ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2413 good T KOG0519 Signal transduction mechanisms Sensory transduction histidine kinase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2413 840647 842551 635
(635 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR006c [T] KOG0519 Sensory transduction histidine kinase 231 3e-60
SPBC887.10 [T] KOG0519 Sensory transduction histidine kinase 191 3e-48
SPAC1834.08 [T] KOG0519 Sensory transduction histidine kinase 65 3e-10
At5g10720 [T] KOG0519 Sensory transduction histidine kinase 61 5e-09
YIL147c [T] KOG0519 Sensory transduction histidine kinase 55 4e-07
At3g04280 [T] KOG0519 Sensory transduction histidine kinase 53 1e-06
YHR206w_2 [T] KOG0519 Sensory transduction histidine kinase 52 4e-06
>YLR006c [T] KOG0519 Sensory transduction histidine kinase
Length = 712
Score = 231 bits (589), Expect = 3e-60
Identities = 173/474 (36%), Positives = 233/474 (48%), Gaps = 119/474 (25%)
Query: 194 YKVIIEPDTPVMTVYRELYG--GLQKSEDALTVFYXXXXXXXXXXXEVLTPAELLDPIR- 250
YK+I EPD + +Y+EL+G G Q + L +F + + P ++L+ +
Sbjct: 244 YKIIFEPDELAINIYKELFGTMGSQPASQPLLIF------SNVNLRQDVPPLDILNVVDY 297
Query: 251 IFTKDAIGQEKEILLSDISQGT-EIDSVVERPDQRRPSLFGSFSSSRNNTG--------- 300
+ T + I Q+K + G +D + +Q G + + G
Sbjct: 298 VPTNEEISQQKTQPTDHGAVGVFHLDDHISPGEQGLKQTIGDKADLKGKDGNSSPQEFKL 357
Query: 301 ---------------------------ILLLPKGVSP------EDIEGSNDSPYEEANIS 327
ILLLPKG + + ++ S E I+
Sbjct: 358 ITDEEQLRRASQELKDEEKDAESPWQAILLLPKGYKGGVDFRNKPVAHTDSSFNNEDTIT 417
Query: 328 LDNIE--TSPPHPESYALTAQKPLTEEEVGISLTKTIS---------SPELPRPLSRRTT 376
+E T P ES +L E GI +T+ +S +P P S +T
Sbjct: 418 HSELEVNTGSPSQESGSLN--------EAGIGITQPMSEVQRRKEDVTPASPILTSSQTP 469
Query: 377 PSLDKQGNLP-----------------KYKVFPRINVLIVEDNAINQAILALFLRKNGIS 419
+ N P KVFP+INVLIVEDN INQAIL FLRK+ IS
Sbjct: 470 HYSNSLYNAPFAVSSPPDPLPNLFTTTSEKVFPKINVLIVEDNVINQAILGSFLRKHKIS 529
Query: 420 YKVAKDGVEAIEKWKEGDSHLILMDLQLPLLSGLEATKKIRELERINNIGNFSQKSVSKK 479
YK+AK+G EA+ WKEG HLI MDLQLP+LSG+EA K+IR+ E+ N IG QKS++
Sbjct: 530 YKLAKNGQEAVNIWKEGGLHLIFMDLQLPVLSGIEAAKQIRDFEKQNGIG--IQKSLN-- 585
Query: 480 PNLKKNANSKEEGGTTAAKTSDQQNEVEKSNQQNMVLDKSKFRSPVIIVALTASYSQIDR 539
N++S E GT+ K ++PVIIVALTAS SQ+D+
Sbjct: 586 -----NSHSNLEKGTS----------------------KRFSQAPVIIVALTASNSQMDK 618
Query: 540 TEALLAGCNDYLTKPVNLDWLSKKITEWGCMQALIDFDGWTEGQRRMTDDVLLR 593
+ALL+GCNDYLTKPVNL WLSKKITEWGCMQALIDFD W +G+ RMTD VL++
Sbjct: 619 RKALLSGCNDYLTKPVNLHWLSKKITEWGCMQALIDFDSWKQGESRMTDSVLVK 672
Score = 52.8 bits (125), Expect = 2e-06
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 27 RIWLQLDTPCDSFRGENPIEDTLYNQPTSVDIEVRDMIDDVKSKVLNKLSNTRWFRFKDN 86
++WL++D D NQP +V + D +DD+KS+ KLS+TRW DN
Sbjct: 9 KVWLRIDNSTDEV-----------NQPIAVQFDEIDTVDDLKSRFFQKLSSTRWREINDN 57
Query: 87 TNISLGFY 94
+I++G Y
Sbjct: 58 ASIAIGLY 65
>SPBC887.10 [T] KOG0519 Sensory transduction histidine kinase
Length = 522
Score = 191 bits (485), Expect = 3e-48
Identities = 105/190 (55%), Positives = 124/190 (65%), Gaps = 31/190 (16%)
Query: 390 VFPRINVLIVEDNAINQAILALFLRKNGISYKVAKDGVEAIEKWKEGDSHLILMDLQLPL 449
V P INVLIVEDN INQ IL F++K IS +VAKDG+EA+EKWK+ HLILMD+QLP
Sbjct: 358 VIPPINVLIVEDNIINQKILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDIQLPT 417
Query: 450 LSGLEATKKIRELERINNIGNFSQKSVSKKPNLKKNANSKEEGGTTAAKTSDQQNEVEKS 509
+SG+E T++IR LER+N IG + K P DQ NE
Sbjct: 418 MSGIEVTQEIRRLERLNAIGVGAPKLTQPIPE------------------KDQLNE---- 455
Query: 510 NQQNMVLDKSKFRSPVIIVALTASYSQIDRTEALLAGCNDYLTKPVNLDWLSKKITEWGC 569
+KF+SPVIIVALTAS DR EAL AGCND+LTKPV+L WL KKITEWGC
Sbjct: 456 ---------NKFQSPVIIVALTASSLMADRNEALAAGCNDFLTKPVSLVWLEKKITEWGC 506
Query: 570 MQALIDFDGW 579
MQALID++GW
Sbjct: 507 MQALIDWNGW 516
>SPAC1834.08 [T] KOG0519 Sensory transduction histidine kinase
Length = 1639
Score = 65.1 bits (157), Expect = 3e-10
Identities = 30/76 (39%), Positives = 51/76 (66%), Gaps = 3/76 (3%)
Query: 395 NVLIVEDNAINQAILALFLRKNGISYKVAKDGVEAIEKWKEGDSH---LILMDLQLPLLS 451
+VL+ EDN IN +++ +L + G+ +KV DG++ +E+WK + LILMDLQ+P++
Sbjct: 1507 SVLLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVEEWKREKPNFYSLILMDLQMPVMD 1566
Query: 452 GLEATKKIRELERINN 467
G +A +IR+ E N+
Sbjct: 1567 GYQACNEIRKYELEND 1582
>At5g10720 [T] KOG0519 Sensory transduction histidine kinase
Length = 950
Score = 61.2 bits (147), Expect = 5e-09
Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 54/342 (15%)
Query: 248 PIRIFTKDAIGQEKEILLSDISQGTEIDSVVERPDQRRPSLFGSFSSSRNNTGILLLPKG 307
P ++ D +++ Q +E D E Q +P L +S+ LP
Sbjct: 639 PYKVGRSDDYSDDQDEFSDMADQQSEPDDTAEGYFQFKPLLGSIYSNGGPGISNDFLPHK 698
Query: 308 V---SPEDI------EGSNDSPYEEANISLDN--------IETSPPH-PES---YALTAQ 346
V SP + + SN++ E + L+N +ETS H PES Y
Sbjct: 699 VMLTSPIKLINGFVADPSNNTGQSEM-LQLENGGYMDESKLETSSGHCPESAHQYENGNG 757
Query: 347 KPLTEEEVGISLTKTISSPELPRPLSRRTTPS-LDKQGNLPKYKVFPRINVLIVEDNAIN 405
+ ++E S ++ S S T S +++ + K + +L+VEDN IN
Sbjct: 758 RCFSKESESCSSSQASSEGGTLEMESELTVSSHREEEKAETEVKETSKPKILLVEDNKIN 817
Query: 406 QAILALFLRKNGISYKVAKDGVEAIEKWKEGDSHLILMDLQLPLLSGLEATKKIRELERI 465
+ +++ G + +A +GVEAI L+LMD+ +P+L GL+AT+ IR E
Sbjct: 818 IMVAKSMMKQLGHTMDIANNGVEAITAINSSSYDLVLMDVCMPVLDGLKATRLIRSYEET 877
Query: 466 NNIGNFSQKSVSKKPNLKKNANSKEEGGTTAAKTSDQQNEVEKSNQQNMVLDKSKFRSPV 525
N N+ E G + + ++Q + +N+ +
Sbjct: 878 G------------------NWNAAIEAGVDISTSENEQVCMRPTNR-------------L 906
Query: 526 IIVALTASYSQIDRTEALLAGCNDYLTKPVNLDWLSKKITEW 567
I+A+TA+ E G + +++KPV L L + + ++
Sbjct: 907 PIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQY 948
>YIL147c [T] KOG0519 Sensory transduction histidine kinase
Length = 1220
Score = 54.7 bits (130), Expect = 4e-07
Identities = 38/109 (34%), Positives = 60/109 (54%), Gaps = 11/109 (10%)
Query: 362 ISSPELPRPLSRRTTPSLDKQGNLPKYKVFPR----INVLIVEDNAINQAILALFLRKNG 417
+ S L RP + T + + N+P K + + +L+VEDN +NQ ++ L G
Sbjct: 1053 LGSVNLDRPFLQSTGTATSSR-NIPTVKDDDKNETSVKILVVEDNHVNQEVIKRMLNLEG 1111
Query: 418 I-SYKVAKDGVEAIEKWKEGDS-----HLILMDLQLPLLSGLEATKKIR 460
I + ++A DG EA +K KE S ++I MD+Q+P + GL +TK IR
Sbjct: 1112 IENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIR 1160
>At3g04280 [T] KOG0519 Sensory transduction histidine kinase
Length = 142
Score = 53.1 bits (126), Expect = 1e-06
Identities = 34/110 (30%), Positives = 62/110 (55%), Gaps = 5/110 (4%)
Query: 394 INVLIVEDNAINQAILALFLRKNGISYKVAKDGVEAIEKWKEGDS--HLILMDLQLPLLS 451
INVLIV+D+ +N+ + + ++ G + AK+G EA+ ++G++ LILMD ++P
Sbjct: 22 INVLIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEMPERD 81
Query: 452 GLEATKKIRELE---RINNIGNFSQKSVSKKPNLKKNANSKEEGGTTAAK 498
G+ TKK+RE++ I + + + + +K ++ N E T AK
Sbjct: 82 GVSTTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAK 131
>YHR206w_2 [T] KOG0519 Sensory transduction histidine kinase
Length = 244
Score = 51.6 bits (122), Expect = 4e-06
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 396 VLIVEDNAINQAILALFLRKNGISYKVAKDGVEAIEKWKEGDSHLILMDLQLPLLSGLEA 455
VL+VED+A++ + + FLRK G + +V DG+ AI ++ L+LMD+ +P L G A
Sbjct: 1 VLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYRYDLVLMDIVMPNLDGATA 60
Query: 456 TKKIRELE 463
T +R +
Sbjct: 61 TSIVRSFD 68
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,418,607
Number of Sequences: 60738
Number of extensions: 1646923
Number of successful extensions: 4163
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4147
Number of HSP's gapped (non-prelim): 14
length of query: 635
length of database: 30,389,216
effective HSP length: 113
effective length of query: 522
effective length of database: 23,525,822
effective search space: 12280479084
effective search space used: 12280479084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)