRDYFEQYGKIEV 133
Query: 213 AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQSQQG 271
+M D SG+ RG+ FV+F + D + K +NG + A SK+E +
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHICEVRKALSKQEMASTSSS 192
Query: 272 QRRFNGPASGRGGF 285
QR SG G F
Sbjct: 193 QR----GQSGSGNF 202
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 56.6 bits (135), Expect = 8e-08
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 92 REKSDKI-LYVGNLP-KSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHD 149
R SD + +YVG L K++D DL + + + G + SVK+I + ++AFV + D
Sbjct: 8 RASSDSLTIYVGELSPKTLDSDLFRVFSNV-GKVLSVKLI-KRAEPVSSFAFVTFENEED 65
Query: 150 ANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPS 209
A A + E+ + +++ + ET N+FV +L D L F F
Sbjct: 66 AERAIREYKHYELHNRQIRV----MKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGE 121
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
+ V G+S+GYGFV F E+ A+
Sbjct: 122 IVSCKVA-TTSHGKSKGYGFVQFKEKKAAK 150
>At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 524
Score = 56.6 bits (135), Expect = 8e-08
Identities = 45/186 (24%), Positives = 84/186 (44%), Gaps = 21/186 (11%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN---VAY 154
L++G + D++ L++YF G + I+ D+ + + F+ + +P A +
Sbjct: 10 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 69
Query: 155 QTLNGKEVEGK---------VLK-----INWAFQSQQVNSD--ETFNLFVGDLNVDVDDA 198
++G+ VE K VLK ++ S N T +FVG L + +A
Sbjct: 70 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 129
Query: 199 TLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRIN 258
F +F + VM+D + R RG+GF++F ++ + + K ELNG+ + +
Sbjct: 130 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH-KTFHELNGKMVEVK 188
Query: 259 WASKRE 264
A +E
Sbjct: 189 RAVPKE 194
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
++FVG++ + + L F E S + +++D ++G+ +GYGF + +Q+ A AM
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 245 KQGFELNGRALRI-NWASKREPQQ 267
G E +GRALR+ N AS++ ++
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEE 100
Score = 49.7 bits (117), Expect = 1e-05
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDAN 151
++S + ++VGN+P ++ LK F GS+ S +++ D+ + + Y F EY + A
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 152 VAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNL 186
A + LNG+E G+ L+++ A + + N +E +L
Sbjct: 72 SAMRNLNGREFSGRALRVDNA--ASEKNKEELKSL 104
>CE24152 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
Length = 331
Score = 56.2 bits (134), Expect = 1e-07
Identities = 28/88 (31%), Positives = 48/88 (53%), Gaps = 2/88 (2%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
L+VG DV + L F F + + D +SG+ RG+GFV F + A +A++
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 246 QGFELNGRALRINWASKREPQQSQQGQR 273
EL G+ +R+N+A R P+ +++ Q+
Sbjct: 73 NESELFGKTIRVNFA--RPPKATERSQK 98
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/80 (33%), Positives = 44/80 (54%)
Query: 184 FNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAME 243
F+++VG+ + L F + + ++ D ++GR RG+ FV F E+ AQ A++
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 244 TKQGFELNGRALRINWASKR 263
G + NGRALR+N A R
Sbjct: 64 QFNGVDFNGRALRVNLAQNR 83
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
+YVGN P +D L YF G++S+V+I+ D+ + + +AFVE+ E A A
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 158 NGKEVEGKVLKINWA 172
NG + G+ L++N A
Sbjct: 66 NGVDFNGRALRVNLA 80
>SPBC23E6.01c [R] KOG0118 FOG: RRM domain
Length = 255
Score = 55.5 bits (132), Expect = 2e-07
Identities = 25/80 (31%), Positives = 40/80 (49%)
Query: 359 TTAYIGNIPHFAQEHDLIPLLQNFGFIIDFKHYPEKGCCFIKYDTHEQAALCIVALTNFP 418
+T ++G + F E +L L QNFG I+ K P KGC F+++ + A + I L +P
Sbjct: 85 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 144
Query: 419 FQGRNLRTGWGKEKPTFIRP 438
+R WG+ + P
Sbjct: 145 LGNSRIRLSWGRNQNPIAAP 164
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 55.5 bits (132), Expect = 2e-07
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 180 SDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
+ + F+++VG++ + + F +++D ++GR RG+ FV F E+ AQ
Sbjct: 2 ASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQ 61
Query: 240 VAMETKQGFELNGRALRINWASK 262
A+E G NGR LR+N+A+K
Sbjct: 62 RAVEQLNGVAFNGRNLRVNYANK 84
>At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 55.5 bits (132), Expect = 2e-07
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 22/205 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQT- 156
L++G + D++LL++YF G + V ++ +K + + FV + +P + Q
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 157 --LNGKEVEGKVL----KINWAFQSQQVNSDETFN---------LFVGDLNVDVDDATLA 201
++ ++V+ K + + A +S N+ F+ +FVG L +
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFR 127
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS 261
F+ + A +M D + R RG+GFVSF +D + + K +LNG+ + + A
Sbjct: 128 AYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH-KTFHDLNGKQVEVKRAL 186
Query: 262 KREPQQSQQGQRRFNGPAS-GRGGF 285
P+ + G G S G GGF
Sbjct: 187 ---PKDANPGIASGGGRGSGGAGGF 208
>At1g18630 [R] KOG0118 FOG: RRM domain
Length = 155
Score = 55.5 bits (132), Expect = 2e-07
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
+FVG L+ D L F F + A V+ D +SG SRG+GFV++ + A AM+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 246 QGFELNGRALRINWASKREPQQSQQGQRRFNGPASGRGGF 285
Q EL+GR + ++ A G R G GRGG+
Sbjct: 98 QNKELDGRIIGVHPADS-GGGGGGGGFARRGGYGGGRGGY 136
>At1g13690 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
Length = 177
Score = 55.5 bits (132), Expect = 2e-07
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 172 AFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVS 231
A Q QQ T L+VG L +V+++ L F F D + + R +GFV+
Sbjct: 3 AVQQQQAMQKNT--LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVT 60
Query: 232 FGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
F E++ A AM+ G EL GR L +N+A + + +QG
Sbjct: 61 FLEREDASAAMDNMDGAELYGRVLTVNYALPEKIKGGEQG 100
>At1g01080 [R] KOG0118 FOG: RRM domain
Length = 293
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 18/174 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYA-FVEYFEPHDANVAYQTL 157
LYV N+P+S D L FQ G++ SV++ + + E + +V + A +A +L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 158 NGKEVEGKVLKINWAFQS--------QQVNS--------DETFNLFVGDLNVDVDDATLA 201
+G EV G+ +++ ++ + +NS + ++VG+L L
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLR 229
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRAL 255
F +F + + V+ D ++GR+R + F+SF ++ A+ + G + GR +
Sbjct: 230 NHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRI 282
Score = 50.1 bits (118), Expect = 7e-06
Identities = 26/92 (28%), Positives = 48/92 (51%)
Query: 174 QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFG 233
+++ V L+V ++ D A L F+ F + I V + Q+G SRG G+V+ G
Sbjct: 98 KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMG 157
Query: 234 EQDQAQVAMETKQGFELNGRALRINWASKREP 265
+ A++A+ + G E+ GR +R+ ++ P
Sbjct: 158 SINSAKIAIASLDGTEVGGREMRVRYSVDMNP 189
>HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 562
Score = 54.7 bits (130), Expect = 3e-07
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 99 LYVGNLPKS-IDDDLLKQYFQIGGSISSVKII--PDKNSQECNYAFVEYFEPHDANVAYQ 155
L+VG++PKS + +L+++ Q+ ++ V + PD + + F+EY + A A +
Sbjct: 245 LFVGSIPKSKTKEQILEEFSQVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304
Query: 156 TL-NGK-EVEGKVLKINWAFQSQQVNSDETFN---LFVGDLNVDVDDATLAGTFKEFPSF 210
L +GK +V G V + WA + + + LFV +L V + L F +F
Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKL 364
Query: 211 IQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQ 270
+ + D Y F+ F E+D A AME G +L G + I +A + ++ ++
Sbjct: 365 ERVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKER 416
Query: 271 GQRR 274
+R
Sbjct: 417 KAQR 420
>Hs9558733 [R] KOG0118 FOG: RRM domain
Length = 282
Score = 54.7 bits (130), Expect = 3e-07
Identities = 32/108 (29%), Positives = 52/108 (47%)
Query: 177 QVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQD 236
+ N D L V L++ + L F + +V++D ++GRSRG+ FV F D
Sbjct: 112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171
Query: 237 QAQVAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPASGRGG 284
++ AME G EL+GR +R++++ + G SG GG
Sbjct: 172 DSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGG 219
>Hs4759098 [R] KOG0118 FOG: RRM domain
Length = 288
Score = 54.3 bits (129), Expect = 4e-07
Identities = 29/95 (30%), Positives = 47/95 (48%)
Query: 177 QVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQD 236
+ N D L V L++ + L F ++ +++D QS RSRG+ FV F D
Sbjct: 111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 237 QAQVAMETKQGFELNGRALRINWASKREPQQSQQG 271
A+ A E G EL+GR +R++++ + P G
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG 205
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 54.3 bits (129), Expect = 4e-07
Identities = 26/84 (30%), Positives = 49/84 (57%), Gaps = 1/84 (1%)
Query: 185 NLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMET 244
++FVG++ + + L F E + +++D ++G+ +GYGF + +Q+ A AM
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 245 KQGFELNGRALRI-NWASKREPQQ 267
G E +GRALR+ N AS++ ++
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEE 100
>Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 328
Score = 53.9 bits (128), Expect = 5e-07
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVA---- 153
+++G L D L+ YF G I ++ D ++ + FV + +P +
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 82
Query: 154 YQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
+ L+ K ++ KV + ++Q T +FVG L+ + + F++F A
Sbjct: 83 HHELDSKTIDPKVA---FPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
+M+D + R RG+GFV+F +D + E E+N + + A +E
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEI-HFHEINNKMVECKKAQPKE 189
>At2g16260 [R] KOG0118 FOG: RRM domain
Length = 185
Score = 53.9 bits (128), Expect = 5e-07
Identities = 31/107 (28%), Positives = 52/107 (47%), Gaps = 8/107 (7%)
Query: 180 SDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
+D + FVG L D+ ++ F EF + ++ D ++GRS+G+ FV+F ++D +
Sbjct: 40 ADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMR 99
Query: 240 VAMETKQGFELNGRALRINWASKREPQQSQQGQRRFNGPASGRGGFR 286
A++ G EL+GR + Q G R G GG+R
Sbjct: 100 TAIDRMNGQELDGRNI--------TAQARGSGTRGGMVGGYGSGGYR 138
>At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 497
Score = 53.9 bits (128), Expect = 5e-07
Identities = 38/167 (22%), Positives = 77/167 (45%), Gaps = 4/167 (2%)
Query: 96 DKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQ 155
D+++ V NL +K +F + SV+++ + + Y FVE+ + AN A +
Sbjct: 157 DEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALE 216
Query: 156 TLNGKEVEGKVLKINWAFQSQQVNSDE--TFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
NG+ + + + +S + T LFV +L + + + FK+ +
Sbjct: 217 EKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHV 276
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
++ + Q G+ G+GFV F ++A+ A+ K G L+ + ++ A
Sbjct: 277 RLIVNSQ-GKHAGWGFVEFASANEAEKAL-VKNGEYLHNYKISLDGA 321
>Hs16519537 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 481
Score = 53.5 bits (127), Expect = 7e-07
Identities = 29/86 (33%), Positives = 44/86 (50%)
Query: 172 AFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVS 231
A QQ E NLF+ L + DA L TF F + + A V D + +S+ +GFVS
Sbjct: 384 ALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVS 443
Query: 232 FGEQDQAQVAMETKQGFELNGRALRI 257
F AQ A++ GF++ + L++
Sbjct: 444 FDNPTSAQTAIQAMNGFQIGMKRLKV 469
>At5g19960 [R] KOG0118 FOG: RRM domain
Length = 335
Score = 53.5 bits (127), Expect = 7e-07
Identities = 32/125 (25%), Positives = 55/125 (43%), Gaps = 25/125 (20%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
+YVG LP I ++ +++ F I GS+ +VKI+ D++ + Y FV + A+ A + ++
Sbjct: 7 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 66
Query: 159 GKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWD 218
GK + G+ +++N D T G P +Q H WD
Sbjct: 67 GKSIGGRAVRVN-------------------------DVTTRGGRMNPGPGRLQPHGGWD 101
Query: 219 MQSGR 223
R
Sbjct: 102 RSPDR 106
>Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 633
Score = 53.1 bits (126), Expect = 9e-07
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 99 LYVGNLPKS-IDDDLLKQYFQIGGSISSVKII--PDKNSQECNYAFVEYFEPHDANVAYQ 155
L+VG++PK+ +++L+++ ++ + V + PD + + F+EY + A A +
Sbjct: 248 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 307
Query: 156 TL-NGK-EVEGKVLKINWAFQSQQVNSDETFN---LFVGDLNVDVDDATLAGTFKEFPSF 210
L +GK +V G V+ + WA ++ + + LFV +L V + L +F EF
Sbjct: 308 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKL 367
Query: 211 IQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA-----SKREP 265
+ + D Y FV F ++ A AM+ G E+ G + I A ++E
Sbjct: 368 ERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 419
Query: 266 QQSQQGQR-------------------RFNGPASGRGGF 285
Q ++Q R R G GRGG+
Sbjct: 420 QAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 458
>Hs13123780 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 481
Score = 53.1 bits (126), Expect = 9e-07
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 174 QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFG 233
Q QQ E NLF+ L + D L F F + I + V D + +S+ +GFVSF
Sbjct: 390 QQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFD 449
Query: 234 EQDQAQVAMETKQGFELNGRALRINWASKREP 265
AQ A++ GF++ + L++ ++P
Sbjct: 450 NPASAQAAIQAMNGFQIGMKRLKVQLKRPKDP 481
>At3g18610 [K] KOG4210 Nuclear localization sequence binding protein
Length = 636
Score = 53.1 bits (126), Expect = 9e-07
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 28/213 (13%)
Query: 84 PVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVE 143
P TQGG K L+ GNL I ++ +F+ G + V++ + Y +E
Sbjct: 375 PTNQTQGG----SKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIE 430
Query: 144 YFEPHDANVAYQTLNGKEVEGKVLKINWAFQ---------SQQVNSDETFNLFV----GD 190
+ P +A A + +NGK + G+ ++++ A + ++ ++ ++V
Sbjct: 431 FASPEEAQKALE-MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSS 489
Query: 191 LNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSF--GEQDQAQVAMETKQGF 248
L D L F + + HV D ++G SRG+ ++ G + Q++ G
Sbjct: 490 LGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLS-----GS 544
Query: 249 ELNGRALRINWASKREPQQSQQGQRRFNGPASG 281
E+ G + + + P+ S +G+ PA G
Sbjct: 545 EIGGGNIHV---EESRPRDSDEGRSSNRAPARG 574
>Hs17458873 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 52.8 bits (125), Expect = 1e-06
Identities = 43/197 (21%), Positives = 81/197 (40%), Gaps = 15/197 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L++G L D+ L+ + + G+++ ++ D N+ + FV Y + + A
Sbjct: 16 LFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNAR 75
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDETF----NLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
K + G+V++ A + + +FVG + D ++ L ++++
Sbjct: 76 PHK-MGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVI 134
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK------QGFELNGRALRINWASKREPQQ 267
+M D SG+ R + FV+F D + K E+ + AS Q+
Sbjct: 135 EIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQR 194
Query: 268 SQQGQRRFNGPASGRGG 284
S+ G F G GRGG
Sbjct: 195 SRSGSGNFGG---GRGG 208
>CE17059 [R] KOG0118 FOG: RRM domain
Length = 346
Score = 52.8 bits (125), Expect = 1e-06
Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
++VG L + DDL+++++ G I+ + ++ D ++ + FV + + + A +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ- 83
Query: 158 NGKEVEGKVLKINWAFQSQQVNSDE----TFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
++GK + A N E T L+V + D + L F ++ + ++
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKS 143
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQ------- 266
++ D + + RG+GFV+F + D + K +NG + ++
Sbjct: 144 EIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHM-VNGHRCDVRKGLSKDEMSKAQMNR 202
Query: 267 -------QSQQGQR-RFNGPASGRGGF 285
+S+ GQR +NG G GG+
Sbjct: 203 DRETRGGRSRDGQRGGYNGGGGGGGGW 229
>At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 473
Score = 52.8 bits (125), Expect = 1e-06
Identities = 42/183 (22%), Positives = 78/183 (41%), Gaps = 18/183 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN---VAY 154
L++G + D++ L+ YF G + I+ D+ + + F+ + +P + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 155 QTLNGKEVEGK---------VLKINWA----FQSQQVNSDETFNLFVGDLNVDVDDATLA 201
++G+ VE K VLK + + T +FVG L + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS 261
F +F + VM+D + R RG+GF++F D + K ELNG+ + + A
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH-KTFHELNGKLVEVKRAV 186
Query: 262 KRE 264
+E
Sbjct: 187 PKE 189
>SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 52.4 bits (124), Expect = 1e-06
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDAN 151
E+ + ++V L + L +F+ G + +I+ DK S + A+VE+
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295
Query: 152 VAYQTLNGKEVEG-----------KVLKINWAFQSQQVNSDET--FNLFVGDLNVDVDDA 198
A L+GK + G K K A + + S E L V +++ ++ D
Sbjct: 296 AAI-ALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDE 354
Query: 199 TLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
+ F+ F H+ D Q+ RS+G+G++ + A+ A+E GF+L GR +R+
Sbjct: 355 DVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>At5g65260 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 220
Score = 52.4 bits (124), Expect = 1e-06
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 83 APVLATQGGREKSD-KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAF 141
A + A Q G+E+ D + ++VGN+ + + ++Q+FQ G++ V I+ DK Q +A+
Sbjct: 77 ASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAY 136
Query: 142 VEYFEPHDANVAYQTLNGKEVEGKVLKI 169
VE+ E A Q LN E+ G+ LK+
Sbjct: 137 VEFVEVEAVQEALQ-LNESELHGRQLKV 163
>Hs14734196 [R] KOG0118 FOG: RRM domain
Length = 294
Score = 52.0 bits (123), Expect = 2e-06
Identities = 45/181 (24%), Positives = 84/181 (45%), Gaps = 11/181 (6%)
Query: 113 LKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTLNGKEVEGKVLKINW 171
L+ +F+ G ++ ++ D N++ + FV Y + + A K V+G+V++
Sbjct: 4 LRSHFEQWGMLTDCVVMRDPNTKHPRGFGFVTYATVEEVDAAMNARPHK-VDGRVVEPKR 62
Query: 172 AFQ---SQQVNSDETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGY 227
A S++ + T +FVG + D ++ L F+++ +M D SG+ RG+
Sbjct: 63 AVSREDSERPGAHLTVKKIFVGGIKEDTEEHHLRDDFEQYGKIEVIEIMTDRGSGKKRGF 122
Query: 228 GFVSFGEQDQAQVAMETKQGFELNGRALRINWA-SKREPQQSQQGQRRFNGPAS---GRG 283
FV+F + D + K +NG + A S++E + QR +G + GRG
Sbjct: 123 AFVNFDDHDSMDKIVIQKY-HTVNGHNCEVRKAPSQQEMDSASSSQRGRSGSGNFGGGRG 181
Query: 284 G 284
G
Sbjct: 182 G 182
>Hs14110417 [R] KOG0118 FOG: RRM domain
Length = 336
Score = 52.0 bits (123), Expect = 2e-06
Identities = 47/199 (23%), Positives = 82/199 (40%), Gaps = 14/199 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDAN 151
E+ + +++G L LK YF G + + D + + FV + E +
Sbjct: 74 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
Query: 152 VAYQT----LNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEF 207
LNGK ++ K K + +FVG L+ D + + F F
Sbjct: 134 KVMDQKEHKLNGKVIDPKRAKA-------MKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 186
Query: 208 PSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK-QGFELNGRALRINWASKREPQ 266
+ D ++ + RG+ F++F E++ + ME K L+ +++ + ++ Q
Sbjct: 187 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 246
Query: 267 QSQQGQR-RFNGPASGRGG 284
Q Q G R F G A GRGG
Sbjct: 247 QQQWGSRGGFAGRARGRGG 265
>CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 584
Score = 52.0 bits (123), Expect = 2e-06
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQEC-NYAFVEYFEPHDANVAYQTL 157
++VG +P+ ++ ++ F+ GS+ S I+ DK++Q FV ++ DA A L
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGAL 116
Query: 158 -NGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVM 216
N K +EG + + + LF+G L+ ++ L F +F V+
Sbjct: 117 HNIKVIEGMHHPVQ--MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVL 174
Query: 217 WDMQSGRSRGYGFVSFGEQDQAQVA---METKQGFELNGRALRINWA-SKREPQQSQQGQ 272
D Q G+SRG FV+F + A VA M Q E L + +A ++++ +
Sbjct: 175 RD-QDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTKSM 233
Query: 273 RRFNGPASGRGG 284
+G S +GG
Sbjct: 234 ITGSGAGSPKGG 245
>At5g04280 [R] KOG0118 FOG: RRM domain
Length = 310
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 182 ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVA 241
E +FVG L+ +V D L F F + +M + +GRSRG+GF++F ++ +
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 242 METKQGFELNGRALRINWASKR-----EPQQSQQGQRRFNGPASGRGGF 285
+ G + R + +N A + +G R +G+G F
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSF 113
>YIR005w [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 148
Score = 51.6 bits (122), Expect = 3e-06
Identities = 28/116 (24%), Positives = 65/116 (55%), Gaps = 4/116 (3%)
Query: 155 QTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAH 214
Q +N KE++ +L + ++ ++ D + +++G+LN ++ + + F E+ +
Sbjct: 5 QQINDKELQSGILSPHQSWHNEY--KDNAY-IYIGNLNRELTEGDILTVFSEYGVPVDVI 61
Query: 215 VMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQQ 270
+ D +G S+G+ ++ + +Q +A++ GF++ GRAL+I+ R P++S Q
Sbjct: 62 LSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYR-PKRSLQ 116
>Hs20535199 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 269
Score = 51.6 bits (122), Expect = 3e-06
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 121 GSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLNGKEVEGKVLKINWA-------- 172
G SSVK+I D+ + + FV FE H+ +NGKE G I A
Sbjct: 36 GPASSVKVITDEGGKSKGFGFVS-FERHEDPQTAMDVNGKEFSGNQTYICLAPKKVEEQT 94
Query: 173 --------FQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRS 224
+ ++ + N+ V +L+ +DD L F F A+VM M+ G S
Sbjct: 95 ELKCKFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVM--MEGGCS 152
Query: 225 RGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
+ +GFV F ++ A+ G + + L + A +E
Sbjct: 153 KRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKE 192
>7301511 [R] KOG0118 FOG: RRM domain
Length = 471
Score = 51.6 bits (122), Expect = 3e-06
Identities = 38/153 (24%), Positives = 71/153 (45%), Gaps = 6/153 (3%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQT- 156
L++G L ++ LK ++ G + V ++ D ++ + F+ Y + + A +
Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENR 93
Query: 157 ---LNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
++GK VE K +S++ N LFVG L + D+ L F +F + +
Sbjct: 94 PHIIDGKTVEAKRALPRPERESRETNISVK-KLFVGGLKDNHDEECLREYFLQFGNVVSV 152
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQ 246
++ D +G+ RG+ FV F + D A+ KQ
Sbjct: 153 KLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQ 185
>Hs20149667 [R] KOG0112 Large RNA-binding protein (RRM superfamily)
Length = 957
Score = 51.2 bits (121), Expect = 3e-06
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANV 152
+++++ L++GNL ++ + L++ F G I+ V I Q Y F+++ ++
Sbjct: 370 QRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHR 429
Query: 153 AYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQ 212
A ++GK + +KI + + T L+VG L V A LA F F +
Sbjct: 430 AKLAMSGKIIIRNPIKIGYG------KATPTTRLWVGGLGPWVPLAALAREFDRFGTIRT 483
Query: 213 AHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNG--RALRINWASKREPQQSQ 269
D + G S + ++ + D A A +GF L G R LR+++A Q Q
Sbjct: 484 I----DYRKGDS--WAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQ 536
>YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 685
Score = 50.8 bits (120), Expect = 4e-06
Identities = 30/79 (37%), Positives = 42/79 (52%), Gaps = 1/79 (1%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
LFV + DV D LA F F A V+ D RSRG+GFVSF +D + A+
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 86
Query: 246 QGFELNGRALRINWASKRE 264
+ + NG LR++ A +R+
Sbjct: 87 RKTKFNGHILRVDIAKRRD 105
>Hs9994185 [R] KOG4454 RNA binding protein (RRM superfamily)
Length = 266
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 94 KSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVA 153
++D+ L+VGNL + ++LL + F G + VKI DK+ + +AFV + H+ +V
Sbjct: 7 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNF--KHEVSVP 64
Query: 154 Y--QTLNGKEVEGKVLKINWAFQSQQVNSD 181
Y LNG ++ G+ +KI + S D
Sbjct: 65 YAMNLLNGIKLYGRPIKIQFRSGSSHAPQD 94
>Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 759
Score = 50.8 bits (120), Expect = 4e-06
Identities = 42/195 (21%), Positives = 82/195 (41%), Gaps = 24/195 (12%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
L+VG LP S + L++ F G + ++ +K S+ C + +V + D A + +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 158 NGKE-------VEGKVLKINWAFQSQQVNS---------------DETFNLFVGDLNVDV 195
E V K L+ + + NS D+ L + +L+
Sbjct: 66 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKC 125
Query: 196 DDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRAL 255
+ L F +F + ++ ++ G+ RG+GFV F +A A++ E+ GR +
Sbjct: 126 SEDDLKTVFAQFGAVLEVNIP-RKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 256 RINWASKREPQQSQQ 270
++WA ++ + Q
Sbjct: 185 AVDWAVAKDKYKDTQ 199
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 50.8 bits (120), Expect = 4e-06
Identities = 49/199 (24%), Positives = 76/199 (37%), Gaps = 19/199 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ----ECNYAFVEYFEPHDANVAY 154
L++ NL ++ LK+ F G++ S I KN + FVEY +P A A
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 155 QTLNGKEVEGKVLK-----------INWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGT 203
+ L G V+G L+ + A + Q T + V ++ +
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 204 FKEFPSFIQAHVMWDMQ-SGRSRGYGFVSF-GEQDQAQVAMETKQGFELNGRALRINWAS 261
F F + M +G RG+GFV F +QD + L GR L + WA
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWAD 911
Query: 262 KREPQQS--QQGQRRFNGP 278
Q+ Q+ F+ P
Sbjct: 912 SEVTLQALRQKTAAHFHEP 930
>Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 362
Score = 50.8 bits (120), Expect = 4e-06
Identities = 42/182 (23%), Positives = 82/182 (44%), Gaps = 8/182 (4%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
+++G L + L++YF G + ++ D ++ + FV + + +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ- 80
Query: 158 NGKEVEGKVLKINWAF--QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHV 215
+ E++ K + AF ++Q T +FVG L+V+ + F++F A +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
Query: 216 MWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE---PQQSQQGQ 272
M+D + R RG+GFV+F +D + E E+N + + A +E P S +G+
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEI-HFHEINNKMVECKKAQPKEVMSPTGSARGR 199
Query: 273 RR 274
R
Sbjct: 200 SR 201
>Hs21450675 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 533
Score = 50.8 bits (120), Expect = 4e-06
Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 13/180 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAFVEYFEPHDANVAYQTLN 158
++VG +P+ + +D L F+ G I +++ + + + YAFV Y +A +A + LN
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122
Query: 159 GKEVE-GKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW 217
E+ GK + + S + LF+G + + + K+ + +++
Sbjct: 123 NYEIRPGKFIGV--------CVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVY 174
Query: 218 DMQSGRSRGYGFVSFGEQDQAQVAMETKQ----GFELNGRALRINWASKREPQQSQQGQR 273
+ +++ GF + AM ++ F+L G ++++WA + + QR
Sbjct: 175 PSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQR 234
>Hs14110420 [R] KOG0118 FOG: RRM domain
Length = 355
Score = 50.8 bits (120), Expect = 4e-06
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQT- 156
+++G L LK YF G + + D + + FV + E +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 157 ---LNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
LNGK ++ K K + +FVG L+ D + + F F
Sbjct: 159 EHKLNGKVIDPKRAKA-------MKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK-QGFELNGRALRINWASKREPQQSQQGQ 272
+ D ++ + RG+ F++F E++ + ME K L+ +++ + ++ QQ Q G
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 271
Query: 273 R-RFNGPASGRGG 284
R F G A GRGG
Sbjct: 272 RGGFAGRARGRGG 284
>Hs14110414 [R] KOG0118 FOG: RRM domain
Length = 306
Score = 50.8 bits (120), Expect = 4e-06
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDK-NSQECNYAFVEYFEPHDANVAYQT- 156
+++G L LK YF G + + D + + FV + E +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 157 ---LNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
LNGK ++ K K + +FVG L+ D + + F F
Sbjct: 159 EHKLNGKVIDPKRAKA-------MKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK-QGFELNGRALRINWASKREPQQSQQGQ 272
+ D ++ + RG+ F++F E++ + ME K L+ +++ + ++ QQ Q G
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 271
Query: 273 R-RFNGPASGRGG 284
R F G A GRGG
Sbjct: 272 RGGFAGRARGRGG 284
>At5g25060 [R] KOG0151 Predicted splicing regulator contains RRM SWAP and RPR
domains
Length = 944
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/81 (35%), Positives = 40/81 (48%), Gaps = 3/81 (3%)
Query: 182 ETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMW---DMQSGRSRGYGFVSFGEQDQA 238
+T NL+VG+L+ VD+ L TF F +MW D + R R GFVSF +
Sbjct: 175 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADG 234
Query: 239 QVAMETKQGFELNGRALRINW 259
Q A + QG + L+I W
Sbjct: 235 QAAKDEMQGIIVYEYELKIGW 255
>At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 492
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 177 QVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQD 236
Q E NLF+ ++ + D LA F+ F + A V D +G S+ +GFVS+ Q
Sbjct: 342 QTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQA 401
Query: 237 QAQVAMETKQGFELNGRALRINWASKREPQQSQQGQRR 274
AQ A++ G L G+ L++ KR+ Q + R
Sbjct: 402 AAQNAIDMMNGRHLGGKKLKVQ--LKRDSNNGQPSKFR 437
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 50.4 bits (119), Expect = 6e-06
Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 17/187 (9%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQ----ECNYAFVEYFEPHDANVAY 154
L++ NL ++ LK+ F G++ S I KN + FVEY +P A A
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 155 QTLNGKEVEGKVLK-----------INWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGT 203
+ L G V+G L+ + A + Q T + V ++ +
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 204 FKEFPSFIQAHVMWDMQ-SGRSRGYGFVSF-GEQDQAQVAMETKQGFELNGRALRINWAS 261
F F + M +G RG+GFV F +QD + L GR L + WA
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWAD 911
Query: 262 KREPQQS 268
Q+
Sbjct: 912 SEVTLQA 918
>CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 50.4 bits (119), Expect = 6e-06
Identities = 39/171 (22%), Positives = 79/171 (45%), Gaps = 9/171 (5%)
Query: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDANVAYQTL 157
+++G L + L+ YF G ++ ++ D ++ + F+ + +P + + L
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVD---KVL 103
Query: 158 NGKE--VEGKVLKINWAF--QSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
N +E ++GK + AF ++Q +T +F+G L+ + F+ + A
Sbjct: 104 NNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDA 163
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKRE 264
+M+D + R RG+GFV+F + A E E+NG+ + A +E
Sbjct: 164 MLMFDKATQRHRGFGFVTFDSDEVADKVCEI-HFHEINGKMVECKKAQPKE 213
>At5g10350 [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 217
Score = 50.4 bits (119), Expect = 6e-06
Identities = 30/89 (33%), Positives = 52/89 (57%), Gaps = 2/89 (2%)
Query: 83 APVLATQGGREKSD-KILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAF 141
A + A Q G+E+ D + +YVGN+ + + ++ +FQ G+++ V I+ DK Q +A+
Sbjct: 74 ASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAY 133
Query: 142 VEYFEPHDANVAYQTLNGKEVEGKVLKIN 170
VE+ E A Q LN E+ G+ LK++
Sbjct: 134 VEFVEVEAVQEALQ-LNESELHGRQLKVS 161
>At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 521
Score = 50.4 bits (119), Expect = 6e-06
Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 99 LYVGNLPKS-IDDDLLKQYFQIGGSISSVKIIPDKNSQECN--YAFVEYFEPHDANVAYQ 155
L++GN+PK+ +D+ K +G + ++++I D + N +AFV Y+ A+ + Q
Sbjct: 224 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 283
Query: 156 TL--NGKEVEGKVLKINWA----FQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPS 209
+ + ++EG + WA + + L+V ++ + L F+
Sbjct: 284 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGE 343
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRI 257
+ ++ G R +GFV + E+ A A++ + +E+NG+ L +
Sbjct: 344 VTK--IVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 389
>7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 673
Score = 50.4 bits (119), Expect = 6e-06
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 18/181 (9%)
Query: 99 LYVGNLPKSID-DDLLKQYFQIGGSISSVKII--PDKNSQECNYAFVEYFEPHDANVAYQ 155
L+VGN+PK+ D D+L++++ + + V I PD + + F+EY A++A +
Sbjct: 284 LFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKR 343
Query: 156 TLNGKEVE--GKVLKINWAFQSQQVNSDETFN----LFVGDLNVDVDDATLAGTFKEFPS 209
L ++ G + ++WA Q+ ++T + L+V +L DV + L F+++
Sbjct: 344 RLGTGRIKVWGCDIIVDWA-DPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGK 402
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
+ + D Y F+ F ++D A AM G E+ + ++ A ++ +
Sbjct: 403 VERVKKIKD--------YAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKK 454
Query: 270 Q 270
+
Sbjct: 455 E 455
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 50.1 bits (118), Expect = 7e-06
Identities = 36/181 (19%), Positives = 89/181 (48%), Gaps = 13/181 (7%)
Query: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN 151
E+ + ++ +P + + ++F G + V++I D+NS+ ++E+++
Sbjct: 164 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 223
Query: 152 VAYQTLNGKEVEGK--VLKINWAFQSQQVNSDETFN--------LFVGDLNVDVDDATLA 201
+A L+G+ G+ ++K + A ++ ++ T L+VG+L+ ++ + L
Sbjct: 224 MAI-ALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLR 282
Query: 202 GTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQG-FELNGRALRINWA 260
F+ F + D ++G+ +G+GF+ F + + ++ A G E+ GR ++++
Sbjct: 283 QIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSV 342
Query: 261 S 261
S
Sbjct: 343 S 343
>At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 414
Score = 50.1 bits (118), Expect = 7e-06
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
+FVG++ D + L E + ++ D ++G+ +GYGF + +++ A A
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 246 QGFELNGRALRINWASKREPQQSQQGQRRFNGPASG 281
Q +E+NGR LR+++A + G GP G
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTPG--ALGGPQVG 104
>At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 161
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/128 (21%), Positives = 65/128 (49%), Gaps = 9/128 (7%)
Query: 155 QTLNGKEVE-GKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFIQA 213
Q++N KE++ G + +W ++ ++VG+L D+ + L F ++ +
Sbjct: 5 QSINAKELDLGIYDEASW-----HAKYKDSAYVYVGELPYDLTEGDLLAVFSQYGEVVDL 59
Query: 214 HVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWAS---KREPQQSQQ 270
+++ D +GRS+ + FV++ +Q +A++ G ++ GR +++ KRE + +
Sbjct: 60 NLVRDKGTGRSKRFAFVAYEDQRSTNLAVDNINGAKVLGRIIKVEHCGKYLKREEEDEET 119
Query: 271 GQRRFNGP 278
Q++ P
Sbjct: 120 KQKKREAP 127
>YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 296
Score = 49.7 bits (117), Expect = 1e-05
Identities = 26/102 (25%), Positives = 48/102 (46%), Gaps = 4/102 (3%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
+++G + D + + I +M+D Q+GRS+GY F+ F + + + A+
Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79
Query: 246 QGFELNGRALRINWASKRE----PQQSQQGQRRFNGPASGRG 283
G++L R L+ ++S + QQ QQ NG + G
Sbjct: 80 NGYQLGSRFLKCGYSSNSDISGVSQQQQQQYNNINGNNNNNG 121
>Hs5174637 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase
Length = 301
Score = 49.7 bits (117), Expect = 1e-05
Identities = 28/89 (31%), Positives = 44/89 (48%), Gaps = 3/89 (3%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
L+VG L +VDD L F F + D ++ + RG+ FV F + A A++
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 246 QGFELNGRALRINWASKREPQQSQQGQRR 274
EL GR +R+N A +P + ++G R
Sbjct: 68 NESELFGRTIRVNLA---KPMRIKEGSSR 93
>ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 293
Score = 49.7 bits (117), Expect = 1e-05
Identities = 40/183 (21%), Positives = 82/183 (43%), Gaps = 7/183 (3%)
Query: 92 REKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN--YAFVEYFEPHD 149
RE +++ + + + LK + G ++ V I P N + N + +VE+ + D
Sbjct: 82 RENPSLTVFIKGISYDLTEYDLKSEMEKIGKVARVGI-PMTNDHKRNKGFGYVEFCKEED 140
Query: 150 ANVAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPS 209
A + L+G G+ + +N A + E ++V ++ + D L F+
Sbjct: 141 VKKALK-LDGTVFLGREVVVNMAHPRA---NKERHTIYVSNIPYECDKRDLKKYFEGMGE 196
Query: 210 FIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWASKREPQQSQ 269
+ + +D + R +GYGFV FG ++ + ++ K FE + R + + RE ++
Sbjct: 197 VVGMSLPYDRDNNRLKGYGFVDFGNKEDYERVLKKKLVFEDSTMYHRPAYKNNREDRRDS 256
Query: 270 QGQ 272
G+
Sbjct: 257 NGR 259
>At1g73530 [R] KOG0118 FOG: RRM domain
Length = 181
Score = 49.7 bits (117), Expect = 1e-05
Identities = 27/101 (26%), Positives = 51/101 (49%)
Query: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
L+V L+ + TL TF++F + I +++ D + R +G+ F+ + +++A A++
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 246 QGFELNGRALRINWASKREPQQSQQGQRRFNGPASGRGGFR 286
G L+GR + + A R + +R F P S FR
Sbjct: 139 HGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTFR 179
>At1g33470 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 117
Score = 49.7 bits (117), Expect = 1e-05
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 181 DETFN-LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQ 239
D TF +FVG L + +L F++F ++A V+ D SGRS+GYGFV+F + + AQ
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 240 VAMETKQGFELNGRALRINWAS----KREPQQSQQGQRRF 275
A ++GR N A+ + +P G RF
Sbjct: 63 KAC-VDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGTFRF 101
>7296892 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 416
Score = 49.7 bits (117), Expect = 1e-05
Identities = 34/110 (30%), Positives = 57/110 (50%), Gaps = 10/110 (9%)
Query: 82 AAPVLATQGGREKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECNYAF 141
AA + + +++ LYVGNLP+ I + L+ F G I S+ ++P Q+C AF
Sbjct: 215 AASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVP---RQQC--AF 269
Query: 142 VEYFEPHDANVAYQ-TLNGKEVEGKVLKINWAF----QSQQVNSDETFNL 186
V+Y + + A +A + T N ++G+ + I WA Q +D F+L
Sbjct: 270 VQYTKRNAAELAAERTFNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFDL 319
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,753,200
Number of Sequences: 60738
Number of extensions: 800053
Number of successful extensions: 3843
Number of sequences better than 1.0e-05: 211
Number of HSP's better than 0.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 2882
Number of HSP's gapped (non-prelim): 727
length of query: 475
length of database: 30,389,216
effective HSP length: 110
effective length of query: 365
effective length of database: 23,708,036
effective search space: 8653433140
effective search space used: 8653433140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)