ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2763 suspect: Pn T KOG4603 Signal transduction mechanisms TBP-1 interacting protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2763 962589 962032 -186
(186 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
Hs7706577 [T] KOG4603 TBP-1 interacting protein 50 2e-06
Hs7019423 [T] KOG4603 TBP-1 interacting protein 49 3e-06
At1g13330 [T] KOG4603 TBP-1 interacting protein 45 6e-05
ECU01g0960 [T] KOG4603 TBP-1 interacting protein 33 0.17
SPCC162.08c [S] KOG4674 Uncharacterized conserved coiled-coil pr... 33 0.29
7296219 [T] KOG4637 Adaptor for phosphoinositide 3-kinase 32 0.38
YKR095w [S] KOG4674 Uncharacterized conserved coiled-coil protein 32 0.65
CE09349 [Z] KOG0161 Myosin class II heavy chain 32 0.65
Hs4507835 [F] KOG1377 Uridine 5'- monophosphate synthase/orotate... 31 0.86
7293373 [Z] KOG0517 Beta-spectrin 31 0.86
7291892 [Z] KOG0161 Myosin class II heavy chain 31 0.86
YJL112w [R] KOG4155 FOG: WD40 repeat 31 1.1
Hs22054327 [U] KOG1846 Uncharacterized conserved protein contain... 31 1.1
At4g38200 [U] KOG0929 Guanine nucleotide exchange factor 31 1.1
At3g15120 [O] KOG0732 AAA+-type ATPase containing the bromodomain 31 1.1
YOR386w [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome 30 1.5
Hs22045440 [T] KOG0612 Rho-associated coiled-coil containing pro... 30 1.5
Hs14729747 [Z] KOG1003 Actin filament-coating protein tropomyosin 30 1.5
At3g54170 [A] KOG2991 Splicing regulator 30 1.5
7298527 [B] KOG2416 Acinus (induces apoptotic chromatin condensa... 30 1.5
SPBC3D6.10 [L] KOG1294 Apurinic/apyrimidinic endonuclease and re... 30 1.9
SPBC1703.05 [TR] KOG2268 Serine/threonine protein kinase 30 1.9
CE11382 [P] KOG1966 Sodium/hydrogen exchanger protein 30 1.9
SPCC16A11.04 [ZUD] KOG2101 Intermediate filament-like protein so... 30 2.5
At1g04600 [Z] KOG0160 Myosin class V heavy chain 29 3.3
YIL138c [Z] KOG1003 Actin filament-coating protein tropomyosin 29 4.2
SPBC29A3.15c [J] KOG3928 Mitochondrial ribosome small subunit co... 29 4.2
SPBC11C11.03 [D] KOG0995 Centromere-associated protein HEC1 29 4.2
Hs20537253 [U] KOG4809 Rab6 GTPase-interacting protein involved ... 29 4.2
Hs7705433 [JK] KOG3677 RNA polymerase I-associated factor - PAF67 28 5.5
CE27278 [TZ] KOG1923 Rac1 GTPase effector FRL 28 5.5
CE17780 [PT] KOG0499 Cyclic nucleotide-gated cation channel CNCG4 28 5.5
At5g48120 [LK] KOG1967 DNA repair/transcription protein Mms19 28 5.5
7294088 [U] KOG3202 SNARE protein TLG1/Syntaxin 6 28 5.5
YLR383w [L] KOG0250 DNA repair protein RAD18 (SMC family protein) 28 7.2
YDL116w [YU] KOG1964 Nuclear pore complex rNup107 component (sc ... 28 7.2
YDL058w [U] KOG0946 ER-Golgi vesicle-tethering protein p115 28 7.2
Hs4885231 [T] KOG0194 Protein tyrosine kinase 28 7.2
Hs4504511 [O] KOG0712 Molecular chaperone (DnaJ superfamily) 28 7.2
Hs20542063 [Z] KOG0161 Myosin class II heavy chain 28 7.2
CE10836 [U] KOG2148 Exocyst protein Sec3 28 7.2
At4g25940 [TU] KOG0251 Clathrin assembly protein AP180 and relat... 28 7.2
7298982 [ODR] KOG4151 Myosin assembly protein/sexual cycle prote... 28 7.2
SPCC306.04c [BK] KOG1080 Histone H3 (Lys4) methyltransferase com... 28 9.5
Hs7706751 [Z] KOG1374 Gamma tubulin 28 9.5
ECU11g1370 [K] KOG1831 Negative regulator of transcription 28 9.5
CE27421 [R] KOG2133 Transcriptional corepressor Atrophin-1/DRPLA 28 9.5
At5g33300 [Z] KOG0244 Kinesin-like protein 28 9.5
7301732 [A] KOG1135 mRNA cleavage and polyadenylation factor II ... 28 9.5
>Hs7706577 [T] KOG4603 TBP-1 interacting protein
Length = 217
Score = 49.7 bits (117), Expect = 2e-06
Identities = 34/125 (27%), Positives = 60/125 (47%), Gaps = 8/125 (6%)
Query: 1 MILNYLNENYKPFAINDIIQNLH--NAVSKANAVKALEVLVEEKKINCKQFGKISIYVRN 58
++L YL E +P++ D+ NL + + KA VK LE L ++ KI K +GK IY +
Sbjct: 15 ILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFAD 74
Query: 59 EIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHK 118
+ Q + D+ +Q L+ + + A+ Q+ + AE + + K
Sbjct: 75 QDQFDMVSDA------DLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQK 128
Query: 119 KIEEL 123
+I+EL
Sbjct: 129 EIQEL 133
>Hs7019423 [T] KOG4603 TBP-1 interacting protein
Length = 203
Score = 49.3 bits (116), Expect = 3e-06
Identities = 34/125 (27%), Positives = 60/125 (47%), Gaps = 8/125 (6%)
Query: 1 MILNYLNENYKPFAINDIIQNLH--NAVSKANAVKALEVLVEEKKINCKQFGKISIYVRN 58
++L YL E +P++ D+ NL + + KA VK LE L ++ KI K +GK IY +
Sbjct: 14 ILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFAD 73
Query: 59 EIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHK 118
+ Q + D+ +Q L+ + + A+ Q+ + AE + + K
Sbjct: 74 QDQFDMVSDA------DLQVLDGKIVALTAKVQSLQQTCRYMEAELKELSSALTTPEMQK 127
Query: 119 KIEEL 123
+I+EL
Sbjct: 128 EIQEL 132
>At1g13330 [T] KOG4603 TBP-1 interacting protein
Length = 226
Score = 45.1 bits (105), Expect = 6e-05
Identities = 38/143 (26%), Positives = 68/143 (46%), Gaps = 14/143 (9%)
Query: 1 MILNYLNENYKPFAINDIIQNLHNAVSKANAV-KALEVLVEEKKINCKQFGKISIYVRNE 59
++LN++NE KP + L K AV KAL+ L + KI K++GK IY+ +
Sbjct: 11 IVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEYGKQKIYIARQ 70
Query: 60 IQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAE----PSNIELVEIID- 114
Q E E + ++ E+ AK+ + Q + + +E SN+ L EI +
Sbjct: 71 DQFEIPNS------EELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEEIQEK 124
Query: 115 --QAHKKIEELDNNVKYLTDSPT 135
+ K+++E++ + L + T
Sbjct: 125 DAKLRKEVKEMEEKLVKLREGIT 147
>ECU01g0960 [T] KOG4603 TBP-1 interacting protein
Length = 197
Score = 33.5 bits (75), Expect = 0.17
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 11 KPFAINDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSK- 69
+P + ++++ + + L+ L E ++ K +GK IY+ N+ D+K
Sbjct: 21 RPTSKSEVVAYFKGEIGGTAIQEILDCLEESGRLITKTYGKSKIYLVNQDLFRNEEDTKL 80
Query: 70 DFSFEGIQE----LNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEELDN 125
D + +E L +E + V AE + ++ + S L E++ K+IE +
Sbjct: 81 DMEIQRYEEKKRALADEASSVDAEIRVLDKMLSIEQLQESINSLDEVVRNNSKRIESFKS 140
Query: 126 NVKYLT 131
+ +T
Sbjct: 141 GRREIT 146
>SPCC162.08c [S] KOG4674 Uncharacterized conserved coiled-coil protein
Length = 1837
Score = 32.7 bits (73), Expect = 0.29
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 39 VEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTA 98
+EE K NC+ K + E +L+E D + + LNEE + E + +TK
Sbjct: 1354 LEELKKNCEALEKEKQEL--ETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNT 1411
Query: 99 LLMA----EPSNIELVEIIDQAHKKIEELDNNVKYLTDSPTDFASNNIIKCLQDS 149
L A + N++ + AH K E + N + + + + A I+ L+DS
Sbjct: 1412 RLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDS 1466
Score = 27.7 bits (60), Expect = 9.5
Identities = 26/93 (27%), Positives = 41/93 (43%), Gaps = 14/93 (15%)
Query: 51 KISIYVRNEIQLEENRDSKDFS-----FEGIQELNEEYAKVL------AERQAWSTKTAL 99
KI+ YV + +E + S F I+EL ++ +L A+R K L
Sbjct: 533 KINSYVEKSLTEDETDTDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDL 592
Query: 100 LMAEPSNIELV---EIIDQAHKKIEELDNNVKY 129
AE L+ E IDQ K +EE+ + ++Y
Sbjct: 593 DGAEIQEETLIKANETIDQLTKMLEEVSDQLRY 625
>7296219 [T] KOG4637 Adaptor for phosphoinositide 3-kinase
Length = 496
Score = 32.3 bits (72), Expect = 0.38
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 18 IIQNLH-NAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEEN 65
++QNL N +K N+ A+ ++EKK++ FG RN+I+L E+
Sbjct: 144 LLQNLEQNLENKRNSFNAIREELQEKKLHQSVFGNTEKIFRNQIKLNES 192
>YKR095w [S] KOG4674 Uncharacterized conserved coiled-coil protein
Length = 1875
Score = 31.6 bits (70), Expect = 0.65
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 2 ILNYLNENYKPFAI----NDIIQNLHNAVSKANAVKALEVLVEEKKINCKQ---FGKISI 54
I N LN F + ND+++ +N +SK+ K LE+ +N ++ ++S+
Sbjct: 239 IRNELNRLRNDFQMERTNNDVLKQKNNELSKSLQEKLLEIKGLSDSLNSEKQEFSAEMSL 298
Query: 55 YVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLAE-------------RQAWSTKTALLM 101
R LE ++ I+ELN AKV+A+ ++ TK L
Sbjct: 299 KQRLVDLLESQLNAVKEELNSIRELNT--AKVIADDSKKQTPENEDLLKELQLTKEKLAQ 356
Query: 102 AEPSNIELVEIIDQAHKKIEELDNNVKYLTDSPTDFASNNIIK 144
E + L I D+A +E + N+ + S F +IK
Sbjct: 357 CEKECLRLSSITDEA----DEDNENLSAKSSSDFIFLKKQLIK 395
Score = 29.6 bits (65), Expect = 2.5
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Query: 15 INDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFE 74
IN II+ K K E VEE+ + +Q G+I + +R +++ + K+ E
Sbjct: 1540 INKIIER-----KKEELEKEFEEKVEERIKSMEQSGEIDVVLRKQLEAKVQEKQKELENE 1594
Query: 75 GIQELNEEYAKV 86
++L EE V
Sbjct: 1595 YNKKLQEELKDV 1606
>CE09349 [Z] KOG0161 Myosin class II heavy chain
Length = 1963
Score = 31.6 bits (70), Expect = 0.65
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 19 IQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQ--LEENRDSKDFSFEGI 76
I L A+ AN+ A + + + ++ + N + LE+ + D +
Sbjct: 1406 INELQEALDAANSKNASLEKTKSRLVGDLDDAQVDVERANGVASALEKKQKGFDKIIDEW 1465
Query: 77 QELNEEYAKVL--AERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEELDNNVKYLTD 132
++ ++ A L A+R +T T L A+ + EL E+++ ++ + L +K LTD
Sbjct: 1466 RKKTDDLAAELDGAQRDLRNTSTDLFKAKNAQEELAEVVEGLRRENKSLSQEIKDLTD 1523
>Hs4507835 [F] KOG1377 Uridine 5'- monophosphate synthase/orotate
phosphoribosyltransferase
Length = 480
Score = 31.2 bits (69), Expect = 0.86
Identities = 27/116 (23%), Positives = 49/116 (41%), Gaps = 12/116 (10%)
Query: 33 KALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDS---------KDFSFEGIQELNEEY 83
K LE+L ++KK++ + G++ +++ + + N + K+ SF EL +
Sbjct: 178 KMLEILEQQKKVDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIH 237
Query: 84 ---AKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEELDNNVKYLTDSPTD 136
+K+L Q T L EL+++ D I L +V L D D
Sbjct: 238 PVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLD 293
>7293373 [Z] KOG0517 Beta-spectrin
Length = 2291
Score = 31.2 bits (69), Expect = 0.86
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 57 RNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQA-----WSTKTALLMAEPSNIELVE 111
R+ ++ S + I++ + E AK++ ER A W T +L S +E
Sbjct: 1000 RDLAAIQAKLSSLEREANSIEDEHPEEAKIIRERIAQIELIWEQLTQMLKERDSKLEEA- 1058
Query: 112 IIDQAHKKIEELDNNVKYLTDSPTDFASNN 141
H+ + +LD+ +LT + TD AS +
Sbjct: 1059 --GDLHRFLRDLDHFQTWLTKTQTDVASED 1086
>7291892 [Z] KOG0161 Myosin class II heavy chain
Length = 2056
Score = 31.2 bits (69), Expect = 0.86
Identities = 37/138 (26%), Positives = 64/138 (45%), Gaps = 19/138 (13%)
Query: 17 DIIQNLHNAVSKANA-VKALEVLVEEKKINCKQFGKISIYVRNE-----IQLEENR---- 66
D+ + L + N ++ALE V+E + K +++E I+LE R
Sbjct: 1468 DLAKELEEGKKRLNKDIEALERQVKELIAQNDRLDKSKKKIQSELEDATIELEAQRTKVL 1527
Query: 67 --DSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEI---IDQAHKKIE 121
+ K +F+ I L EE K ++E+ A TA A +++ + +D+A KIE
Sbjct: 1528 ELEKKQKNFDKI--LAEE--KAISEQIAQERDTAEREAREKETKVLSVSRELDEAFDKIE 1583
Query: 122 ELDNNVKYLTDSPTDFAS 139
+L+N K L + D A+
Sbjct: 1584 DLENKRKTLQNELDDLAN 1601
>YJL112w [R] KOG4155 FOG: WD40 repeat
Length = 714
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/96 (23%), Positives = 46/96 (46%), Gaps = 9/96 (9%)
Query: 6 LNENYKPFAINDIIQNLHNAV--------SKANAVKALEVLVEE-KKINCKQFGKISIYV 56
++ +Y P A+ Q L N++ S + ++ +EV VE ++ K GKI+
Sbjct: 217 ISSSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIE 276
Query: 57 RNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQA 92
+N++ LE+N D + ++E E + ++ A
Sbjct: 277 QNQLLLEDNLKQIDDRLDFLEEYGLEVIEANSDENA 312
>Hs22054327 [U] KOG1846 Uncharacterized conserved protein contains Sec7 domain
Length = 1839
Score = 30.8 bits (68), Expect = 1.1
Identities = 26/95 (27%), Positives = 43/95 (44%), Gaps = 10/95 (10%)
Query: 37 VLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLA----ERQA 92
VL ++ I +Q K+ E + DS +++ EE A+V E++
Sbjct: 1487 VLTNQETITAEQVKKVLFE-----DDERSTDSSQQCSSEDEDIFEETAQVSPPRGKEKRQ 1541
Query: 93 WSTKTALLMAEP-SNIELVEIIDQAHKKIEELDNN 126
W + LL +P SN + V ++ + HK EL NN
Sbjct: 1542 WRARMPLLSVQPVSNADWVWLVKRLHKLCMELCNN 1576
>At4g38200 [U] KOG0929 Guanine nucleotide exchange factor
Length = 1698
Score = 30.8 bits (68), Expect = 1.1
Identities = 21/89 (23%), Positives = 41/89 (45%), Gaps = 2/89 (2%)
Query: 4 NYLNENYKPFAINDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLE 63
N+ NE +PF I ++Q +A + V+ + +V + N K K V +
Sbjct: 1107 NFQNEFLRPFVI--VMQKSSSAEIRELIVRCISQMVLSRVSNVKSGWKSVFKVFTTAAAD 1164
Query: 64 ENRDSKDFSFEGIQELNEEYAKVLAERQA 92
E ++ +FE ++++ EY + E +A
Sbjct: 1165 ERKNIVLLAFETMEKIVREYFSYITETEA 1193
>At3g15120 [O] KOG0732 AAA+-type ATPase containing the bromodomain
Length = 1954
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 57 RNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALL-MAEPSNIELVEIIDQ 115
R E + E+ DS D + E E + AE+ T+ + M +N+ + + ++
Sbjct: 247 RTETESEDGTDSTDNEIDDSDEEGESETQCSAEKTGSETEANVEEMRADTNVTMEAVQNE 306
Query: 116 AHKKIEELDNNVK 128
+ ++EEL+N ++
Sbjct: 307 SRNQMEELENEIE 319
>YOR386w [LT] KOG0133 Deoxyribodipyrimidine photolyase/cryptochrome
Length = 565
Score = 30.4 bits (67), Expect = 1.5
Identities = 16/60 (26%), Positives = 32/60 (52%)
Query: 6 LNENYKPFAINDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEEN 65
LN+ Y P I N N S+A ++ +E L +++K + + + + RN+++L +N
Sbjct: 31 LNKKYYPRPITRTGANQFNNKSRAKPMEIVEKLQKKQKTSFENVSTVMHWFRNDLRLYDN 90
>Hs22045440 [T] KOG0612 Rho-associated coiled-coil containing protein kinase
Length = 636
Score = 30.4 bits (67), Expect = 1.5
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 47 KQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSN 106
++F K+ + R E+Q + D Q + EE KV A T+ L +E N
Sbjct: 481 RRFAKLDMSARLELQ-----SALDAEIRAKQAIQEELNKVKASNII--TECKLKDSEKKN 533
Query: 107 IELVEIIDQAHKKIEEL 123
+EL+ I+Q K EEL
Sbjct: 534 LELLSEIEQLIKDTEEL 550
>Hs14729747 [Z] KOG1003 Actin filament-coating protein tropomyosin
Length = 158
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 64 ENRDSKDFSFEGIQELNEEYAKVLAE---RQAWSTKTALLMAEPSNIELVEIIDQAHKKI 120
ENR KD IQEL + AK +AE R+ W L+ E E ++ + K
Sbjct: 5 ENRAMKDEEKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELERAEERVEVSELKC 64
Query: 121 EELDNNVKYLTDS 133
+L+ +K +T++
Sbjct: 65 GDLEEELKNVTNN 77
>At3g54170 [A] KOG2991 Splicing regulator
Length = 330
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/53 (33%), Positives = 26/53 (48%)
Query: 76 IQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEELDNNVK 128
+QE NEE AE + L M + N EL + +K +EEL N+V+
Sbjct: 222 LQEENEEIGHQAAEGKIHELAIKLAMQKSQNAELRSQFEGLYKHMEELTNDVE 274
>7298527 [B] KOG2416 Acinus (induces apoptotic chromatin condensation)
Length = 739
Score = 30.4 bits (67), Expect = 1.5
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 57 RNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQA 116
++E L+ D D E + E +EE A AER+ + + E E ++
Sbjct: 201 KDEEHLKTTSDVLDIQTEEVDERDEE-ASAPAERRETKKRHKEQIKEQQPAE-----EEE 254
Query: 117 HKKI-EELDNNVKYLTDSPTDFASNNIIKCLQDS 149
HK+ +++D N + + D P D +++ CL S
Sbjct: 255 HKENHKQIDENPEQIHDEPADLSNDKHDPCLNSS 288
>SPBC3D6.10 [L] KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes
Length = 523
Score = 30.0 bits (66), Expect = 1.9
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 26 VSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNE 81
VS+AN+V ++ EK+ +Q +S + + + + EE ++D S E + NE
Sbjct: 374 VSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDNNNE 429
>SPBC1703.05 [TR] KOG2268 Serine/threonine protein kinase
Length = 336
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 2 ILNYLNENYKPFAINDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQ 61
I+ Y +NY+ + N + +SK L++++E N KQ ++ Y + E +
Sbjct: 261 IVQYFEKNYQ---YKGDVPNFED-ISKMEKENNLDIMIEASGFNKKQSKELEKYRQEEEK 316
Query: 62 LEENRDSKDFSFEGIQELNE 81
+EN D ++E +E E
Sbjct: 317 RKENGDDLSDNYEEEEEEKE 336
>CE11382 [P] KOG1966 Sodium/hydrogen exchanger protein
Length = 634
Score = 30.0 bits (66), Expect = 1.9
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 3/91 (3%)
Query: 43 KINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMA 102
K N KQ K + + + ++E D+K + G + N + + L E T TA+
Sbjct: 517 KNNMKQMDKTKLVRKYKHLVDE--DAKKIANGGDLKSNLAFTRALIEHTRSRTNTAITSD 574
Query: 103 EPSNIELVEIIDQAHK-KIEELDNNVKYLTD 132
I+ V + + H + + +NNV+Y +D
Sbjct: 575 SNGKIDFVTHMKEHHGITVYDHENNVEYTSD 605
>SPCC16A11.04 [ZUD] KOG2101 Intermediate filament-like protein sorting nexins and
related proteins containing PX (PhoX) domain(s)
Length = 1010
Score = 29.6 bits (65), Expect = 2.5
Identities = 21/89 (23%), Positives = 35/89 (38%), Gaps = 15/89 (16%)
Query: 35 LEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWS 94
L + K IN I + V + I ++N D + +S
Sbjct: 566 LSISSSSKSINSSPSPSIQLSVSSSISRDKNLSPLDLELDD---------------PTYS 610
Query: 95 TKTALLMAEPSNIELVEIIDQAHKKIEEL 123
+ +L A P +++L E ID+ + IEEL
Sbjct: 611 DEEEVLFAPPGDLQLSESIDELNNNIEEL 639
>At1g04600 [Z] KOG0160 Myosin class V heavy chain
Length = 1730
Score = 29.3 bits (64), Expect = 3.3
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 27 SKANAVKALEVLVEEKKINCKQFGKISIYVRNEI-----QLEENRDSKDFSFEGIQELNE 81
+K+ + L+ +++ ++ ++ K + + N++ QL+E+ S + + E
Sbjct: 967 TKSKEISDLQSALQDMQLEIEELSK-GLEMTNDLAAENEQLKESVSSLQNKIDESERKYE 1025
Query: 82 EYAKVLAERQAWST----KTALLMAEPSNIELVEIIDQAHKKIEELD 124
E +K+ ER ++A++ E N +L ++ +KI+ELD
Sbjct: 1026 EISKISEERIKDEVPVIDQSAIIKLETENQKLKALVSSMEEKIDELD 1072
>YIL138c [Z] KOG1003 Actin filament-coating protein tropomyosin
Length = 161
Score = 28.9 bits (63), Expect = 4.2
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 7 NENYKPFAINDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENR 66
NENY D+ Q L + S+A +A++ L +E +N +Q G R + LEE R
Sbjct: 81 NENYTK-KNQDLEQQLED--SEAKLKEAMDKL-KEADLNSEQMG------RRIVALEEER 130
Query: 67 DSKDFSFEGIQELNEEYAKVLAE 89
D + E Q EE K L E
Sbjct: 131 DEWEKKCEEFQSKYEEAQKELDE 153
>SPBC29A3.15c [J] KOG3928 Mitochondrial ribosome small subunit component mediator
of apoptosis DAP3
Length = 476
Score = 28.9 bits (63), Expect = 4.2
Identities = 11/38 (28%), Positives = 22/38 (56%)
Query: 17 DIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISI 54
D++ LH ++ +NA K+LE+ ++E N K + +
Sbjct: 293 DLLSFLHKLIASSNAPKSLEIFLQELNNNTKSNSNMKV 330
>SPBC11C11.03 [D] KOG0995 Centromere-associated protein HEC1
Length = 624
Score = 28.9 bits (63), Expect = 4.2
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 27 SKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQL-EENRDSKDFSFEGIQELNEEYAK 85
S+ N +K L+V +EEK+ +++QL +E RDS + E E+ K
Sbjct: 328 SRTNLMKQLQVNIEEKE--------------SQLQLLKEKRDSLKYQVENQDISISEFEK 373
Query: 86 VLAERQAWSTKTALLMAEPSNIE---------LVEIIDQAHKKIEELDN 125
+++ER+ ++ ++ S + + ID KK+++ ++
Sbjct: 374 MVSEREQLDRNLNMIGSKISELRKEVFDTDLLIQASIDSLEKKVQKFNS 422
>Hs20537253 [U] KOG4809 Rab6 GTPase-interacting protein involved in
endosome-to-TGN transport
Length = 603
Score = 28.9 bits (63), Expect = 4.2
Identities = 23/106 (21%), Positives = 51/106 (47%), Gaps = 11/106 (10%)
Query: 26 VSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNEE--- 82
+ + + +K+LE+ +E+KK C K+ ++ +E++ + I++L++E
Sbjct: 276 LKRDSKLKSLEIAIEQKKEEC---SKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASY 332
Query: 83 YAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEELDNNVK 128
Y + QA + ++ E N + + KKI EL+ ++K
Sbjct: 333 YRDECGKAQAEVDRLLEILKEVENEK-----NDKDKKIAELERHMK 373
>Hs7705433 [JK] KOG3677 RNA polymerase I-associated factor - PAF67
Length = 564
Score = 28.5 bits (62), Expect = 5.5
Identities = 14/55 (25%), Positives = 31/55 (55%), Gaps = 2/55 (3%)
Query: 3 LNYLNENYKPFAINDIIQNLHNAVSKANAVKALEVLVE--EKKINCKQFGKISIY 55
+++L N K + ++ ++ LH+ V K+N + LEV + + ++G+ S+Y
Sbjct: 212 IDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLY 266
>CE27278 [TZ] KOG1923 Rac1 GTPase effector FRL
Length = 1088
Score = 28.5 bits (62), Expect = 5.5
Identities = 11/51 (21%), Positives = 32/51 (62%)
Query: 81 EEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEELDNNVKYLT 131
++Y ++AE ++ + ++ + + I++ +++D +++K E LD N + L+
Sbjct: 326 DKYIDMMAECESDELQERMISYQNNGIDVQQLLDDSNQKTELLDENERILS 376
>CE17780 [PT] KOG0499 Cyclic nucleotide-gated cation channel CNCG4
Length = 800
Score = 28.5 bits (62), Expect = 5.5
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 18 IIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQ 77
+++N + K +KA L + KIN +Q K+ + N ++ EN+ G+Q
Sbjct: 659 MLKNDKKSDEKTEKIKAQAELEDRCKINPRQVPKLITLIANMTEMNENK--------GVQ 710
Query: 78 ELNE--EYAKVLAERQA----WST 95
EL + E + RQ+ WST
Sbjct: 711 ELKKVIEEETEKSRRQSIYYPWST 734
>At5g48120 [LK] KOG1967 DNA repair/transcription protein Mms19
Length = 1152
Score = 28.5 bits (62), Expect = 5.5
Identities = 19/85 (22%), Positives = 41/85 (47%), Gaps = 8/85 (9%)
Query: 16 NDIIQNLHNAVS-------KANAVKALEVLVEEKKINCKQFGK-ISIYVRNEIQLEENRD 67
N ++Q+L V + +++KA+ +E ++ Q + + +Y+ L RD
Sbjct: 6 NQLVQHLETFVDTNRSSSQQDDSLKAIASSLENDSLSITQLVREMEMYLTTTDNLVRARD 65
Query: 68 SKDFSFEGIQELNEEYAKVLAERQA 92
S+ F + ++ N YA+ + R+A
Sbjct: 66 SRLFESKAVERYNSSYARWILFRKA 90
>7294088 [U] KOG3202 SNARE protein TLG1/Syntaxin 6
Length = 232
Score = 28.5 bits (62), Expect = 5.5
Identities = 21/81 (25%), Positives = 38/81 (45%), Gaps = 4/81 (4%)
Query: 65 NRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIEL-VEII--DQAHKKIE 121
+ DS D +EG + L + L +RQ + +T+ + S+I+ +E + D H K+
Sbjct: 5 DHDSWDIEYEGCERLRHQLLVYLNQRQQLNPRTSQFVQLTSSIQTGIEQLAKDMKHLKV- 63
Query: 122 ELDNNVKYLTDSPTDFASNNI 142
LDN + + T + I
Sbjct: 64 VLDNAITWETSPEEELQQRRI 84
>YLR383w [L] KOG0250 DNA repair protein RAD18 (SMC family protein)
Length = 1114
Score = 28.1 bits (61), Expect = 7.2
Identities = 29/122 (23%), Positives = 53/122 (42%), Gaps = 10/122 (8%)
Query: 17 DIIQNLHNAVSKANAVKALEVLVEE--KKINCKQFGKISIYVRNEIQLEENRDSKDFSFE 74
D+ N + N + ++ V+E +KI +Q KI Y + +E D+K
Sbjct: 315 DVAHNTDACKNLENEISGIQQKVDEVTEKIRNRQ-EKIERYTSDGTTIEAQIDAK----- 368
Query: 75 GIQELNEEYAKVLAERQAWSTKTALLMAEPSN-IELVEIIDQAHKKIEELDNNVKYLTDS 133
+ +NE+ ++ R+ + E SN E IDQ KK++ L+ + +L +
Sbjct: 369 -VIYVNEKDSEHQNARELLRDVKSRFEKEKSNQAEAQSNIDQGRKKVDALNKTIAHLEEE 427
Query: 134 PT 135
T
Sbjct: 428 LT 429
Score = 28.1 bits (61), Expect = 7.2
Identities = 28/120 (23%), Positives = 53/120 (43%), Gaps = 7/120 (5%)
Query: 27 SKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGI-QELNEEYAK 85
S N ++ + E K+N + I + ++I +N++ S+E +EL + +
Sbjct: 739 STKNEMRKTNFRMTELKMNVGKVVDTGI-LNSKINERKNQEQAIASYEAAKEELGLKIEQ 797
Query: 86 VLAERQAW-----STKTALLMAEPSNIELVEIIDQAHKKIEELDNNVKYLTDSPTDFASN 140
+ E Q STK AL+ A+ +L E I+ KI++ ++ Y D + N
Sbjct: 798 IAQEAQPIKEQYDSTKLALVEAQDELQQLKEDINSRQSKIQKYKDDTIYYEDKKKVYLEN 857
>YDL116w [YU] KOG1964 Nuclear pore complex rNup107 component (sc Nup84)
Length = 726
Score = 28.1 bits (61), Expect = 7.2
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 32 VKALEVLVEEKKIN--CKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELN--EEYAKVL 87
VKALE +E I CK + I + I +EN D + ++E+ E K +
Sbjct: 543 VKALEQFMERNNIGEICKNYELEKI--ADNISKDENED------QFLEEITQYEHLIKGI 594
Query: 88 AERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEEL 123
E + W +LL +E + L+E + K EL
Sbjct: 595 REYEEWQKSVSLLSSESNIPTLIEKLQGFSKDTFEL 630
>YDL058w [U] KOG0946 ER-Golgi vesicle-tethering protein p115
Length = 1790
Score = 28.1 bits (61), Expect = 7.2
Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 11/112 (9%)
Query: 28 KANAVKAL--EVLVEEKKINCKQFGKISIYVRNEIQLEENRD-------SKDFSFEGIQE 78
K N +K+L E+L + KI +SI N+ LE ++ SK EG+++
Sbjct: 1429 KQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKK 1488
Query: 79 LNEEYAKVLAERQAWSTKTALLMA--EPSNIELVEIIDQAHKKIEELDNNVK 128
L EE +K AE + L + E + EL ++ K E+L+ + K
Sbjct: 1489 LEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKK 1540
>Hs4885231 [T] KOG0194 Protein tyrosine kinase
Length = 822
Score = 28.1 bits (61), Expect = 7.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 17 DIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGI 76
+++Q ++K AV LE +EE C++ I + + + LEE + S +
Sbjct: 315 ELMQTQQMLLNKEEAVLELEKRIEESSETCEKKSDIVLLLSQKQALEELKQS-------V 367
Query: 77 QELNEEYAKVLAERQAWSTK 96
Q+L AK A+++ K
Sbjct: 368 QQLRCTEAKFSAQKELLEQK 387
>Hs4504511 [O] KOG0712 Molecular chaperone (DnaJ superfamily)
Length = 397
Score = 28.1 bits (61), Expect = 7.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 106 NIELVEIIDQAHKKIEELDNNVKYLTDSPTDFASNNIIKCL 146
+I+LVE + K I LDN +T P + IKC+
Sbjct: 263 DIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCV 303
>Hs20542063 [Z] KOG0161 Myosin class II heavy chain
Length = 1939
Score = 28.1 bits (61), Expect = 7.2
Identities = 23/98 (23%), Positives = 49/98 (49%), Gaps = 6/98 (6%)
Query: 35 LEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWS 94
L+V E+ +N + + ++N+IQLE + E +E+N A++ A+++
Sbjct: 891 LQVQAEQDNLNDAE-ERCDQLIKNKIQLEAKVKEMNERLEDEEEMN---AELTAKKRKLE 946
Query: 95 TKTALLMAEPSNIELVEIIDQAHKKIEELDNNVKYLTD 132
+ + L + ++EL + + K+ +N VK LT+
Sbjct: 947 DECSELKKDIDDLELT--LAKVEKEKHATENKVKNLTE 982
>CE10836 [U] KOG2148 Exocyst protein Sec3
Length = 848
Score = 28.1 bits (61), Expect = 7.2
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 15 INDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKD-FSF 73
IN ++ + ++ +++ A VE + + I +VRN I+L E +DS
Sbjct: 206 INSMMDSENSVNQLLSSIDAALTGVESVEKELDRCDDILAFVRNSIELIEEKDSLSVVER 265
Query: 74 EGIQELNEEYAKVLAERQAWSTK--TALLMAEPSNIELVEIIDQAHKKIEE 122
+ Q LNEE + QA + L A SN E V+ A + + +
Sbjct: 266 KNKQRLNEEIVSFVNSLQAVTDSHIETLKQANFSNPESVQRCTDAARAVAQ 316
>At4g25940 [TU] KOG0251 Clathrin assembly protein AP180 and related proteins
contain ENTH domain
Length = 574
Score = 28.1 bits (61), Expect = 7.2
Identities = 34/142 (23%), Positives = 62/142 (42%), Gaps = 5/142 (3%)
Query: 6 LNENYKPF-AINDIIQNLHNA---VSKANAVKALEVLVEEKKINCKQF-GKISIYVRNEI 60
L E++K + AIND I NL + +S+ +AVKAL + + F + Y++
Sbjct: 232 LKESFKIYCAINDGIINLVDMFFEMSRHDAVKALNIYKRAGQQPPPSFLATMEDYIKEAP 291
Query: 61 QLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHKKI 120
Q + ++ + +E EE A+ + + + + L+E ++ +KI
Sbjct: 292 QSGSVQKKLEYQEKEEEEQEEEEAEHSVQPEEPAEADNQKENSEGDQPLIEEEEEDQEKI 351
Query: 121 EELDNNVKYLTDSPTDFASNNI 142
EE D +L D+ N I
Sbjct: 352 EEEDAKPSFLIDTDDLLGLNEI 373
>7298982 [ODR] KOG4151 Myosin assembly protein/sexual cycle protein and
related proteins
Length = 947
Score = 28.1 bits (61), Expect = 7.2
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 7 NENYKPFAINDIIQNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENR 66
NE +K + +++ A+ + K L V + + + GK V + E+
Sbjct: 21 NEAFKASRWEEAVEHYGKAIKAGSKHKELAVFYKNRAAAYLKLGKYENAVED---CTESL 77
Query: 67 DSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIIDQAHKKIEE---- 122
+ + + + Y + +A+ TAL A+P N + ++ + H +EE
Sbjct: 78 KAAPGDPKALFRRAQAYEALEKFEEAYKDATALFKADPGNKTVQPMLQRLHVVVEERSAR 137
Query: 123 ---LDNNVKYLTDSPTDFAS 139
VK + D D A+
Sbjct: 138 NAKTSTKVKQMMDLTFDLAT 157
>SPCC306.04c [BK] KOG1080 Histone H3 (Lys4) methyltransferase complex subunit
SET1 and related methyltransferases
Length = 920
Score = 27.7 bits (60), Expect = 9.5
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 25 AVSKANAV----KALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQELN 80
AV +AN + K L V+++ C++ K ++ + EE + F E
Sbjct: 158 AVQQANGLRFSGKPLSVVLDRDGSLCEEAFKKALNAVEKQFQEETLQKQRFEREDESSRQ 217
Query: 81 EEYAKVLAERQAWSTKTALLMAEPS-NIELVEIIDQAHKKIEELDNNVKYLTDSPTDFAS 139
+ A + + W +PS N + + D H K++ +D +LT S TD
Sbjct: 218 KLSAAMNEDIPPWR--------QPSKNSQTLSNGDLQHSKVQNVDQKSGFLTSSETDVPK 269
Query: 140 N 140
N
Sbjct: 270 N 270
>Hs7706751 [Z] KOG1374 Gamma tubulin
Length = 451
Score = 27.7 bits (60), Expect = 9.5
Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 7/59 (11%)
Query: 45 NCKQFGKISI------YVRNEIQLEENRDSKDFSFEGIQELNEEY-AKVLAERQAWSTK 96
+C+QF K+ R E ++N D D S E +QEL +EY A + +W T+
Sbjct: 391 SCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWGTQ 449
>ECU11g1370 [K] KOG1831 Negative regulator of transcription
Length = 1461
Score = 27.7 bits (60), Expect = 9.5
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 55 YVRNEIQLEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLMAEPSNIELVEIID 114
Y++ ++ EN F F ++ Y +L+E + T +L+ + ELV +
Sbjct: 476 YIKGSLKHPENEREYSFGFRCLEVFLPSYPSILSEVEEIETVNNILIKK----ELVLMDS 531
Query: 115 QAHKKIEELDNNVK--YLTDSPTDFASNNIIKCL 146
+ H + EL++ V+ + D+ + + +IK L
Sbjct: 532 ETHPML-ELEDIVRLIFKCDARNESRATEVIKSL 564
>CE27421 [R] KOG2133 Transcriptional corepressor Atrophin-1/DRPLA
Length = 1127
Score = 27.7 bits (60), Expect = 9.5
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 6 LNENYKPFAINDIIQNLHNAVSKANAVKALEVL----VEEKKINCKQFGKISIYVRNEIQ 61
LN K ++ +I L+ + K N V+ +E + C+ +S+ +R+E
Sbjct: 638 LNGFKKEESVEEIKLELNGTIKKENGVETDPTTPTCSMEAENEVCETPAVVSVEIRDETN 697
Query: 62 LEENRDSKDFSFEGIQELNEEYAKVLAERQAWSTKTALLM 101
E N D KD E ++ + E L + TK A+ +
Sbjct: 698 GETNSDLKD--DENVEPDSPEDTFELGSNVEFETKNAMFV 735
>At5g33300 [Z] KOG0244 Kinesin-like protein
Length = 436
Score = 27.7 bits (60), Expect = 9.5
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 20 QNLHNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENRDSKDFSFEGIQEL 79
Q L A+K L++L++ KKI+ + S +EIQ N I
Sbjct: 159 QKLLKNTQALTALKRLKMLLQSKKISSNKKKGPSKGTSSEIQESSNESGLLMKLNKIHSD 218
Query: 80 NEEYAKVLAER-QAWSTKTALLMAE 103
E K +AE + +S + LL AE
Sbjct: 219 YERQMKEMAEEIKRFSLEAGLLKAE 243
>7301732 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 756
Score = 27.7 bits (60), Expect = 9.5
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 23 HNAVSKANAVKALEVLVEEKKINCKQFGKISIYVRNEIQLEENR--DSKDFSFEGIQELN 80
H+ K+N + E+K+ C ++G+I I L++ R D+ + F ++E N
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKCDEYGEI-------INLDDYRIADATGYEFVPMEEQN 498
Query: 81 EEYAK-----VLAERQA 92
+E K + AE+QA
Sbjct: 499 KENVKKEEPGIGAEQQA 515
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,234,405
Number of Sequences: 60738
Number of extensions: 369192
Number of successful extensions: 1505
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1482
Number of HSP's gapped (non-prelim): 55
length of query: 186
length of database: 30,389,216
effective HSP length: 100
effective length of query: 86
effective length of database: 24,315,416
effective search space: 2091125776
effective search space used: 2091125776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)