ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2560 good K KOG3302 Transcription TATA-box binding protein (TBP), component of TFIID and TFIIIB
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2560 893972 893274 -233
(233 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER148w [K] KOG3302 TATA-box binding protein (TBP) component of ... 384 e-107
SPAC29E6.08 [K] KOG3302 TATA-box binding protein (TBP) component... 341 4e-94
At3g13445 [K] KOG3302 TATA-box binding protein (TBP) component o... 310 1e-84
At1g55520 [K] KOG3302 TATA-box binding protein (TBP) component o... 306 2e-83
7291324 [K] KOG3302 TATA-box binding protein (TBP) component of ... 301 4e-82
Hs4507379 [K] KOG3302 TATA-box binding protein (TBP) component o... 298 6e-81
ECU04g1440 [K] KOG3302 TATA-box binding protein (TBP) component ... 288 3e-78
CE01408 [K] KOG3302 TATA-box binding protein (TBP) component of ... 271 4e-73
7297339 [K] KOG3302 TATA-box binding protein (TBP) component of ... 222 4e-58
7290928_2 [K] KOG3302 TATA-box binding protein (TBP) component o... 132 5e-31
Hs4759234 [K] KOG3302 TATA-box binding protein (TBP) component o... 130 1e-30
CE27159 [K] KOG3302 TATA-box binding protein (TBP) component of ... 112 3e-25
>YER148w [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 240
Score = 384 bits (987), Expect = e-107
Identities = 201/242 (83%), Positives = 214/242 (88%), Gaps = 11/242 (4%)
Query: 1 MSEENRMKQFQEENKIVFDPSTRSVWETQEKQEHESLPGTDANAEDADKG---------S 51
M++E R+K+F+E NKIVFDP+TR VWE Q + + P T +E+ K S
Sbjct: 1 MADEERLKEFKEANKIVFDPNTRQVWENQNRDGTK--PATTFQSEEDIKRAAPESEKDTS 58
Query: 52 ATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 111
ATSGI+PTLQNIVATV L CRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFAS
Sbjct: 59 ATSGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 118
Query: 112 GKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFS 171
GKMVVTGAKSEDDSKLASRKYARIIQKIGF+AKFTDFKIQNIVGSCDVKFPIRLEGLAFS
Sbjct: 119 GKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFS 178
Query: 172 HGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFR 231
HGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFR
Sbjct: 179 HGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFR 238
Query: 232 KL 233
K+
Sbjct: 239 KM 240
>SPAC29E6.08 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 231
Score = 341 bits (875), Expect = 4e-94
Identities = 171/192 (89%), Positives = 180/192 (93%)
Query: 41 DANAEDADKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIR 100
D+ + K SGI+PTLQNIVATVNLDCRLDLKT+ALHARNAEYNPKRFAAVIMRIR
Sbjct: 39 DSGDAEVSKNEGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIR 98
Query: 101 EPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVK 160
EPK+TALIFASGKMVV G KSEDDSKLASRKYARIIQK+GF+AKFTDFKIQNIVGSCDVK
Sbjct: 99 EPKSTALIFASGKMVVLGGKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVK 158
Query: 161 FPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAF 220
FPIRLEGLA+SHGTFSSYEPELFPGLIYRMVKPK+VLLIFVSGKIVLTGAK REEIYQAF
Sbjct: 159 FPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAF 218
Query: 221 EAIYPVLSEFRK 232
EAIYPVLSEFRK
Sbjct: 219 EAIYPVLSEFRK 230
>At3g13445 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 200
Score = 310 bits (793), Expect = 1e-84
Identities = 155/186 (83%), Positives = 168/186 (89%)
Query: 48 DKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTAL 107
D SGI+PTLQNIV+TVNLDC+LDLK +AL ARNAEYNPKRFAAVIMRIREPKTTAL
Sbjct: 13 DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTAL 72
Query: 108 IFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEG 167
IFASGKMV TGAKSED SK+A+RKYARI+QK+GF AKF DFKIQNIVGSCDVKFPIRLEG
Sbjct: 73 IFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 132
Query: 168 LAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVL 227
LA+SH FSSYEPELFPGLIYRM PKIVLLIFVSGKIV+TGAK R+E Y+AFE IYPVL
Sbjct: 133 LAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVL 192
Query: 228 SEFRKL 233
SEFRK+
Sbjct: 193 SEFRKI 198
>At1g55520 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 200
Score = 306 bits (783), Expect = 2e-83
Identities = 157/195 (80%), Positives = 170/195 (86%), Gaps = 1/195 (0%)
Query: 39 GTDANAEDADKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMR 98
GT+ + + D SGI+PTLQNIV+TVNLDC+LDLK +AL ARNAEYNPKRFAAVIMR
Sbjct: 5 GTEGS-QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMR 63
Query: 99 IREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCD 158
IREPKTTALIFASGKMV TGAKSE SKLA+RKYARI+QK+GF AKF DFKIQNIVGSCD
Sbjct: 64 IREPKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCD 123
Query: 159 VKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQ 218
VKFPIRLEGLA+SH FSSYEPELFPGLIYRM PKIVLLIFVSGKIV+TGAK REE Y
Sbjct: 124 VKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYT 183
Query: 219 AFEAIYPVLSEFRKL 233
AFE IYPVL EFRK+
Sbjct: 184 AFENIYPVLREFRKV 198
>7291324 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 353
Score = 301 bits (772), Expect = 4e-82
Identities = 150/199 (75%), Positives = 173/199 (86%), Gaps = 1/199 (0%)
Query: 34 HESLPGTDANAEDADKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFA 93
H+++ G A GSA GI+P LQNIV+TVNL C+LDLK +ALHARNAEYNPKRFA
Sbjct: 154 HQTM-GPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFA 212
Query: 94 AVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNI 153
AVIMRIREP+TTALIF+SGKMV TGAKSEDDS+LA+RKYARIIQK+GF AKF DFKIQN+
Sbjct: 213 AVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNM 272
Query: 154 VGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQR 213
VGSCDVKFPIRLEGL +H FSSYEPELFPGLIYRMV+P+IVLLIFVSGK+VLTGAK R
Sbjct: 273 VGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVR 332
Query: 214 EEIYQAFEAIYPVLSEFRK 232
+EIY AF+ I+P+L +F+K
Sbjct: 333 QEIYDAFDKIFPILKKFKK 351
>Hs4507379 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 339
Score = 298 bits (762), Expect = 6e-81
Identities = 146/186 (78%), Positives = 166/186 (88%)
Query: 47 ADKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTA 106
A S +SGI+P LQNIV+TVNL C+LDLKT+AL ARNAEYNPKRFAAVIMRIREP+TTA
Sbjct: 152 ATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTA 211
Query: 107 LIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLE 166
LIF+SGKMV TGAKSE+ S+LA+RKYAR++QK+GF AKF DFKIQN+VGSCDVKFPIRLE
Sbjct: 212 LIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 271
Query: 167 GLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPV 226
GL +H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLTGAK R EIY+AFE IYP+
Sbjct: 272 GLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPI 331
Query: 227 LSEFRK 232
L FRK
Sbjct: 332 LKGFRK 337
>ECU04g1440 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 198
Score = 288 bits (738), Expect = 3e-78
Identities = 142/179 (79%), Positives = 161/179 (89%)
Query: 54 SGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 113
SGIIPTLQN+VATVNL C+LDLK +AL ARNAEYNPKRFAAVIMRIREPKTTALIFASGK
Sbjct: 19 SGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGK 78
Query: 114 MVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 173
MV+TGAKSE S++A+++YA+II K+GF+A F DFKIQNIV SCD+KF IRLEGLA++H
Sbjct: 79 MVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHS 138
Query: 174 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 232
+ SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAK R++IYQAF IYPVL + RK
Sbjct: 139 NYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 197
>CE01408 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 340
Score = 271 bits (694), Expect = 4e-73
Identities = 130/176 (73%), Positives = 157/176 (88%)
Query: 57 IPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVV 116
+P LQNIV+TVNL +LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMV
Sbjct: 165 MPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 224
Query: 117 TGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFS 176
TGAKSE+ S+LA+RKYARI+QK+GF AKFT+F +QN+VGSCDV+FPI+LEGL +H FS
Sbjct: 225 TGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFS 284
Query: 177 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 232
+YEPELFPGLIYRMVKP++VLLIFVSGK+V+TGAK + +I +AF IYP+L F+K
Sbjct: 285 TYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKRDIDEAFGQIYPILKGFKK 340
>7297339 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 224
Score = 222 bits (565), Expect = 4e-58
Identities = 105/173 (60%), Positives = 137/173 (78%)
Query: 60 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
LQNIVAT +++C LDLK + RN+EY+PKRF VIMR+ P+ TALIF +GK++ TGA
Sbjct: 51 LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGA 110
Query: 120 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 179
++E ++ + SRK+ARI+QK+GF KF ++K+QNIV + D++FPIRLE L HG FSSYE
Sbjct: 111 RNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYE 170
Query: 180 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 232
PE+FPGLIYRMVKP+IVLLIFV+GK+V TGAK R++I EAI P+L FRK
Sbjct: 171 PEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>7290928_2 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 184
Score = 132 bits (331), Expect = 5e-31
Identities = 67/175 (38%), Positives = 109/175 (62%), Gaps = 4/175 (2%)
Query: 60 LQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 119
+ N+V + ++ C L L+ +AL N EY + V M++R P TTA I++SG++ TGA
Sbjct: 11 INNVVCSFSVGCHLKLREIALQGSNVEYRREN-GMVTMKLRHPYTTASIWSSGRITCTGA 69
Query: 120 KSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYE 179
SE +K+A+R+YAR + K+GF +F +F+I N++G+C + + I++ + H +SYE
Sbjct: 70 TSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 129
Query: 180 PELFPGLIYRM--VKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 232
PEL PG+ Y+M PK L IF +G + +T A + A + IYP++ +FRK
Sbjct: 130 PELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 183
>Hs4759234 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 186
Score = 130 bits (328), Expect = 1e-30
Identities = 72/187 (38%), Positives = 110/187 (58%), Gaps = 5/187 (2%)
Query: 46 DADKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTT 105
DAD A +I N+V C L+L+ +AL N Y + V+M++R+P+ T
Sbjct: 2 DADSDVALDILIT---NVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRIT 57
Query: 106 ALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRL 165
A I++SGK++ TGA SE+++K +R+ AR +QK+GF FTDFK+ N++ C++ F IRL
Sbjct: 58 ATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRL 117
Query: 166 EGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYP 225
++ +SYEPEL P + YR+ + L IF +G I +TG + + A E IYP
Sbjct: 118 PEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVK-AVATAVEQIYP 176
Query: 226 VLSEFRK 232
+ E RK
Sbjct: 177 FVFESRK 183
>CE27159 [K] KOG3302 TATA-box binding protein (TBP) component of TFIID and
TFIIIB
Length = 505
Score = 112 bits (281), Expect = 3e-25
Identities = 61/207 (29%), Positives = 112/207 (53%), Gaps = 5/207 (2%)
Query: 31 KQEHESLPGTDANAEDADKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPK 90
K E +P +A + + I ++N+V L +DL+ +A++ N Y +
Sbjct: 238 KIEVPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYERE 297
Query: 91 RFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAK----FT 146
+ ++ + R P +++SGK+ + G +SE D K A+R AR +Q++ K
Sbjct: 298 K-GVMMKQKRSPGCYIKVYSSGKVYIVGCRSEADCKRAARSIARHVQRVMGKTKERVSIR 356
Query: 147 DFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIV 206
++++ N++ +C + F I++E +A + + S+YEPEL GL++R V PK L I +G I
Sbjct: 357 NYRVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRIHTTGSIT 416
Query: 207 LTGAKQREEIYQAFEAIYPVLSEFRKL 233
+TGA+ ++ + IYP++ EFR L
Sbjct: 417 VTGAQSEADVLEVLSKIYPIVLEFRCL 443
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,993,416
Number of Sequences: 60738
Number of extensions: 510339
Number of successful extensions: 1457
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1415
Number of HSP's gapped (non-prelim): 12
length of query: 233
length of database: 30,389,216
effective HSP length: 103
effective length of query: 130
effective length of database: 24,133,202
effective search space: 3137316260
effective search space used: 3137316260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)