ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV2855 good J KOG3403 Translation, ribosomal structure and biogenesis Translation initiation factor 1A (eIF-1A)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV2855 992638 993102 155
(155 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR260c [J] KOG3403 Translation initiation factor 1A (eIF-1A) 232 2e-61
SPBC25H2.07 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 177 7e-45
Hs4503499 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 168 3e-42
Hs4758254 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 165 3e-41
7300367 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 153 8e-38
At2g04520 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 146 9e-36
At5g35680 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 145 3e-35
CE17962 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 142 1e-34
ECU04g1170 [J] KOG3403 Translation initiation factor 1A (eIF-1A) 69 3e-12
>YMR260c [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 153
Score = 232 bits (591), Expect = 2e-61
Identities = 111/119 (93%), Positives = 115/119 (96%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFD KRMAHIRGKLRK+VWM QGDII
Sbjct: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDII 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEVNFEFGNA 136
LVSLRDFQDDQCDVVHKYN DEARTLK+QGELPENAKINETDNFGFESD++VNFEFGNA
Sbjct: 78 LVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDEDVNFEFGNA 136
>SPBC25H2.07 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 138
Score = 177 bits (448), Expect = 7e-45
Identities = 81/116 (69%), Positives = 101/116 (86%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
+++ KREL Y EEGQ YAQ+TKMLGNGR+EA+CFD VKR+ HIRGKLRK+VW++QGDII
Sbjct: 18 ENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDII 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEVNFEF 133
L+SLR+FQD++ DV+ KY DEARTLK+QGELPE AKINETD FG E +D+++FEF
Sbjct: 78 LLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133
>Hs4503499 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 144
Score = 168 bits (425), Expect = 3e-42
Identities = 76/115 (66%), Positives = 97/115 (84%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
+++ KREL++KE+GQEYAQ+ KMLGNGR+EA CFD VKR+ HIRGKLRK+VW++ DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEVNFE 132
LV LRD+QD++ DV+ KYN DEAR+LK+ GELPE+AKINETD FG DDE+ F+
Sbjct: 78 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>Hs4758254 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 144
Score = 165 bits (417), Expect = 3e-41
Identities = 75/115 (65%), Positives = 96/115 (83%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
+++ KREL++KE+GQEYAQ+ KMLGNGR+EA CFD VKR+ HIRGKLRK+VW++ DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDII 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEVNFE 132
LV LRD+QD++ DV+ KYN DEAR+LK+ G LPE+AKINETD FG DDE+ F+
Sbjct: 78 LVGLRDYQDNKADVILKYNADEARSLKAYGGLPEHAKINETDTFGPGDDDEIQFD 132
>7300367 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 148
Score = 153 bits (387), Expect = 8e-38
Identities = 74/118 (62%), Positives = 94/118 (78%), Gaps = 1/118 (0%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
+++ KRELI+KE+ QEYAQ+TKMLGNGR+EA CFD VKR+ HIRGKLRK+VW++QGDII
Sbjct: 18 ENEFEKRELIFKEDQQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDII 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEVNFEFGN 135
LV LRD+QD + DV+ KY DEAR LK+ GE PE+ +INET F + DE + EFG+
Sbjct: 78 LVGLRDYQDSKADVILKYTPDEARNLKTYGEFPESVRINETVTFVEDGFDE-DIEFGD 134
>At2g04520 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 145
Score = 146 bits (369), Expect = 9e-36
Identities = 67/113 (59%), Positives = 87/113 (76%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
++D KRELI+KE+GQEYAQ+ +MLGNGR EA C D KR+ HIRGK+ K+VW++ GDI+
Sbjct: 18 EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIV 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEVN 130
LV LRD+QDD+ DV+ KY +DEAR LK+ GELPEN ++NE E DD+ N
Sbjct: 78 LVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDNN 130
>At5g35680 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 145
Score = 145 bits (365), Expect = 3e-35
Identities = 66/112 (58%), Positives = 87/112 (76%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
++D KRELI+KE+GQEYAQ+ +MLGNGR + C D VKR+ HIRGK+ K+VW++ GDII
Sbjct: 18 EADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDII 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEV 129
LV LRD+QDD+ DV+ KY +DEAR LK+ GELPEN ++NE + DD+V
Sbjct: 78 LVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDDDDDV 129
>CE17962 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 216
Score = 142 bits (359), Expect = 1e-34
Identities = 69/114 (60%), Positives = 88/114 (76%), Gaps = 3/114 (2%)
Query: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDII 77
++D KREL KEEGQEY Q++KMLGNGRV+ CFD +R+ HIRGKLRK+VW++ GDII
Sbjct: 18 ENDFMKRELDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDII 77
Query: 78 LVSLRDFQDDQCDVVHKYNTDEARTLKSQGELPENAKINETDNFGFESDDEVNF 131
LV LRD+QDD+ DV+ KY DEAR LK++G +PENAK+NE D + + EV F
Sbjct: 78 LVGLRDYQDDKGDVILKYTPDEARRLKNEGLIPENAKLNENDE---QDEGEVEF 128
>ECU04g1170 [J] KOG3403 Translation initiation factor 1A (eIF-1A)
Length = 119
Score = 68.6 bits (166), Expect = 3e-12
Identities = 36/91 (39%), Positives = 55/91 (59%), Gaps = 1/91 (1%)
Query: 24 RELIY-KEEGQEYAQITKMLGNGRVEASCFDDVKRMAHIRGKLRKRVWMSQGDIILVSLR 82
R L++ +EEG Y QI LG G+ + SC D V R A +RG+ +RV M GDI+L+ +R
Sbjct: 12 RALVFAEEEGTVYGQIICPLGQGQFKVSCSDGVYRTAKVRGRDYRRVRMVPGDIVLLRVR 71
Query: 83 DFQDDQCDVVHKYNTDEARTLKSQGELPENA 113
D + + D+ KY E + LK GE+ +++
Sbjct: 72 DGDEKRADIDRKYMPKEVKILKEDGEINDDS 102
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,809,383
Number of Sequences: 60738
Number of extensions: 304256
Number of successful extensions: 659
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 9
length of query: 155
length of database: 30,389,216
effective HSP length: 97
effective length of query: 58
effective length of database: 24,497,630
effective search space: 1420862540
effective search space used: 1420862540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)