ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV2839    suspect: LH   L     KOG3020  Replication, recombination and repair                          TatD-related DNase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV2839 988325 987354 -324 
         (324 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YMR262w [L] KOG3020 TatD-related DNase                                223   4e-58
SPAC688.13 [L] KOG3020 TatD-related DNase                              86   6e-17

>YMR262w [L] KOG3020 TatD-related DNase
          Length = 313

 Score =  223 bits (567), Expect = 4e-58
 Identities = 133/327 (40%), Positives = 185/327 (55%), Gaps = 25/327 (7%)

Query: 5   LVDAHCHVSTMVDAVGCDKIRSNLDLALAGTASDVQRCVMSTNVYDWXXXXXXXXMKQLD 64
           LVDAHCHV T  D   C            G +    RCVMS+N YDW             
Sbjct: 4   LVDAHCHVITDPDNTFCGD---------DGGSQGTLRCVMSSNPYDWNNLKKLAGRSTSK 54

Query: 65  DEGPGINVSLGVHPWYCHLYQLDRSLSKVGHYRNCLKCKDEVQLMELVEQLPDPVDLSSY 124
           ++   I V  GVHPWY HL+ +     KV HY++ L+ K+E Q   LV+ LP+P+DL  Y
Sbjct: 55  ND---ICVGFGVHPWYSHLFYVGSRRDKVSHYQDVLEYKNEEQFDSLVQVLPEPLDLEEY 111

Query: 125 LSDE-RVSRVGCIGEIGLDKVFRLPQNGFLVSNNGTSLERSSLSNVRVEFAHQIQVFETL 183
           +  E   + V  IGEIGLDK+FRLP NGF + N     E++ L+ V+V+ +HQ  VF   
Sbjct: 112 IKREFNDTLVSVIGEIGLDKLFRLPANGFYMQN-----EKARLTTVKVKLSHQETVFRRF 166

Query: 184 LKVAKGRGLPVSIHSVKCQGTTFDICKRILLD-SEVNICLHSFTGTLDTVR-LWLANFPH 241
            ++A+    P+SIH VKC G   DIC   LL    V ICLHS+TG+ +T+   WL  FP 
Sbjct: 167 WRLARHTSKPISIHDVKCHGKLNDICNEELLTYHSVKICLHSYTGSKETLLGQWLKKFPP 226

Query: 242 ERLFFSVSCWINLKDWDSGAELLKSLPLQCILTETDCSVDSVSSQEQRQMLDSV--LDA- 298
           +R+F S+S WIN KD + G  L++SLP  CILTETD  +D+     Q+ + + +  L+A 
Sbjct: 227 DRIFVSLSKWINFKDPEEGDALVRSLPSTCILTETDYPIDNPDPSYQKALTEQLQYLNAQ 286

Query: 299 ISRA--HGISRTKAMDTVLQNFNRFLR 323
           I+RA    +  ++A   V +NF +F++
Sbjct: 287 IARAWDETLDASQAALRVYENFQKFIK 313


>SPAC688.13 [L] KOG3020 TatD-related DNase
          Length = 335

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 92/336 (27%), Positives = 145/336 (42%), Gaps = 65/336 (19%)

Query: 5   LVDAHCHVSTMVDAVGCDKIRSNLDLALAGTASDVQRCVMSTNVYDWXXXXXXXXMKQLD 64
           ++DAHCH +               +L L    S  +  VM T   D         ++QL 
Sbjct: 4   IIDAHCHPTDAPQ-----------ELHLVANLSVGKLIVMGTRPTD------QKYVEQLA 46

Query: 65  DEGPG-INVSLGVHPWYCH-LYQ-LDRSLS-----KVGHYRNCLK-CKDEVQLMELVEQL 115
            E PG +  S G+HPW+ + LY  LD+ L      K  HY   L    DE    + +  L
Sbjct: 47  KEYPGKVIPSFGIHPWFSYYLYDDLDKDLQSSETRKKKHYEKILTPIPDE----DFINAL 102

Query: 116 PDPVDLSSYLSDERVSRV----GCIGEIGLDKVFRLPQNGFLVSNNGTSLERSSLSNVRV 171
           P+PV +S +L D R          IGEIGLDK FRLP   +   +  +SL +  LS   V
Sbjct: 103 PNPVPISEFLEDARRHLKQYPNALIGEIGLDKPFRLPVGPY---DARSSLPQGPLSPFYV 159

Query: 172 EFAHQIQVFETLLKVAKGRGLPVSIHSVKCQGTTFDICKRI----LLDSEV--------- 218
           +  HQ +VFE  +++A      VS+H V+     +    +      + S+          
Sbjct: 160 KMEHQCKVFEAQVRLAAEFQRAVSVHCVQTYALLYSSLAKFWDGRWIPSKTKIRKMKKEE 219

Query: 219 --------------NICLHSFTGTLDTVRLWLANFPHERLFFSVSCWINLKDWDSGAELL 264
                          ICLHS++G+++ +  + A+      ++S S  IN + + +  + L
Sbjct: 220 YENSLAEERKHYPPKICLHSYSGSIEQISQFSAHKVPTEFYYSFSIGINSR-YKNFIQTL 278

Query: 265 KSLPLQCILTETDCSVDSVSSQEQRQMLDSVLDAIS 300
           K +P   +L E+D    S   +  RQ L+ + +A S
Sbjct: 279 KGVPDDKLLAESDHHSASQIDELVRQSLNVMSEAKS 314


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,452,822
Number of Sequences: 60738
Number of extensions: 744397
Number of successful extensions: 1712
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1702
Number of HSP's gapped (non-prelim): 3
length of query: 324
length of database: 30,389,216
effective HSP length: 106
effective length of query: 218
effective length of database: 23,950,988
effective search space: 5221315384
effective search space used: 5221315384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)