ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV2406    suspect: LH   B     KOG4718  Chromatin structure and dynamics                               Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1)

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV2406 839916 838948 -323 
         (323 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR007w [B] KOG4718 Non-SMC (structural maintenance of chromosom...   172   8e-43

>YLR007w [B] KOG4718 Non-SMC (structural maintenance of chromosomes) element
           1 protein (NSE1)
          Length = 336

 Score =  172 bits (435), Expect = 8e-43
 Identities = 101/321 (31%), Positives = 165/321 (50%), Gaps = 29/321 (9%)

Query: 28  RYLLQFILQCKGIVSENSLLSCYLTLENDAGRFLKDEPLSLTAWRLKLTDHVSKLNLQLS 87
           +YLLQ+IL  +GI  EN+L+   + LE DA     +   S+  W  KL D+++ +N++L+
Sbjct: 19  KYLLQYILSARGICHENALILALMRLETDASTL--NTEWSIQQWVDKLNDYINAINVKLN 76

Query: 88  PLNYRITMVNHPMGKSYVS----RRFENFITD------------LVDANWPPNARFYVYT 131
            L Y+I  +NH +G++ V+    + FE+F  +            L     P + RF+VY 
Sbjct: 77  LLGYKIIRINHGIGRNAVTLKAKQNFESFEDNTAIRAHNNDYAVLQSIVLPESNRFFVYV 136

Query: 132 NLKYDSQMKMATSFSAADIGFLKWSIEKILTESSYVQQFXXXXXXXXXXXXXXNILREKY 191
           NL    + K+AT F+  +I F+KW+IE+ +     + +                IL    
Sbjct: 137 NLASTEETKLATRFNQNEIEFMKWAIEQFMISGETIVE-GPALETSIIVKEVNRILVAAT 195

Query: 192 GDEHYAGLKHFVSYRIGSGELMQTNEITQTRAEELLFELSERKWLYRSPEGKIGLDVRFL 251
           GD + A  + F ++ +GS  L Q  E+T T  E+LL  L E KW YR+ EGK G+D+R +
Sbjct: 196 GDSNLAKWRKFSTFTVGSTNLFQFQELTATDIEDLLLRLCELKWFYRTQEGKFGIDLRCI 255

Query: 252 IEMKDYLVENFDVPLCVHCNEVVLQGIIC--LEAREEH--------NYGLHVGCLEHYVK 301
            E+++YL   +++  C +C+++ +QG+ C     REE+        +   HV C +HY+ 
Sbjct: 256 AELEEYLTSMYNLNTCQNCHKLAIQGVRCGNESCREENEETGENSLSQIWHVDCFKHYIT 315

Query: 302 HVSDKCPGSDKTFQEAGAYAI 322
           HVS  C     +    G Y I
Sbjct: 316 HVSKNCDRCGSSLITEGVYVI 336


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,741,195
Number of Sequences: 60738
Number of extensions: 770103
Number of successful extensions: 1528
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1523
Number of HSP's gapped (non-prelim): 1
length of query: 323
length of database: 30,389,216
effective HSP length: 106
effective length of query: 217
effective length of database: 23,950,988
effective search space: 5197364396
effective search space used: 5197364396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)