ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2469 suspect: LH U KOG4112 Intracellular trafficking, secretion, and vesicular transport Signal peptidase subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2469 862612 862884 91
(91 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
YJR010c-a [U] KOG4112 Signal peptidase subunit 53 6e-08
>YJR010c-a [U] KOG4112 Signal peptidase subunit
Length = 94
Score = 53.1 bits (126), Expect = 6e-08
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 2 EVLQDLGRQLVFPIDFESQSYTESISNKALYLITFFSFISGYLTESIKXXXXXXXXXXXX 61
E+LQD+ R+LVFPIDF SQ TE +L + + I G+ +S+K
Sbjct: 3 EILQDVQRKLVFPIDFPSQRKTEKFQQLSLMIGALVACILGFAQQSLKVLLTAYGISCVI 62
Query: 62 XXXXXXPPYSAYNKHRPQWA 81
P Y YNK + +WA
Sbjct: 63 TLICVLPAYPWYNKQKLRWA 82
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,217,075
Number of Sequences: 60738
Number of extensions: 93158
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 1
length of query: 91
length of database: 30,389,216
effective HSP length: 67
effective length of query: 24
effective length of database: 26,319,770
effective search space: 631674480
effective search space used: 631674480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)