ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2612 good L KOG0012 Replication, recombination and repair DNA damage inducible protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2612 912392 911151 -414
(414 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER143w [L] KOG0012 DNA damage inducible protein 367 e-101
SPAC56F8.07 [L] KOG0012 DNA damage inducible protein 207 3e-53
7293232 [L] KOG0012 DNA damage inducible protein 199 8e-51
CE23513 [L] KOG0012 DNA damage inducible protein 133 4e-31
>YER143w [L] KOG0012 DNA damage inducible protein
Length = 428
Score = 367 bits (941), Expect = e-101
Identities = 210/434 (48%), Positives = 283/434 (64%), Gaps = 26/434 (5%)
Query: 1 MNITVTYEHSDDVLGPFELSEDMSLIDLFALID----FKEESQIIFHNMKQLDTKNTNIT 56
M++T++ E + ++ GP E+SEDM+L DL AL+ F + +++NM LD+ T +
Sbjct: 1 MDLTISNELTGEIYGPIEVSEDMALTDLIALLQADCGFDKTKHDLYYNMDILDSNRTQ-S 59
Query: 57 LKEAGLQNHDMLLIKPKNPASSQAAFGQPQEIDLTDEQYIEQFRTFLLENPSMAQEMGL- 115
LKE GL+ D+LLI+ K S Q L+DE +IEQFR LL N + ++ L
Sbjct: 60 LKELGLKTDDLLLIRGKISNSIQT-----DAATLSDEAFIEQFRQELLNNQMLRSQLILQ 114
Query: 116 -PNLEHMINNKTQFHQLLGPVLLSRRGERSN---NPFGIPNSEYSRLMSNPDDPVNQARI 171
P L ++N+ F + LGP++L RR N NPFGIP EY+RLM+NPDDP N+ RI
Sbjct: 115 IPGLNDLVNDPLLFRERLGPLILQRRYGGYNTAMNPFGIPQDEYTRLMANPDDPDNKKRI 174
Query: 172 SELTNQHEIDEQLRYAMEYTPESFTQVSMLYIKLEINGHPVKAFVDSGAQQTIMSTKLAE 231
+EL +Q IDEQLR A+EYTPE FTQV MLYI +EIN +PVKAFVD+GAQ TIMST+LA+
Sbjct: 175 AELLDQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAK 234
Query: 232 RTGLTSLIDKRFSGIAQGVGTGKILGRIHTTQIKIHDVFLPCSFTVLDTPMEMLLGLDML 291
+TGL+ +IDKRF G A+GVGTGKI+GRIH Q+KI ++PCSFTVLDT +++L+GLDML
Sbjct: 235 KTGLSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFTVLDTDIDVLIGLDML 294
Query: 292 RRHQASIDLKNNVLRISDVETPFLPESEIPK---DSLHALTTPAADEVRKAALKRDSSS- 347
+RH A +DLK NVLRI++VET FL E+EIPK + L A T+ + + SS+
Sbjct: 295 KRHLACVDLKENVLRIAEVETSFLSEAEIPKSFQEGLPAPTSVTTSSDKPLTPTKTSSTL 354
Query: 348 --GKNAMTGDANKVKQPKIP-----SSTTNQTVPSFAESDIKKLVDLGFSRKEAINALNK 400
A+ A + P + T T +F E IK+L+DLGF R + AL +
Sbjct: 355 PPQPGAVPALAPRTGMGPTPTGRSTAGATTATGRTFPEQTIKQLMDLGFPRDAVVKALKQ 414
Query: 401 TGGNVDYAASLLFQ 414
T GN ++AASLLFQ
Sbjct: 415 TNGNAEFAASLLFQ 428
>SPAC56F8.07 [L] KOG0012 DNA damage inducible protein
Length = 507
Score = 207 bits (526), Expect = 3e-53
Identities = 125/277 (45%), Positives = 167/277 (60%), Gaps = 14/277 (5%)
Query: 150 IPNSEYSRLMSN--PDDPVN---QARISELTNQHEIDEQLRYAMEYTPESFTQVSMLYIK 204
IP+S YS M + DD + Q RI E Q+ + E ++ A+E PE F QV ML++
Sbjct: 230 IPSSTYSMGMPSFSEDDLFDVEVQRRIEEQIRQNAVTENMQSAIENHPEVFGQVYMLFVN 289
Query: 205 LEINGHPVKAFVDSGAQQTIMSTKLAERTGLTSLIDKRFSGIAQGVGTGKILGRIHTTQI 264
+EINGH VKAFVDSGAQ TI+S AE+ GLT L+D RF G+A+GVG KILG +H+ +
Sbjct: 290 VEINGHKVKAFVDSGAQATILSADCAEKCGLTRLLDTRFQGVAKGVGMAKILGCVHSAPL 349
Query: 265 KIHDVFLPCSFTVLD-TPMEMLLGLDMLRRHQASIDLKNNVLRISDVETPFLPESEIPKD 323
KI D++LPC FTV++ ++MLLGLDMLRR+QA IDL+NNVLRI E PFL ESEIPK
Sbjct: 350 KIGDLYLPCRFTVIEGRDVDMLLGLDMLRRYQACIDLENNVLRIHGKEIPFLGESEIPKL 409
Query: 324 SLHALTTPAADEVRKAALKRDSSSGKNAMTGDANKVKQPKIPSSTTNQTVPSFA------ 377
+ + A + + S+S N +G K+ P++ + PS
Sbjct: 410 LANVEPSANAHGLGIEPASKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDP 469
Query: 378 --ESDIKKLVDLGFSRKEAINALNKTGGNVDYAASLL 412
S I +LV +GF EA AL+ G++D AAS L
Sbjct: 470 GLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 506
>7293232 [L] KOG0012 DNA damage inducible protein
Length = 458
Score = 199 bits (505), Expect = 8e-51
Identities = 159/467 (34%), Positives = 232/467 (49%), Gaps = 77/467 (16%)
Query: 1 MNITVTYEHSDDVLGPFELSEDMSLIDLFALIDFK---EESQI-IFHNMKQLDTKNTNIT 56
M ITVT SDD + ++++D+ L +L AL + E SQI + N ++L + T
Sbjct: 1 MKITVTT--SDDKVFCLDVAQDLELENLKALCAMEIGAEVSQIAVIFNGRELSSDKQ--T 56
Query: 57 LKEAGLQNHDMLLIKPK---------NPASSQAAFG------------------------ 83
L++ G+ + D ++++ + NPA S F
Sbjct: 57 LQQCGVGDGDFIMLERRRSANRPVGGNPAISTLDFSNIAVPGTSSGGSPPSRRVQQQGVQ 116
Query: 84 QPQEIDLTDEQYIEQFRTFLLENPSMAQEMGL-------------PNLEHMINN--KTQF 128
QPQ +LTD ++F ++P ++M L P+L I++ K +F
Sbjct: 117 QPQFNNLTDIPTTDEFNVNFDDDPETVRQMFLSSPETLSLLRQYNPSLAEAIDSGDKEKF 176
Query: 129 HQLLGPVLLSRRGERSNNPFGIPNSEYSRLMSNPDDPVNQARISELTNQHEIDEQLRYAM 188
+LL + R+ + L ++P D Q I+E Q I + + A+
Sbjct: 177 ARLLREHITERKRRNEHR--------MRMLNADPFDEETQRLIAEEIKQKNIQDNMAAAI 228
Query: 189 EYTPESFTQVSMLYIKLEINGHPVKAFVDSGAQQTIMSTKLAERTGLTSLIDKRFSGIAQ 248
EY PE F V+MLYI ++NG PVKAFVDSGAQ TIMS AER + LID R++G+A+
Sbjct: 229 EYNPEIFGTVTMLYINCKVNGIPVKAFVDSGAQTTIMSKDCAERCHVNRLIDTRWNGVAK 288
Query: 249 GVGTGKILGRIHTTQIKIHDVFLPCSFTVL-DTPMEMLLGLDMLRRHQASIDLKNNVLRI 307
GVGT ILGRIH Q++I + L SFTVL PM+MLLGLDML+RHQ IDL+ N+L I
Sbjct: 289 GVGTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLDMLKRHQCLIDLQRNLLII 348
Query: 308 --SDVETPFLPESEIPKDSLHALTTPAADEVRKAALKRDSSSGKNAMTGDANKVKQPKIP 365
+ TPFLPESE+P + LT + D + + A+ K G P
Sbjct: 349 GTTGTTTPFLPESELPVSA--RLTGNSEDSMEQEAISNAIEQSKRESGGAGGG------P 400
Query: 366 SSTTNQTVPSFAESDIKKLVDLGFSRKEAINALNKTGGNVDYAASLL 412
++ + Q F E D+ L+ LG+ R + + L GGN A S+L
Sbjct: 401 NTISPQ--ERFTEQDVTDLMALGYPRSDVLTVLRLCGGNKQAARSVL 445
>CE23513 [L] KOG0012 DNA damage inducible protein
Length = 389
Score = 133 bits (335), Expect = 4e-31
Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 3/177 (1%)
Query: 158 LMSNPDDPVNQARISELTNQHEIDEQLRYAMEYTPESFTQVSMLYIKLEINGHPVKAFVD 217
+ +NP+ + + N+ IDEQ ++M + PE V+MLYI L ING PVKAF+D
Sbjct: 202 IKNNPNSAEAKMFLEAKRNKELIDEQYLHSMTHHPEDMIAVTMLYINLTINGVPVKAFID 261
Query: 218 SGAQQTIMSTKLAERTGLTSLIDKRFSGIAQGV-GTGKILGRIHTTQIKIHDVFLPCSFT 276
SGAQ++IMS AER GL LID+RF +A+GV GT KI G+IH +K+ D C F
Sbjct: 262 SGAQKSIMSMACAERCGLNGLIDRRFQSMARGVGGTEKIEGKIHLCDVKVEDAHFSCPFE 321
Query: 277 VL-DTPMEMLLGLDMLRRHQASIDLKNNVLRISD-VETPFLPESEIPKDSLHALTTP 331
V+ M++L+GL++LR+H I+LK + L + TPFL +EI + P
Sbjct: 322 VMARREMDLLIGLNVLRKHGCCINLKTSRLEFGNGTTTPFLQSNEIDSHLKEIMALP 378
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,158,926
Number of Sequences: 60738
Number of extensions: 1049245
Number of successful extensions: 3265
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3247
Number of HSP's gapped (non-prelim): 5
length of query: 414
length of database: 30,389,216
effective HSP length: 109
effective length of query: 305
effective length of database: 23,768,774
effective search space: 7249476070
effective search space used: 7249476070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)