ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2786 check: MH A KOG0128 RNA processing and modification RNA-binding protein SART3 (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2786 968674 969969 432
(432 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR268c [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 333 4e-91
SPBC1861.04c [A] KOG0128 RNA-binding protein SART3 (RRM superfam... 178 2e-44
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 78 2e-14
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 78 2e-14
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 77 5e-14
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 75 1e-13
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 75 2e-13
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 74 6e-13
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 72 2e-12
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 71 3e-12
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 71 4e-12
CE28911 [R] KOG0118 FOG: RRM domain 70 8e-12
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 69 1e-11
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 68 2e-11
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 68 2e-11
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 68 3e-11
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 67 7e-11
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 63 1e-09
7291799 [R] KOG0118 FOG: RRM domain 62 2e-09
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 61 4e-09
At5g50250 [R] KOG0118 FOG: RRM domain 61 4e-09
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 61 4e-09
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 61 4e-09
At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 59 1e-08
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 59 2e-08
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 59 2e-08
At1g34140 [R] KOG0118 FOG: RRM domain 56 1e-07
At1g01080 [R] KOG0118 FOG: RRM domain 54 5e-07
At4g24770 [R] KOG0118 FOG: RRM domain 53 8e-07
Hs8922073 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 52 1e-06
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 52 2e-06
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 52 2e-06
At3g52660 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 52 2e-06
At1g60000 [R] KOG0118 FOG: RRM domain 52 2e-06
YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily) 51 3e-06
YNL016w [R] KOG0118 FOG: RRM domain 51 3e-06
SPAC343.07 [R] KOG0118 FOG: RRM domain 51 4e-06
At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein 50 5e-06
Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 50 7e-06
7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 50 7e-06
SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily) 50 9e-06
ECU02g0250 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 50 9e-06
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 50 9e-06
>YMR268c [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 444
Score = 333 bits (853), Expect = 4e-91
Identities = 181/441 (41%), Positives = 276/441 (62%), Gaps = 12/441 (2%)
Query: 2 NAENNKRRPEDENVSVEEAATLKKVKNLHTHNREYTTVLVKNLPPNYNHHKVRRYFKTCG 61
+A + +RP DE T KK T NRE TTVLVKNLP +YN +KV +YFK CG
Sbjct: 6 HARPDSKRPLDEGSPAAAGLTSKKANEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCG 65
Query: 62 SILQIDVTDSTDGDSKLARIEFSSYDQALTAVSRTLKKIGFHQITVEQLTDSTIWVTNFP 121
I+ +DV DS + + ARIEF+ YD AL A+++T K +G ++I V LT+ T+W+TNFP
Sbjct: 66 PIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFP 125
Query: 122 PGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEIN 181
P Y +R+LL Q I+ LSIRLPSL FN+ RRFAY+D+ S E A+ +LNG++I
Sbjct: 126 PSYTQRNIRDLL-QDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE 184
Query: 182 NYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIK-MFNEFGDTEKARIVT 240
Y LV K+SN E+++RTD+A +GREI+++NL ++ ++L++ F FG EK I
Sbjct: 185 GYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA 244
Query: 241 GDETNPGRHSRYAFITFKNKASADNALSLNGAVMNGKPLHVSKVMRKAYLERQEVKRLLA 300
G + + ++ AF+ F+NK SA+ AL +N +++ + + VS +K +LER EVKRLLA
Sbjct: 245 GQKEH-SFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKPFLERNEVKRLLA 303
Query: 301 SR--KENPKVVGIYPLSDQITPDQILAFITEKAQIRPPDITKVLLVSDHEGALIIADKEA 358
SR KE ++ ++PLSD+++P I F+ E+ I DI K+LLVSD GA+II
Sbjct: 304 SRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSK 363
Query: 359 ITAKVSLAINGYKFKNRILKCVSAHELSLHYPNEHKTTLNQPKHAVVKEIKSQQASQNDK 418
AK+ + +NG +F+ ++++ + +++ +Y N+ ++ K + + ++ Q K
Sbjct: 364 FAAKMLMILNGSQFQGKVIRSGTINDMKRYYNNQQNHSMKHVKPSCINMMEKGPNLQVKK 423
Query: 419 K-------LSNDDFRKLFLSK 432
K +SNDDFRK+FL +
Sbjct: 424 KIPDKQEQMSNDDFRKMFLGE 444
>SPBC1861.04c [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 1014
Score = 178 bits (451), Expect = 2e-44
Identities = 132/471 (28%), Positives = 223/471 (47%), Gaps = 61/471 (12%)
Query: 3 AENNKRRPEDENVSVEEAATLKKVKNLHTH-NREYTTVLVKNLPPNYNHHKVRRYFKTCG 61
A + KR+P +E KK K + H NRE TVLV NLP + + ++++ +FK CG
Sbjct: 561 ALSKKRKPG------QEGDVFKKSKPIEQHRNREELTVLVTNLPSDISENELKIFFKDCG 614
Query: 62 SILQIDVTDSTDGDSKLARIEFSSYDQALTAVSRTLKKIGFHQITVEQLTDSTIWVTNFP 121
+I++I + + D K+A+IEFS + L A +R LK I H+I+V+ D+ ++VTNFP
Sbjct: 615 NIIRIFILEDNQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEISVQIHVDTNLYVTNFP 674
Query: 122 PGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEIN 181
P YD + L S Y ++ +R PSL +N+ RRF YV + P+ A A +
Sbjct: 675 PTYDELDITKLFSAY--GNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEE 732
Query: 182 NYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTG 241
Y + IS+ RT R+ A+ +GRE+ V N+ + D+ F ++G E RI
Sbjct: 733 KYPIQVFISDPLRRTPRS-GAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI--- 788
Query: 242 DETNPGRHSRYAFITFKNKASADNALSLNGAVMNGKPLHVSKVMRKAYLERQEVK----R 297
+H + ++ A+NALS G + + L+V + LE+ V R
Sbjct: 789 -PKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNR 847
Query: 298 LLASRKENP-----------------KVVGIYPLSDQITPDQILAFITEKAQIRPPDITK 340
LA E K +G+ + + ++ + ++ +
Sbjct: 848 TLAKSFETTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKLY-----R 902
Query: 341 VLLVSDHEGALIIADKEAITAKVSLAINGYKFKNRILKCVSAHELSLHYPN-----EHKT 395
V+L +HEGA++ K SLA+ G++ R+L + +E+ + P+ ++ T
Sbjct: 903 VVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGRLLHITTVNEMMHNVPSSMNHSDYNT 962
Query: 396 TLNQPKHAVVK----------EIKSQQASQNDKKL------SNDDFRKLFL 430
+ +P+ + I S++ +DK++ SNDDFRK+FL
Sbjct: 963 SATRPRRLGSRTFQGFNSNHSNINSKKDDLDDKEMQIDAPKSNDDFRKMFL 1013
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 78.2 bits (191), Expect = 2e-14
Identities = 70/296 (23%), Positives = 132/296 (43%), Gaps = 38/296 (12%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAVSRTL- 97
+ VKNL + N+ + G+IL +V +G + F +++ A A+ +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 98 -----KKIGFHQITVEQLTDS----------TIWVTNFPPGYDASKLRNLLSQYIDSPIL 142
+K+ Q + ++ +++ NF D +L++L ++ P L
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF--GPAL 218
Query: 143 SIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNER---TER 198
S+++ + + F +V E A+KA + +NG E+N ++ V + ER +R
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 199 TDNAISDGR-------EIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSR 251
T + R + VKNL D I + L K F+ FG A+++ GR
Sbjct: 279 TFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM----MEGGRSKG 334
Query: 252 YAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK----AYLERQEVKRLLASR 302
+ F+ F + A A++ +NG ++ KPL+V+ RK AYL + ++R+ + R
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVR 390
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 78.2 bits (191), Expect = 2e-14
Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 39/300 (13%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
V +KNL ++ + F G+IL V G+SK + F + + A T++ +
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
Query: 98 ------KKIGFHQITVEQLTD----------STIWVTNFPPGYDASKLRNLLSQYIDSPI 141
KK+ + + + + ++V NF +D KL+ Y I
Sbjct: 152 GMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY--GKI 209
Query: 142 LSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYK--LVAKISNVNERTERT 199
S ++ S + F +V + E A+ A LNG ++ K VA+ ER +
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 200 DNAISD----------GREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRH 249
+ G + VKNL D I D L F+ +G+ A+++T +E GR
Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE---GRS 326
Query: 250 SRYAFITFKNKASADNALS-LNGAVMNGKPLHVS----KVMRKAYLERQEVKRLLASRKE 304
+ F+ F + A A++ LNG V+ KPL+V+ K RKA+L Q ++ + R +
Sbjct: 327 KGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQ 386
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 77.0 bits (188), Expect = 5e-14
Identities = 70/297 (23%), Positives = 128/297 (42%), Gaps = 40/297 (13%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAVSRT-- 96
V +KNL + ++ + F G+IL V +G A + F + + A A+ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 97 --------------LKKIGFHQITVEQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPIL 142
+K ++ + + +++ NF D L+ L SQ+ L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF--GKTL 218
Query: 143 SIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKLV------------AKIS 190
S+++ + F +V E A KA +NG EI+ K++ A++
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISG-KIIFVGRAQKKVERQAELK 277
Query: 191 NVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHS 250
E+ ++ + G + +KNL D I + L K F+ FG A+++ D GR
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSK 333
Query: 251 RYAFITFKNKASADNALS-LNGAVMNGKPLHVS----KVMRKAYLERQEVKRLLASR 302
+ F+ F + A A++ +NG ++ KPL+V+ K RKA+L Q ++R+ R
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMR 390
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 75.5 bits (184), Expect = 1e-13
Identities = 62/276 (22%), Positives = 123/276 (44%), Gaps = 34/276 (12%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEF---SSYDQALTAVSR 95
V +KNL + ++ + +F G IL V G A + F S+ D+A+ ++
Sbjct: 217 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 276
Query: 96 TLKK-----IGFHQITVEQLTD--------STIWVTNFPPGYDASKLRNLLSQYIDSPIL 142
L K +G + ++ + + +++ NF D +L+++ S+Y L
Sbjct: 277 KLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY--GKTL 334
Query: 143 SIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKLV-----------AKISN 191
S+++ + + + F +V S E AKKA +NG +IN + A++
Sbjct: 335 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 394
Query: 192 VNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSR 251
+ E+ +R G ++ +KNL D I + L F+ FG + +++ + G+
Sbjct: 395 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE----GQSKG 450
Query: 252 YAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMR 286
+ I F + A A++ +NG ++ KPL ++ R
Sbjct: 451 FGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 486
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 75.1 bits (183), Expect = 2e-13
Identities = 68/306 (22%), Positives = 128/306 (41%), Gaps = 41/306 (13%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAVSRT-- 96
+ +KNL + ++ + F G+IL V +G + F + + A A+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 97 --------------LKKIGFHQITVEQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPIL 142
+K ++ + +++ NF D +L++L P L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-----PAL 215
Query: 143 SIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKLVA-----KISNVNERTE 197
S+++ + + F +V E A+KA + +NG E+N ++ K+ E
Sbjct: 216 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 275
Query: 198 RTDNAISD------GREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSR 251
+ + D G + VKNL D I + L K F+ FG A+++ GR
Sbjct: 276 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM----MEGGRSKG 331
Query: 252 YAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK----AYLERQEVKRLLASRKENP 306
+ F+ F + A A++ +NG ++ KPL+V+ RK A+L Q ++R+ + R
Sbjct: 332 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPN 391
Query: 307 KVVGIY 312
V+ Y
Sbjct: 392 PVINPY 397
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 73.6 bits (179), Expect = 6e-13
Identities = 69/276 (25%), Positives = 119/276 (43%), Gaps = 32/276 (11%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
+ VKNL + ++ + F CG+I+ V G S+ ++F + D A A+ +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 98 KKI-GFHQITV-------------EQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPILS 143
K+ QI V +++ + ++V N +L+ QY I S
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQY--GSISS 253
Query: 144 IRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYK-LVAKISNVNER----TER 198
+ R F +V+ +PE A +A LNG + ++ + V K +ER + R
Sbjct: 254 AVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRR 313
Query: 199 TDNAISDGRE------IIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRY 252
+ SDG + VKNL D +T + L ++F EFG +++ G
Sbjct: 314 YEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS---GTSKGS 370
Query: 253 AFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK 287
F+ F + A L+ +NG ++ GKPL+V+ RK
Sbjct: 371 GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Score = 52.4 bits (124), Expect = 1e-06
Identities = 57/244 (23%), Positives = 103/244 (41%), Gaps = 31/244 (12%)
Query: 141 ILSIRL-PSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKLVAKISNVNERTERT 199
++S+R+ A N+ + YV+ + + A+KA +LN +N + S+ + R
Sbjct: 72 VVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARR- 130
Query: 200 DNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKN 259
S + VKNL + L + F+ G ++ T + G+ Y F+ F
Sbjct: 131 ----SGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT---DHMGQSRGYGFVQFDT 183
Query: 260 KASADNAL-SLNGAVMNGKPLHVSKVMRKAYLERQEVKRLLASRKENPKVVGIY--PLSD 316
+ SA NA+ LNG V+N K + V +RK E S + K +Y LS+
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERE---------SAADKMKFTNVYVKNLSE 234
Query: 317 QITPDQILAFITEKAQIRPPDITKVLLVSDHEG-----ALIIADKEAITAKVSLAINGYK 371
T D++ + I+ +++ D +G + + A+ A+NG K
Sbjct: 235 ATTDDELKTTFGQYG-----SISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKK 289
Query: 372 FKNR 375
F ++
Sbjct: 290 FDDK 293
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 71.6 bits (174), Expect = 2e-12
Identities = 79/347 (22%), Positives = 142/347 (40%), Gaps = 46/347 (13%)
Query: 6 NKRRPEDENVSVEE---AATLKKVKNLHTHNREYTT-------VLVKNLPPNYNHHKVRR 55
N PED + ++E A + + NR+ +T V +KNL + ++ +
Sbjct: 91 NFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYE 150
Query: 56 YFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTLKKI-GFHQITVEQLTD- 112
F + G+IL V G SK ++F + A A+ + + Q+ V
Sbjct: 151 TFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 210
Query: 113 --------------STIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFA 158
+ ++V N P +L+ +Y D I S + + R F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGD--ISSAVVMKDQSGNSRSFG 268
Query: 159 YVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERTDNAISD----------GR 207
+V+ VSPE A A ++NGI + L V + ++R E G
Sbjct: 269 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGS 328
Query: 208 EIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL 267
+ +KNL D + + L +MF+E+G+ +++ + G + F+ + N A A+
Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ---GLSRGFGFVAYSNPEEALLAM 385
Query: 268 -SLNGAVMNGKPLHVSKVMRKAYLERQEVKRLLASRKENPKVVGIYP 313
+NG ++ KPL+V+ RK ERQ + L ++ +P + P
Sbjct: 386 KEMNGKMIGRKPLYVALAQRKE--ERQAHLQSLFTQIRSPGTMSPVP 430
Score = 67.0 bits (162), Expect = 5e-11
Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 33/336 (9%)
Query: 20 AATLKKVKNLHTHNREYTTVLVKNLPPNYNHHKVRRYFKTCGSILQIDVT-DSTDGDSKL 78
AA + L TH +++ V +L P+ N + F + + V D T
Sbjct: 30 AAAAAAAEALQTHPN--SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGY 87
Query: 79 ARIEFSSYDQALTAVSRTLKKIGFH-------QITVEQLTDST-------IWVTNFPPGY 124
A + F++ + A SR ++ + + +I + ST +++ N
Sbjct: 88 AYVNFANPEDA----SRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASI 143
Query: 125 DASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYK 184
D L S + ILS ++ + + +V E A+ A ++LNG+ +N+ +
Sbjct: 144 DNKALYETFSSF--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQ 201
Query: 185 L-VAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDE 243
+ V +R A+ + VKNLP +IT D+L K F ++GD A +V D+
Sbjct: 202 VFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQ 260
Query: 244 TNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMRKAYLE---RQEVKRLL 299
+ G + F+ F + +A A+ +NG + L+V + +K+ E R++ ++
Sbjct: 261 S--GNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318
Query: 300 ASRKENPKVVGIY--PLSDQITPDQILAFITEKAQI 333
SR E + +Y L D + +++ +E +
Sbjct: 319 ISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNV 354
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 71.2 bits (173), Expect = 3e-12
Identities = 72/295 (24%), Positives = 127/295 (42%), Gaps = 35/295 (11%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
V +KNL P ++ + F G IL V G++K + F S + A A+
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 98 ------KKI--GFH------QITVEQLTDS--TIWVTNFPPGYDASKLRNLLSQYIDSPI 141
KK+ G H Q VE L + +++ N + +L Q+ I
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQF--GEI 287
Query: 142 LSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERTD 200
S+ L + R F +V+ + E A+KA + LN E KL V + +ER E
Sbjct: 288 TSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347
Query: 201 NAISD----------GREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHS 250
G + +KNL D++ + L F+ FG A+I+T ++ G+
Sbjct: 348 KRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ---GKSK 404
Query: 251 RYAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRKAYLERQEVKRLLASRKE 304
+ F+ + A+ A++ +N ++ GKPL+V+ RK + R +++ + +R +
Sbjct: 405 GFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE-VRRSQLEAQIQARNQ 458
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 70.9 bits (172), Expect = 4e-12
Identities = 73/297 (24%), Positives = 122/297 (40%), Gaps = 34/297 (11%)
Query: 36 YTTVLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAVSR 95
+ + VKNL + + R F GSIL V + ++F + A++A S
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSA 170
Query: 96 TLKKIGF-------------HQITVEQLTDST-IWVTNFPPGYDASKLRNLLSQYIDSPI 141
+ + + + DST ++V N L L SQY +
Sbjct: 171 LHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQY--GTV 228
Query: 142 LSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERTD 200
S+ + R F +V+ +PE AKKA L G+++ + KL V K +ER E
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLK 288
Query: 201 NAISDG---------REIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSR 251
SD + VKNL + + L ++F +G A+++ + GR
Sbjct: 289 QKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN---GRSKG 345
Query: 252 YAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRKAYLERQEVKRLLASRKENPK 307
+ F+ F N + A LNG +++GKP+ V+R A + +KRL + P+
Sbjct: 346 FGFVCFSNCEESKQAKRYLNGFLVDGKPI----VVRVAERKEDRIKRLQQYFQAQPR 398
Score = 50.1 bits (118), Expect = 7e-06
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 130 RNLLSQY-IDSPILSIRLPSLAFNSRRR-FAYVDLVSPEVAKKATNRLNGIEINNYKLVA 187
++L+ ++ ++ P++S+ L + + +AY++ SP A A RLN ++ +
Sbjct: 35 KDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRI 94
Query: 188 KISN---VNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDET 244
S R RT A + VKNL IT L +MF FG ++V E
Sbjct: 95 MWSQRDLAYRRRTRTGFA-----NLYVKNLDSSITSSCLERMFCPFGSILSCKVV---EE 146
Query: 245 NPGRHSRYAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK 287
N G+ + F+ F + SA +A S L+G+++ GK L V+K + K
Sbjct: 147 N-GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINK 189
>CE28911 [R] KOG0118 FOG: RRM domain
Length = 394
Score = 69.7 bits (169), Expect = 8e-12
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 67 DVTDSTDGDSKLARIEFSSYDQALTAVSRTLKKIGFHQITVEQLTDSTIWVTNFPPGYDA 126
+V T+G+ K + D+ +RTL+K E T++V N P +
Sbjct: 99 EVAPETEGEEKKDENKEGKRDRTKQRENRTLQKSNARASAAENAL--TVFVGNMPLTMNE 156
Query: 127 SKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKLV 186
+R + S + I S+R+ +L + + V ++ ++ K ++ ++ + V
Sbjct: 157 KSVRRIFSDF--GTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLTFYVKFGAEESV 214
Query: 187 AKISNVN-----ERTERTDNAISDGRE------IIVKNLPDDITIDDLIKMFN-EFGDTE 234
K N + R D S +E I V NLP +IT D LI F+ + G E
Sbjct: 215 EKALKYNGTKLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALITFFSAQIGPVE 274
Query: 235 KARIVTGDETNPGRHSRYAFITFKNKASADNALSLNGAVMNGKPLHVSKVMRKAYLER-Q 293
RIV +T G+ +AF+ FK +S ALS+ M + L ++KVM+K +L + Q
Sbjct: 275 AVRIVRDKDTGKGKG--FAFVNFKQDSSVSLALSMETIKMEKRDLRITKVMKKGHLTKIQ 332
Query: 294 EVKRLLASRKEN 305
K+ + K+N
Sbjct: 333 TAKKRTSHGKKN 344
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 68.9 bits (167), Expect = 1e-11
Identities = 67/280 (23%), Positives = 121/280 (42%), Gaps = 38/280 (13%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
+ +KNL + ++ + F + G+IL V G SK ++F + A A+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 98 KK--------IGFHQITVEQLTD--------STIWVTNFPPGYDASKLRNLLSQY-IDSP 140
+G E+ D + ++V N P +LR ++ + S
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257
Query: 141 ILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERT 199
+ +R S + R F +V+ E A A ++NGI + + L V + +ER E
Sbjct: 258 AVVMRDQS---GNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314
Query: 200 DNAI----------SDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRH 249
S G + +KNL D + + L +MF+E+G+ ++++ NP
Sbjct: 315 RRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVM----LNPQGM 370
Query: 250 SR-YAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK 287
SR + F+ + N A ALS +NG ++ KPL+++ RK
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410
Score = 51.2 bits (121), Expect = 3e-06
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 112 DSTIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKA 171
+S+++ + P + L +L + ++S+R+ +AY++ +P A +A
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVAN--VVSVRVCRDQNRRSLGYAYINFSNPNDAYRA 105
Query: 172 TNRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFG 231
LN + + + +SN + T +S I +KNL I L + F+ FG
Sbjct: 106 MEALNYTPLFDRPIRIMLSNRDPSTR-----LSGKGNIFIKNLDASIDNKALFETFSSFG 160
Query: 232 DTEKARIVTGDETNPGRHSRYAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRKAYL 290
++ D T GR Y F+ F+ + SA A+ LNG +MN K + V +R+
Sbjct: 161 TILSCKVAM-DVT--GRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Query: 291 ERQE 294
R E
Sbjct: 218 ARDE 221
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 68.2 bits (165), Expect = 2e-11
Identities = 82/334 (24%), Positives = 146/334 (43%), Gaps = 43/334 (12%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
+ +KNL ++ V F G+IL V +G+SK + F + A TA+ +
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 98 ------KKI--GFHQITVEQLTD--------STIWVTNFPPGYDASKLRNLLSQYIDSPI 141
KK+ G Q +++ + + ++V NF D KL + S++ I
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF--GEI 264
Query: 142 LSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNG--IEINNYKL-VAKISNVNERT-- 196
S + + A + F +V + A +A +LN +E + KL V + +ER+
Sbjct: 265 TSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAE 324
Query: 197 -ERTDNAISDGR-------EIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGR 248
+R A+ R + VKN+ +D+ D L F+ FG A+++ + GR
Sbjct: 325 LKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN---GR 381
Query: 249 HSRYAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK----AYLERQEVKRLLASRK 303
+ F+ F+ A A++ +N ++ KPL+V+ RK A L Q ++R LA+ +
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR-LATLR 440
Query: 304 ENPKVVGIYPLSDQITPDQILAFITE--KAQIRP 335
+ G+ ++ P Q F+ AQ RP
Sbjct: 441 MGQQASGVPAMTQLYQPGQQGYFVPNPMNAQGRP 474
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 68.2 bits (165), Expect = 2e-11
Identities = 82/334 (24%), Positives = 146/334 (43%), Gaps = 43/334 (12%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
+ +KNL ++ V F G+IL V +G+SK + F + A TA+ +
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 98 ------KKI--GFHQITVEQLTD--------STIWVTNFPPGYDASKLRNLLSQYIDSPI 141
KK+ G Q +++ + + ++V NF D KL + S++ I
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKF--GEI 264
Query: 142 LSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNG--IEINNYKL-VAKISNVNERT-- 196
S + + A + F +V + A +A +LN +E + KL V + +ER+
Sbjct: 265 TSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAE 324
Query: 197 -ERTDNAISDGR-------EIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGR 248
+R A+ R + VKN+ +D+ D L F+ FG A+++ + GR
Sbjct: 325 LKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN---GR 381
Query: 249 HSRYAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK----AYLERQEVKRLLASRK 303
+ F+ F+ A A++ +N ++ KPL+V+ RK A L Q ++R LA+ +
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR-LATLR 440
Query: 304 ENPKVVGIYPLSDQITPDQILAFITE--KAQIRP 335
+ G+ ++ P Q F+ AQ RP
Sbjct: 441 MGQQASGVPAMTQLYQPGQQGYFVPNPMNAQGRP 474
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 67.8 bits (164), Expect = 3e-11
Identities = 71/301 (23%), Positives = 128/301 (41%), Gaps = 45/301 (14%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
+ +KNL ++ + F G+IL V DG SK + F + + A A+ +
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 98 ------KKIGFHQI------------TVEQLTDSTIWVTNFPPGYDASKLRNLLSQYIDS 139
KK+ + T +Q T+ ++V NF Y+ L L +++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTN--VYVKNFGDHYNKETLEKLFAKF--G 237
Query: 140 PILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKLVAKISNVNERTERT 199
I S + ++ S+ F +V +PE A+ A L+ I L + +++ER
Sbjct: 238 NITSCEVMTVEGKSKG-FGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERH 296
Query: 200 DNAIS-------------DGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNP 246
G + VKNL + + D L K F +G+ A+++T +
Sbjct: 297 AELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN--- 353
Query: 247 GRHSRYAFITFKNKASADNALS-LNGAVMNGKPLHVS----KVMRKAYLERQEVKRLLAS 301
GR + F+ F+ A +A++ +N ++ KPL+V+ K R+A L Q ++RL +
Sbjct: 354 GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASM 413
Query: 302 R 302
R
Sbjct: 414 R 414
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 66.6 bits (161), Expect = 7e-11
Identities = 62/273 (22%), Positives = 116/273 (41%), Gaps = 35/273 (12%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAV-SRTL 97
+ +KNL + ++ + F G+IL V +G A + F S A A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 98 KKIGFHQITV----------------EQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPI 141
++ Q+ V ++ T + ++V N D KL+ L +Y P
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY--GPT 225
Query: 142 LSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINN--------YKLVAKISNVN 193
S+++ A + F +V + E A+KA L+G I+ K + +++ +
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELR 285
Query: 194 ERTERT---DNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHS 250
R ER + + G I +KNL + I + L + F+ FG +A+++ G+
Sbjct: 286 RRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM----MEVGQGK 341
Query: 251 RYAFITFKNKASADNAL-SLNGAVMNGKPLHVS 282
+ + F + A A+ +NG ++ KPLHV+
Sbjct: 342 GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
Score = 63.5 bits (153), Expect = 6e-10
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 152 NSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERT-ERTDNAISDGREI 209
N + +AYV S A +A +NG+ +NN ++ V + ER E + +
Sbjct: 142 NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNV 201
Query: 210 IVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNA-LS 268
VKN+ DDI + L ++F E+G TE +++ G+ + F+ ++ +A A L
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVI---RDASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 269 LNGAVMNGKPLHV----SKVMRKAYLERQEVKRLLASRKENPKVVGIY 312
L+G ++GK L+V K+ R A L R+ +RL K P V IY
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAEL-RRRFERLRLKEKSRPPGVPIY 305
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 62.8 bits (151), Expect = 1e-09
Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 41/303 (13%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
V VKNLP + + ++ FK G+I+ V DG S+ ++F D A A+ +TL
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI-QTL 172
Query: 98 KK--IGFHQITVEQLTDST-----------IWVTNFPPGYDASKLRNLLSQYIDSPILSI 144
+ +I V + T +++ N LR +++ I+S+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEF--GKIVSL 230
Query: 145 RLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERTDNAI 203
+ R +A+V+ +PE A++A +NG + + L V + ER +
Sbjct: 231 AIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQF 290
Query: 204 SDGRE----------IIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYA 253
+ E I VKN+ +T ++L K F++ G +++ ++ G+ +
Sbjct: 291 KEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK---GKSKGFG 347
Query: 254 FITFKNKASADNAL-SLNGAVMNGKPLHVS----KVMRKAYLE-----RQEVKRLLASRK 303
F+ F A +A+ + +G + +GKPL+V+ K RK L+ R E ++ +S
Sbjct: 348 FVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSAS 407
Query: 304 ENP 306
NP
Sbjct: 408 VNP 410
Score = 52.8 bits (125), Expect = 1e-06
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 113 STIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRR-FAYVDLVSPEVAKKA 171
++++V + P L + +++ + S+RL A + R + Y + +S + A A
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEF--KSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 172 TNRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFG 231
+ N +N K++ + +V R + + VKNLP+ +T L MF +FG
Sbjct: 82 IEKKNNSLLNG-KMIRVMWSVRAPDARRNGV----GNVFVKNLPESVTNAVLQDMFKKFG 136
Query: 232 DTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMRKAYL 290
+ ++ T ++ G+ Y F+ F+ + +A A+ +LN ++ K ++V K M+K
Sbjct: 137 NIVSCKVATLED---GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
Query: 291 ERQEVK 296
+ E K
Sbjct: 194 VKPEEK 199
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/191 (26%), Positives = 92/191 (47%), Gaps = 10/191 (5%)
Query: 115 IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNR 174
I++ N D + + S + IL+ + + R + +V S E A+ A +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVF--GNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEK 172
Query: 175 LNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTE 234
+NG+ NN K+ + R +R + + + VKNL ++ T L +MF +G
Sbjct: 173 VNGMLCNNQKV--HVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 235 KARIVTGDETNPGRHSRYAFITFKNKASADNA-LSLNGAVM-NGKPLHVSKVMRKAYLER 292
+++ +E GR R+ F+ ++N SA A + L+G + + K L+V++ + KA +
Sbjct: 231 SHKLMLDEE---GRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAE-RQ 286
Query: 293 QEVKRLLASRK 303
QE+ R L RK
Sbjct: 287 QEINRKLEERK 297
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 60.8 bits (146), Expect = 4e-09
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 115 IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNR 174
I++ N D L + S + ILS ++ SR F +V + E A++A N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTF--GNILSCKVACDEHGSRG-FGFVHFETHEAAQQAINT 157
Query: 175 LNGIEINNYKL-VAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDT 233
+NG+ +N+ K+ V + ER + I VKNLP D+ L +F++FG
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 234 EKARIVTGDETNPGRHSRYAFITFKNKASADNA-LSLNGAVMNGKPLHVSKVMRKAYLER 292
+++ N G + F+ F+ A A + +NG ++G+ L+ + ++ +ER
Sbjct: 218 LSVKVM---RDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR--VER 272
Query: 293 Q-EVKRLLASRKEN 305
Q E+KR K++
Sbjct: 273 QNELKRRFEQMKQD 286
Score = 58.9 bits (141), Expect = 1e-08
Identities = 56/226 (24%), Positives = 93/226 (40%), Gaps = 29/226 (12%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAVS---- 94
+ +KNL + ++ + F T G+IL V G + F +++ A A++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 95 ---RTLKKIGFH---------QITVEQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPIL 142
K H ++ L + I+V N P D L++L SQ+ +L
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF--GKML 218
Query: 143 SIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKLVA-----KISNVNERTE 197
S+++ R F +V+ E A+KA +NG E++ L A ++ NE
Sbjct: 219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKR 278
Query: 198 RTDNAISD------GREIIVKNLPDDITIDDLIKMFNEFGDTEKAR 237
R + D G + VKNL D I D L K F+ +G A+
Sbjct: 279 RFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 60.8 bits (146), Expect = 4e-09
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 5/173 (2%)
Query: 112 DSTIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKA 171
++ ++V N P D+ L L Q I + + + + R F +V + + E A+KA
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEV-IYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 172 TNRLNGIEINNYKL-VAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEF 230
+ N E+N +L V + + R ER I V NLP D+ L ++F+E
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEH 230
Query: 231 GDTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVS 282
G AR+V+ ET GR + F+ N+ + A+ +L+G + G+ + V+
Sbjct: 231 GKVVDARVVSDRET--GRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 60.8 bits (146), Expect = 4e-09
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Query: 115 IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNR 174
I++ N D L + S + I+S ++ + + + +V + E A+KA +
Sbjct: 126 IFIKNLDESIDHKALHDTFSSF--GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEK 183
Query: 175 LNGIEINNYKLVAKISNVNERTERTDNAISDG-REIIVKNLPDDITIDDLIKMFNEFGDT 233
LNG+ +N+ ++ + R ER A + VKNL + T DDL F E+G
Sbjct: 184 LNGMLLNDKQVY--VGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 241
Query: 234 EKARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMRKAYLER 292
A ++ E G+ + F+ F+N A A+ SLNG + K +V + +K+ E
Sbjct: 242 TSAVVMKDGE---GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Query: 293 QEVKRLLASRKE 304
+ R + KE
Sbjct: 299 ELRVRYEQNLKE 310
Score = 56.6 bits (135), Expect = 7e-08
Identities = 67/319 (21%), Positives = 134/319 (42%), Gaps = 42/319 (13%)
Query: 6 NKRRPEDENVSVEEAATL----KKVKNLHTHNREYT------TVLVKNLPPNYNHHKVRR 55
N P+D +++E + K ++ +++H + +KNL + +H +
Sbjct: 83 NFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHD 142
Query: 56 YFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSR------TLKKIGFHQITVE 108
F + G+I+ V + G SK +++++ + A A+ + K++
Sbjct: 143 TFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR 202
Query: 109 QLTDST--------IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYV 160
Q DST ++V N L+N +Y I S + + F +V
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEY--GKITSAVVMKDGEGKSKGFGFV 260
Query: 161 DLVSPEVAKKATNRLNGIEINNYK-LVAKISNVNER-TE---RTDNAISDGRE------I 209
+ + + A +A LNG + ++ + V + +ER TE R + + + + +
Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNL 320
Query: 210 IVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNALS- 268
VKNL I+ + L ++F+ FG ++++ G F+ F A A+S
Sbjct: 321 YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN---GTSKGSGFVAFATPEEATEAMSQ 377
Query: 269 LNGAVMNGKPLHVSKVMRK 287
L+G ++ KPL+V+ RK
Sbjct: 378 LSGKMIESKPLYVAIAQRK 396
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 60.8 bits (146), Expect = 4e-09
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 115 IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNR 174
I++ N D L S + PILS ++ + + +V + E A+ A ++
Sbjct: 135 IFIKNLDKSIDHKALHETFSAF--GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 175 LNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTE 234
LNG+ +N+ K V V++ + VKNL + ++ ++L K+F EFG T
Sbjct: 193 LNGMLLND-KQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTT 251
Query: 235 KARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMRKAYLERQ 293
I+ E G+ + F+ F+N A A+ +LNG + K V K +K+ E +
Sbjct: 252 SCVIMRDGE---GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Query: 294 EVKRLLASRKE 304
++ S KE
Sbjct: 309 LKQKFEQSLKE 319
Score = 52.8 bits (125), Expect = 1e-06
Identities = 62/278 (22%), Positives = 107/278 (38%), Gaps = 36/278 (12%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAVSRTLK 98
+ +KNL + +H + F G IL V G SK F YD A K
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSK--GYGFVQYDTDEAAQGAIDK 192
Query: 99 KIGF-------------HQI----TVEQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPI 141
G H++ + E++ + ++V N +L + ++
Sbjct: 193 LNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEF--GVT 250
Query: 142 LSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYK-LVAKISNVNERTERTD 200
S + + F +V+ + + A +A + LNG ++ + V K +ER
Sbjct: 251 TSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELK 310
Query: 201 NAI----------SDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHS 250
S G + VKNL + +T D L + F FG +++ D + R S
Sbjct: 311 QKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR-DPSGVSRGS 369
Query: 251 RYAFITFKNKASADNALS-LNGAVMNGKPLHVSKVMRK 287
F+ F A A++ +NG ++ KPL+V+ RK
Sbjct: 370 --GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
>At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 497
Score = 59.3 bits (142), Expect = 1e-08
Identities = 59/297 (19%), Positives = 117/297 (38%), Gaps = 31/297 (10%)
Query: 6 NKRRPEDENVSVEEAATLKKVKNLHTHNREYTTVLVKNLPPNYNHHKVRRYFKTCGSILQ 65
+K E++ + A +L++ NL + T+ V L + +F G ++
Sbjct: 33 HKETSEEKETTEGFACSLEQQDNLISAKAVSVTLFVSELSRQTKISDIIDFFSDVGEVVN 92
Query: 66 IDVTDSTDGDS------------------KLARIEFSSYDQALTAVSRTLKKIGFHQITV 107
+ + S G K + + + L + R + + T
Sbjct: 93 VRICLSHTGSCCVLALLSFLLLVRQTRHWKRRMVNICTIKRFLLKLLRQVHTVQSKDETP 152
Query: 108 EQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEV 167
D + V+N P + ++ + + ++S+RL + +V+ S
Sbjct: 153 PDFVDEVVIVSNLSPLTKIAHIKGFFNGV--AQVVSVRLVVNHEGKHVGYGFVEFASAYG 210
Query: 168 AKKATNRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMF 227
A KA NG ++N+K++ + +E + A + + V NL D I I D+I F
Sbjct: 211 ANKALEEKNGEYLHNHKIL--LMKGHESPGFAEEAAIT-KTLFVANLRDSIQISDIINFF 267
Query: 228 NEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNALSLNGAVMNGKPLHVSKV 284
+ G+ R++ + G+H+ + F+ F + A+ AL V NG+ LH K+
Sbjct: 268 KDVGEVVHVRLIVNSQ---GKHAGWGFVEFASANEAEKAL-----VKNGEYLHNYKI 316
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 58.5 bits (140), Expect = 2e-08
Identities = 63/300 (21%), Positives = 136/300 (45%), Gaps = 26/300 (8%)
Query: 6 NKRRPEDENVSVEE----AATLKKVKNLHTHNREYTTVLVKNLPPNYNHHKVRRYFKTCG 61
+K + EN+++++ AAT + +++ + ++ V +L P+ + + F G
Sbjct: 6 DKTAEQLENLNIQDDQKQAATGSESQSVENSS---ASLYVGDLEPSVSEAHLYDIFSPIG 62
Query: 62 SILQIDVTDSTDGDSKL--ARIEFSSYDQALTAVSRT--------LKKIGFHQI--TVEQ 109
S+ I V + L A + F+ ++ A+ + L +I + Q ++ +
Sbjct: 63 SVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK 122
Query: 110 LTDSTIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAK 169
I++ N P D L + S + D ILS ++ + + F +V AK
Sbjct: 123 KGSGNIFIKNLHPDIDNKALYDTFSVFGD--ILSSKIATDENGKSKGFGFVHFEEEGAAK 180
Query: 170 KATNRLNGIEINNYKL-VAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFN 228
+A + LNG+ +N ++ VA + ER + + + + VKN+ + T + ++F
Sbjct: 181 EAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA 240
Query: 229 EFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMRK 287
+FG A + ++ G+ + F+ ++ A A+ +LN + +NG+ L+V + +K
Sbjct: 241 KFGPIVSASL---EKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297
Score = 51.2 bits (121), Expect = 3e-06
Identities = 56/258 (21%), Positives = 110/258 (41%), Gaps = 28/258 (10%)
Query: 67 DVTDSTDGDSKLARIEFSSYDQALTAVSRTLKKIGFHQITVEQLTDSTIWVTNFPPGYDA 126
D+TD T + I+ A + S++++ + ++++V + P
Sbjct: 3 DITDKTAEQLENLNIQDDQKQAATGSESQSVEN-----------SSASLYVGDLEPSVSE 51
Query: 127 SKLRNLLSQYIDSPILSIRLPSLAFNSRRR-FAYVDLVSPEVAKKATNRLNGIEINNYKL 185
+ L ++ S + SIR+ A +AYV+ E +KA +LN I
Sbjct: 52 AHLYDIFSPI--GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLC 109
Query: 186 VAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETN 245
S + + + I +KNL DI L F+ FGD ++I T +
Sbjct: 110 RIMWSQRDPSLRKKGSG-----NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-- 162
Query: 246 PGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMRKAYLERQEVKRLLASRKE 304
G+ + F+ F+ + +A A+ +LNG ++NG+ ++V+ +L R+E L K
Sbjct: 163 -GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-----PHLSRKERDSQLEETKA 216
Query: 305 NPKVVGIYPLSDQITPDQ 322
+ + + ++ + T +Q
Sbjct: 217 HYTNLYVKNINSETTDEQ 234
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 58.5 bits (140), Expect = 2e-08
Identities = 61/278 (21%), Positives = 112/278 (39%), Gaps = 26/278 (9%)
Query: 38 TVLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSKLARIEFSSYDQALTAVSRTL 97
T+ V L P + R F G +L + + + S A + F + + A A+ R
Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSSFAFVTFENEEDAERAI-REY 73
Query: 98 KKIGFH--QITVEQLTD-----STIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLA 150
K H QI V + + I+V N P + L + S + I+S ++ + +
Sbjct: 74 KHYELHNRQIRVMKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMF--GEIVSCKVATTS 131
Query: 151 FNSRRRFAYVDLVSPEVAKKATNR---LNGIEINNYKLVAKISNVNERTERTDNAISDGR 207
+ + +V + AKK L+G+ + ++V ++ N + + +
Sbjct: 132 HGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFT 191
Query: 208 EIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL 267
+KN P D + +L+++ +G D G+ +AF F+N SA NA+
Sbjct: 192 NCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDN---GKPKGFAFANFENHESALNAI 248
Query: 268 -SLNGAVM-------NGKPLHVSKVMRKAYLERQEVKR 297
+L+G G+ ++ K RK ER E R
Sbjct: 249 KNLHGTFPFGAGRDGTGEAFYIQKGQRKE--ERAEELR 284
Score = 58.5 bits (140), Expect = 2e-08
Identities = 51/172 (29%), Positives = 80/172 (45%), Gaps = 19/172 (11%)
Query: 114 TIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATN 173
TI+V P S L + S +LS++L A FA+V + E A++A
Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNV--GKVLSVKLIKRA-EPVSSFAFVTFENEEDAERAIR 71
Query: 174 RLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDT 233
E++N ++ ++ +ER T N I VKNLP+D T DL F+ FG+
Sbjct: 72 EYKHYELHNRQI--RVMKKDERPPETGN-------IFVKNLPEDFTGKDLDDAFSMFGEI 122
Query: 234 EKARIVTGDETNPGRHSRYAFITFKNKASA----DNALSLNGAVMNGKPLHV 281
++ T T+ G+ Y F+ FK K +A N SL+G ++ G + V
Sbjct: 123 VSCKVAT---TSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVV 171
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 55.8 bits (133), Expect = 1e-07
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 115 IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNR 174
++V N D +L ++ S + +LS ++ A + + +V S A N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAF--GKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNF 90
Query: 175 LNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTE 234
NG I N + + R + + + + VKNL + T DL ++F EFG+
Sbjct: 91 HNGTLIRNQHI--HVCPFVSRGQWDKSRVFTN--VYVKNLVETATDADLKRLFGEFGEIT 146
Query: 235 KARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMR------- 286
A ++ E G+ R+ F+ F+ +A A+ +NG V++ K LHV + R
Sbjct: 147 SAVVMKDGE---GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTED 203
Query: 287 -KAYLERQEVKRLLASRK 303
KA E +++ R + +RK
Sbjct: 204 LKAKFELEKIIRDMKTRK 221
Score = 55.5 bits (132), Expect = 2e-07
Identities = 70/291 (24%), Positives = 112/291 (38%), Gaps = 57/291 (19%)
Query: 39 VLVKNLPPNYNHHKVRRYFKTCGSILQIDVTDSTDGDSK-LARIEFSSYDQALTAVSRTL 97
V VKNL + ++ ++ F G +L V G SK ++F S TA +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN--- 89
Query: 98 KKIGFHQITV------------------EQLTDSTIWVTNFPPGYDASKLRNLLSQYIDS 139
FH T+ + + ++V N + L+ L ++
Sbjct: 90 ----FHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEF--G 143
Query: 140 PILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTE- 197
I S + RRF +V+ E A A ++NG+ ++ +L V + RTE
Sbjct: 144 EITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTED 203
Query: 198 -----RTDNAISD-----GREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPG 247
+ I D G + VKNL D + L ++F+EFG T N G
Sbjct: 204 LKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFG--------TITSCNKG 255
Query: 248 RHSRYAFITFKNKASADNA-LSLNGAVMNGKPLHVS----KVMRKAYLERQ 293
F+ F A A L +NG ++ KP++VS K K +L+ Q
Sbjct: 256 ----VGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQ 302
>At1g01080 [R] KOG0118 FOG: RRM domain
Length = 293
Score = 53.9 bits (128), Expect = 5e-07
Identities = 46/186 (24%), Positives = 85/186 (44%), Gaps = 16/186 (8%)
Query: 115 IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLP-SLAFNSRRRFAYVDLVSPEVAKKATN 173
++V N P YD ++L ++ + ++S+ + + R YV + S AK A
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPF--GTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 174 RLNGIEINNYKLVAKIS-NVNERTERTDNAISDG----------REIIVKNLPDDITIDD 222
L+G E+ ++ + S ++N T R ++ ++ V NLP D
Sbjct: 168 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 227
Query: 223 LIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNALSLNGAVMNGKPLHVS 282
L F++FG R++ +T GR+ +AF++F + D ALS NG G+ + V
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKT--GRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 285
Query: 283 KVMRKA 288
+ + K+
Sbjct: 286 EGIEKS 291
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 53.1 bits (126), Expect = 8e-07
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 155 RRFAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERTDNAISDGREIIVKN 213
R F +V + S + A+ A + N ++N L V K + R ER + V N
Sbjct: 191 RGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGN 250
Query: 214 LPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNALS-LNGA 272
LP D+ L ++F+E G +AR+V ET GR + F+T + + A+S L+G
Sbjct: 251 LPWDVDNGRLEQLFSEHGKVVEARVVYDRET--GRSRGFGFVTMSDVDELNEAISALDGQ 308
Query: 273 VMNGKPLHVS 282
+ G+ + V+
Sbjct: 309 NLEGRAIRVN 318
>Hs8922073 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily)
Length = 377
Score = 52.4 bits (124), Expect = 1e-06
Identities = 34/118 (28%), Positives = 56/118 (46%), Gaps = 6/118 (5%)
Query: 196 TERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFI 255
+E T+N S + + V N+P DL +MF +FG I+ + + G + F+
Sbjct: 87 SENTENK-SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG----FGFV 141
Query: 256 TFKNKASADNALS-LNGAVMNGKPLHVSKVMRKAYLERQEVKRLLASRKENPKVVGIY 312
TF+N A AD A L+G V+ G+ + V+ + ++ V K NP V +Y
Sbjct: 142 TFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVY 199
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 52.0 bits (123), Expect = 2e-06
Identities = 36/134 (26%), Positives = 64/134 (46%), Gaps = 7/134 (5%)
Query: 157 FAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERTDNAISDGR---EIIVK 212
FA+V+ PE A+ A ++N + + + V + SN+ + D + R I V
Sbjct: 172 FAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVA 231
Query: 213 NLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITF-KNKASADNALSLNG 271
++ D++ DD+ +F FG + + T G+H Y FI + K ++S D S+N
Sbjct: 232 SVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNL 289
Query: 272 AVMNGKPLHVSKVM 285
+ G+ L V K +
Sbjct: 290 FDLGGQYLRVGKAV 303
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 52.0 bits (123), Expect = 2e-06
Identities = 36/134 (26%), Positives = 64/134 (46%), Gaps = 7/134 (5%)
Query: 157 FAYVDLVSPEVAKKATNRLNGIEINNYKL-VAKISNVNERTERTDNAISDGR---EIIVK 212
FA+V+ PE A+ A ++N + + + V + SN+ + D + R I V
Sbjct: 155 FAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVA 214
Query: 213 NLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITF-KNKASADNALSLNG 271
++ D++ DD+ +F FG + + T G+H Y FI + K ++S D S+N
Sbjct: 215 SVHQDLSDDDIKSVFEAFGKIKSCTLARDPTT--GKHKGYGFIEYEKAQSSQDAVSSMNL 272
Query: 272 AVMNGKPLHVSKVM 285
+ G+ L V K +
Sbjct: 273 FDLGGQYLRVGKAV 286
>At3g52660 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 471
Score = 52.0 bits (123), Expect = 2e-06
Identities = 62/276 (22%), Positives = 117/276 (41%), Gaps = 20/276 (7%)
Query: 4 ENNKRRPEDENVSVEEAATLKKVKNLHTHNREYTTVLVKNLPPNYNHHKVRRYFKTCGSI 63
E + E++ V+ EE K+ L + V + +P + ++ + + G +
Sbjct: 59 EVEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEV 118
Query: 64 LQIDVTDSTD-GDSK-LARIEFSSYDQALTAVSRTLKKIGFHQITVEQLTDST---IWVT 118
++ + D GD K A + F S D A A+ TL F ++ T +++
Sbjct: 119 TEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID-TLNNTDFRGKRIKCSTTQAKHRLFLG 177
Query: 119 NFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRR--FAYVDLVSPEVAKKATNRLN 176
N P + S ++ ++ I + + LP N R FA+++ + A+ + +++
Sbjct: 178 NVPRNWMESDIKKAANR-IGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMS 236
Query: 177 GIEINNYKLVAKISNVNERTERT----DNAISDGREIIVKNLPDDITIDDLIKMFNEFGD 232
++KL V+ R+ D++ S + + +KNLP DIT + L +F G
Sbjct: 237 N---PSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGK 293
Query: 233 TEKARIVTGDETNPGRH-SRYAFITFKNKASADNAL 267
K I PG+ SRY F+ + + S AL
Sbjct: 294 ILKVVI---PPAKPGKEDSRYGFVHYAERTSVMRAL 326
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 51.6 bits (122), Expect = 2e-06
Identities = 41/179 (22%), Positives = 80/179 (43%), Gaps = 5/179 (2%)
Query: 112 DSTIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKA 171
++ ++ N P D++ L ++ + + ++ + L + R FA+V + + E
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQDFANPELVEV-LYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 172 TNRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFG 231
+ L+G E L ++ + + ++ V NL +T + L F E G
Sbjct: 143 IDNLDGTEYLGRALKVNFAD-KPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECG 201
Query: 232 DTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVSKVMRKAY 289
D AR+V +T GR Y F+ + +KA + AL SL+G + G+ + V+ K +
Sbjct: 202 DVVGARVVFDGDT--GRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258
>YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 887
Score = 51.2 bits (121), Expect = 3e-06
Identities = 39/146 (26%), Positives = 71/146 (47%), Gaps = 8/146 (5%)
Query: 157 FAYVDLVSPEVAKKATNRLNGIEINNYKLVAKISNVNERTERTDNAISDGR--EIIVKNL 214
F +V+ + E A ++G I+ +K+ K+S+ S+ + +IIVKNL
Sbjct: 711 FGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNL 770
Query: 215 PDDITIDDLIKMFNEFGDTEKARIVTG-DETNPGRHSRYAFITFKNKASADNAL-SLNGA 272
P + T D+ ++FN FG + R+ D++ G +AF+ F A+NA+ L+G
Sbjct: 771 PFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG----FAFVEFLLPKEAENAMDQLHGV 826
Query: 273 VMNGKPLHVSKVMRKAYLERQEVKRL 298
+ G+ L + A +E+ R+
Sbjct: 827 HLLGRRLVMQYAEEDAVDAEEEIARM 852
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 51.2 bits (121), Expect = 3e-06
Identities = 42/177 (23%), Positives = 80/177 (44%), Gaps = 14/177 (7%)
Query: 109 QLTDSTIWVTNFPPGYDASKLRNLLSQY--IDSPILSIRLPSLAFNSRRRFAYVDLVSPE 166
+ +D ++V N D + ++L QY + PI +I++ N +A+V+
Sbjct: 71 ETSDRVLYVGNL----DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSH 126
Query: 167 VAKKATNRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKM 226
A A LNG +I N I +N + ++ D + V +L ++ + L
Sbjct: 127 DANIALQTLNGKQIEN-----NIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNA 181
Query: 227 FNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHVS 282
F +F ++ +T R Y F++F ++ A NA+ S+ G +NG+PL ++
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSR--GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 236
>SPAC343.07 [R] KOG0118 FOG: RRM domain
Length = 609
Score = 50.8 bits (120), Expect = 4e-06
Identities = 35/98 (35%), Positives = 51/98 (51%), Gaps = 9/98 (9%)
Query: 188 KISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVT---GDET 244
K+S N+R+ + I V NLP DL ++F FG+ K +++ T
Sbjct: 6 KLSEKNKRSTKKCEI-----SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKST 60
Query: 245 NPGRHSRYAFITFKNKASADNAL-SLNGAVMNGKPLHV 281
+ + +AFITF+NK SADNA+ SLNG+ G L V
Sbjct: 61 DSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKV 98
>At3g12640 [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 674
Score = 50.4 bits (119), Expect = 5e-06
Identities = 45/133 (33%), Positives = 62/133 (45%), Gaps = 13/133 (9%)
Query: 162 LVSPEVAKK-ATNRLNGIEINNYKLVAKISNVNERTER--------TDNAISDG--REII 210
LVS E + +T ++ G I N + S E T T + D R I
Sbjct: 460 LVSSEATTQLSTQKILGDTIGNGNVKPAASVKEESTTNKSVPGTLSTTRPLEDASSRTIF 519
Query: 211 VKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNALSLN 270
V N+ T D L + FN+FG+ KA IVT T G+ S A+I F K +A+NALSL+
Sbjct: 520 VANVHFGATKDSLSRHFNKFGEVLKAFIVTDPAT--GQPSGSAYIEFTRKEAAENALSLD 577
Query: 271 GAVMNGKPLHVSK 283
G + L + K
Sbjct: 578 GTSFMSRILKIVK 590
>Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 963
Score = 50.1 bits (118), Expect = 7e-06
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 25/201 (12%)
Query: 18 EEAATLKK--VKNLHTHNREYTTVLVKNLPPNYNHH--KVRRYFKTCGSILQIDVTDSTD 73
E+AA+LK+ K LH +++ TV V NLP + K+R F+ CG ++QI S
Sbjct: 683 EKAASLKRDMPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNR 742
Query: 74 GDSK-LARIEFSSYDQALTAVSRTLKKIGFHQITVEQLTDST------------------ 114
GD + +EF AL A+ K + + V D +
Sbjct: 743 GDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHK 802
Query: 115 IWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKATNR 174
++++ P +L + + + +RL + + AYV+ + A +A +
Sbjct: 803 LFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 860
Query: 175 LNGIEINNYKLVAKISNVNER 195
++G+ I + ISN +R
Sbjct: 861 MDGMTIKENIIKVAISNPPQR 881
>7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 673
Score = 50.1 bits (118), Expect = 7e-06
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 96 TLKKIGFHQITVEQLTDSTIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRR 155
T KKIG +T+ + ++V N P D +L S++ I S +
Sbjct: 269 TGKKIG---VTIS-FNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKN 324
Query: 156 R-FAYVDLVSPEVAKKATNRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNL 214
R F +++ S + A A RL I + + + + E + +S + + V+NL
Sbjct: 325 RGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNL 384
Query: 215 PDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASADNAL-SLNGAV 273
D++ D L + F ++G E+ + + YAFI F+++ SA A+ LNG
Sbjct: 385 TQDVSEDKLKEQFEQYGKVERVKKI----------KDYAFIHFEDRDSAVEAMRGLNGKE 434
Query: 274 MNGKPLHVSKV------MRKAYLERQEVKRLLASRKENPKVVG 310
+ + VS +K + R +R++ + P +VG
Sbjct: 435 IGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVG 477
>SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 833
Score = 49.7 bits (117), Expect = 9e-06
Identities = 83/385 (21%), Positives = 153/385 (39%), Gaps = 57/385 (14%)
Query: 63 ILQIDVTDSTDGDSKLARIEFSSYDQALT---AVSRTLKKIGFHQITVEQL-----TDST 114
+ + D+ D T DS + QALT + T H + ++ +D+
Sbjct: 456 VKKTDILDPTSSDSAVK--------QALTETHVIQETKNFFEEHGVDLDAFKNAARSDNV 507
Query: 115 IWVTNFPPGYDASKLRNLLS-------------------QYIDSPILSIRLPSLAFNS-R 154
+ V NFP G A +L +L S +++++P LA+ +
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSKLAYTRIK 567
Query: 155 RRFAYVDLVSPEVAKKATNRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNL 214
Y++ +V + + E+ K+ A + +E+ D D I VKNL
Sbjct: 568 SSILYLEKAPRDVFTTSFKQSGKPELAQ-KVNAVEATTSEKVGTEDIESLDTATIYVKNL 626
Query: 215 PDDITIDDLIKMFNEFGDTEKARI-VTGDETNPGRHSR--YAFITFKNKASADNAL-SLN 270
++ K+F A I D PG++ + F+ FK+KASA A+ ++N
Sbjct: 627 NFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMN 686
Query: 271 GAVMNGKPLHVSKVMRKAYLERQEVKRLLASRKENPKVVGIYPLSDQITPDQILAFITEK 330
G V++G L + K+ + EV++ +S+ + K++ I L + T + + +
Sbjct: 687 GFVLDGHKLEI-KLSHQGVDAAAEVRKQDSSKPKGTKIL-IKNLPFEATKKDVQSLLGAY 744
Query: 331 AQIRPPDITKVLLVSDHEGALIIADKEAITAKVSLAINGYKFKNRILKCVSAHELSLHYP 390
Q+R + K A A E +TA+ + N + + H L H
Sbjct: 745 GQLRSVRVPKKF----DRSARGFAFAEFVTAR--------EAANAMRALKNTHLLGRHLV 792
Query: 391 NEH--KTTLNQPKHAVVKEIKSQQA 413
++ T++ +HA+ K K A
Sbjct: 793 LQYASNATMDDMQHAIEKMAKEANA 817
>ECU02g0250 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 246
Score = 49.7 bits (117), Expect = 9e-06
Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 30/222 (13%)
Query: 113 STIWVTNFPPGYDASKLRNLLSQYIDSPILSIRLPSLAFNSRRRFAYVDLVSPEVAKKAT 172
S ++V+NFP Y + + + + I SI++ R F+ ++ P AK A
Sbjct: 3 SKLFVSNFPESYSEESMSLIFNPF--GEIKSIKI----LREPRLFSIIEFQEPLDAKAAM 56
Query: 173 NRLNGIEINNYKLVAKISNVNERTERTDNAISDGREIIVKNLPDDITIDDLIKMFNEFGD 232
+ L G + + I +R +R + V +P D + ++++K F +G
Sbjct: 57 DSLGGRRVYGHNEPLHIEMAFDRKKR----------VAVSGIPSDSSKEEVLKFFQYYGS 106
Query: 233 TEKARIVTGDETNPGRHSRYAFITFKNKASADNALSLNGAVMNGKPLHVSKVMRKAYLER 292
E I GD+ + FI F ++ A++ L L+ + GK ++ K + +R
Sbjct: 107 VE--NITHGDD------MQTIFIDFSSQQDAESFLELDQKISFGK--EKCRLSIKPFTKR 156
Query: 293 QEVKRLLASRKENPKVVGIYPLSDQITPDQILAFITEKAQIR 334
+ +L+ + V IY LS + T + + +IR
Sbjct: 157 ERKDSVLSPERS----VFIYNLSPRTTRTDLADLFVKFGEIR 194
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 49.7 bits (117), Expect = 9e-06
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 204 SDGREIIVKNLPDDITIDDLIKMFNEFGDTEKARIVTGDETNPGRHSRYAFITFKNKASA 263
S+ + V +L D++ + L F +FG+ +A+++ +T + Y F++F NK +A
Sbjct: 24 SEHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKG--YGFVSFPNKQNA 81
Query: 264 DNALS-LNGAVMNGKPLHVSKVMRKAYLERQE---VKRLLASRKENPKVVGIYPLSDQIT 319
+NA++ +NG + + + + RK E ++ +++ S K + V + +S Q T
Sbjct: 82 ENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTT 141
Query: 320 PDQILAFITEKAQIRPPDITKVLLVSDHEGALIIADKEAITAKVSLAINGYKFKNRILKC 379
+ + DI +V + A + +K+ K + +NG + ++C
Sbjct: 142 DADLRDLFSTYG-----DIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRC 196
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,067,672
Number of Sequences: 60738
Number of extensions: 1020296
Number of successful extensions: 4330
Number of sequences better than 1.0e-05: 43
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 4154
Number of HSP's gapped (non-prelim): 102
length of query: 432
length of database: 30,389,216
effective HSP length: 109
effective length of query: 323
effective length of database: 23,768,774
effective search space: 7677314002
effective search space used: 7677314002
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)