ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV2743    suspect: LH   R     KOG4197  General function prediction only                               FOG: PPR repeat

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV2743 951335  953893 853  
         (853 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77360 [R] KOG4197 FOG: PPR repeat                                  51   7e-06

>At1g77360 [R] KOG4197 FOG: PPR repeat
          Length = 481

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 305 YDMQPNRKNYTTVISFYTKMEHYKKAWQLFDSLKFLSLEHKPDTKVYNLMLEVCQKEKNY 364
           YD+ PN   +  ++S   K ++ +KA ++F++++       PD+K Y+++LE   KE N 
Sbjct: 161 YDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRD---RFTPDSKTYSILLEGWGKEPNL 217

Query: 365 ARSLDIFQEMDDLNVTKDLKTY 386
            ++ ++F+EM D     D+ TY
Sbjct: 218 PKAREVFREMIDAGCHPDIVTY 239


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,472,402
Number of Sequences: 60738
Number of extensions: 1996791
Number of successful extensions: 7038
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7033
Number of HSP's gapped (non-prelim): 4
length of query: 853
length of database: 30,389,216
effective HSP length: 115
effective length of query: 738
effective length of database: 23,404,346
effective search space: 17272407348
effective search space used: 17272407348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)