ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2589 good A KOG1775 RNA processing and modification U6 snRNA-associated Sm-like protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2589 903455 903204 -84
(84 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER146w [A] KOG1775 U6 snRNA-associated Sm-like protein 101 2e-22
SPBC20F10.09 [A] KOG1775 U6 snRNA-associated Sm-like protein 87 4e-18
CE09757 [A] KOG1775 U6 snRNA-associated Sm-like protein 80 6e-16
7295386 [A] KOG1775 U6 snRNA-associated Sm-like protein 80 6e-16
Hs6912488 [A] KOG1775 U6 snRNA-associated Sm-like protein 78 2e-15
At5g48870 [A] KOG1775 U6 snRNA-associated Sm-like protein 73 6e-14
>YER146w [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 93
Score = 101 bits (252), Expect = 2e-22
Identities = 52/85 (61%), Positives = 67/85 (78%), Gaps = 7/85 (8%)
Query: 3 SVSEILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQE----- 57
S+ EILPLEVIDKTI Q+V I+L+ REF GTLVGFDD+VNV++E+AVE+L D E
Sbjct: 2 SLPEILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRN 61
Query: 58 --IKRFQGKMLLTGNNIAMLIPGGK 80
+ + G+MLL+GNNIA+L+PGGK
Sbjct: 62 EKVMQHHGRMLLSGNNIAILVPGGK 86
>SPBC20F10.09 [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 80
Score = 87.0 bits (214), Expect = 4e-18
Identities = 41/75 (54%), Positives = 53/75 (70%)
Query: 7 ILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRFQGKML 66
ILPLE+IDK IG + +++K REF GTLVGFDDYVN+V+++ EY + +ML
Sbjct: 5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEML 64
Query: 67 LTGNNIAMLIPGGKP 81
L GN + MLIPGGKP
Sbjct: 65 LNGNGMCMLIPGGKP 79
>CE09757 [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 91
Score = 79.7 bits (195), Expect = 6e-16
Identities = 38/76 (50%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
Query: 7 ILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRFQ--GK 64
+LPLE+IDK IG ++ +++K+ +E GTL GFDDYVN+V+E+ VEY + KR
Sbjct: 12 LLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDT 71
Query: 65 MLLTGNNIAMLIPGGK 80
+LL GN+I ML+PGG+
Sbjct: 72 ILLNGNHITMLVPGGE 87
>7295386 [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 91
Score = 79.7 bits (195), Expect = 6e-16
Identities = 36/83 (43%), Positives = 60/83 (71%), Gaps = 2/83 (2%)
Query: 2 SSVSEILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRF 61
S++S ++PLE++DK IG + I++K+ +E GTL+GFDD+VN+++++ EY + +R
Sbjct: 8 SNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRI 67
Query: 62 Q--GKMLLTGNNIAMLIPGGKPA 82
++LL GNNI ML+PGG+ A
Sbjct: 68 TKLDQILLNGNNITMLVPGGELA 90
>Hs6912488 [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 91
Score = 78.2 bits (191), Expect = 2e-15
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 5 SEILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRFQ-- 62
S++LPLE++DK IG + I++K +E GTL+GFDD+VN+V+E+ E+ E +R
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 63 GKMLLTGNNIAMLIPGGK 80
++LL GNNI ML+PGG+
Sbjct: 70 DQILLNGNNITMLVPGGE 87
>At5g48870 [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 88
Score = 73.2 bits (178), Expect = 6e-14
Identities = 36/79 (45%), Positives = 54/79 (67%), Gaps = 2/79 (2%)
Query: 5 SEILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRFQ-- 62
S++LP E+ID+ IG ++ +++K +E G L GFD YVN+V+E+ EY E +R
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 63 GKMLLTGNNIAMLIPGGKP 81
++LL GNNIA+L+PGG P
Sbjct: 66 DQILLNGNNIAILVPGGSP 84
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.141 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,857,109
Number of Sequences: 60738
Number of extensions: 174949
Number of successful extensions: 499
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 6
length of query: 84
length of database: 30,389,216
effective HSP length: 60
effective length of query: 24
effective length of database: 26,744,936
effective search space: 641878464
effective search space used: 641878464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)