ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV2420    suspect: LH   R     KOG3089  General function prediction only                               Predicted DEAD-box-containing helicase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV2420 846224 845301 -308 
         (308 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR003c [R] KOG3089 Predicted DEAD-box-containing helicase            274   1e-73

>YLR003c [R] KOG3089 Predicted DEAD-box-containing helicase
          Length = 291

 Score =  274 bits (701), Expect = 1e-73
 Identities = 158/316 (50%), Positives = 206/316 (65%), Gaps = 33/316 (10%)

Query: 1   MVHADDLDDGLVYEVNDAQDDDV--VSDG-----ELVELDKDNDSNTADEVSENKRALDT 53
           M + DDLDDGL Y+  DA+ + +    DG     ++ +   + D +  D++   K   ++
Sbjct: 1   MSNPDDLDDGLAYDF-DAEHEVIFDAKDGSPPTKKVQKRSIEQDDDDVDDIDGKKEERNS 59

Query: 54  EDNGNTLSTEESEKPLSKRQKKLANSS-LHQKKLERMAYEKAQKENLPKASVDKIIEYLA 112
           ED+ N        +P+SKRQKKL   S L +KK E   Y  +Q++ LP +S +KIIEYL 
Sbjct: 60  EDDSN--------RPISKRQKKLQKKSKLIEKKKEESQYIVSQRKALPASSPEKIIEYLT 111

Query: 113 TSIRDKNPDLSALELDELYFKKQDFLSTEKYEKDRSLNNFQDFIHTFSKSPRSIILSQSN 172
           T IR+KNPDLS LEL+ELYFK+ DFLSTEK++ +R L+NF  FI  FS +P+ I+ S SN
Sbjct: 112 TLIREKNPDLSVLELEELYFKRNDFLSTEKFDAERRLSNFPAFIQKFSVAPKKIVFSMSN 171

Query: 173 IRVADVYRSVNGHQTAVKLFSKNKLKDDITKVEELLGXXXXXXXXXXXXXXXXXXXXXXX 232
           IRVADVYRS+NG +  VKLFSK+KLKDDI  VE LL                        
Sbjct: 172 IRVADVYRSLNGGKNCVKLFSKSKLKDDIATVERLL----------------TDSSKKSN 215

Query: 233 XXETVKYFISTPTRIQKIIESTDLFFQGKEKLDIFIDASYLDPKNNTIFTSDDSAVLYKV 292
             +   YFI+TPTR+QKIIE+TDL FQGKEKLDI +DASYLDPK+NTI + +++AVL +V
Sbjct: 216 KNKDSLYFIATPTRMQKIIEATDLLFQGKEKLDIILDASYLDPKDNTILSFENAAVLCQV 275

Query: 293 LKEFLKNKSSVKILLF 308
           LK FL  KSSVKILL+
Sbjct: 276 LKTFLNKKSSVKILLY 291


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.130    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,398,206
Number of Sequences: 60738
Number of extensions: 673843
Number of successful extensions: 4226
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4222
Number of HSP's gapped (non-prelim): 1
length of query: 308
length of database: 30,389,216
effective HSP length: 106
effective length of query: 202
effective length of database: 23,950,988
effective search space: 4838099576
effective search space used: 4838099576
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)